Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.3e-301 1038.1 519 100.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.0e-293 1011.1 533 95.9
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.6e-222 776.2 496 78.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.5e-215 752.3 554 72.4
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.2e-214 750.0 563 71.0
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.4e-213 746.5 550 70.5
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 1.9e-210 736.1 584 66.1
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.7e-208 729.6 555 70.5
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.9e-208 728.4 561 66.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.6e-208 727.2 528 70.1
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 9.5e-207 723.8 565 65.1
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 3.6e-206 721.8 565 65.3
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 8.1e-206 720.7 503 71.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 3.1e-205 718.8 546 68.5
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 6.8e-205 717.6 521 69.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.5e-204 716.5 503 71.4
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 1.5e-204 716.5 558 66.8
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.9e-203 711.4 489 73.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 6.4e-203 711.1 553 67.1
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.4e-202 709.1 553 67.5
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 4.1e-202 708.4 555 66.1
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.2e-201 706.8 490 72.0
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 3.5e-201 705.3 497 72.0
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 4.6e-201 704.9 557 66.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.3e-200 702.6 559 66.7
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.0e-200 702.2 477 73.0
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.9e-199 699.5 472 73.3
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 7.3e-199 697.6 555 65.6
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 6.2e-198 694.5 557 64.1
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 1.1e-197 693.7 540 66.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.1e-197 693.7 558 65.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 2.3e-197 692.6 471 73.5
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 6.8e-197 691.0 556 66.2
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.7e-195 685.3 513 68.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.2e-194 682.2 520 68.5
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 5.4e-194 681.4 549 65.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.7e-192 676.4 548 65.1
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.0e-192 675.6 554 64.3
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 3.0e-192 675.6 538 65.6
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 5.1e-192 674.9 535 66.2
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.5e-191 673.3 556 65.1
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.3e-191 671.8 552 64.5
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.3e-191 671.8 528 65.7
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 4.3e-191 671.8 554 63.4
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 7.3e-191 671.0 556 65.3
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.6e-190 668.7 477 70.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 4.7e-190 668.3 510 67.3
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 1.4e-189 666.8 530 64.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-189 666.8 495 68.5
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.4e-189 666.0 563 62.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.4e-188 662.1 459 72.8
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.4e-188 661.8 455 73.2
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.9e-187 659.1 549 62.8
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.8e-187 658.7 511 66.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 4.9e-187 658.3 548 63.1
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.4e-186 656.0 533 65.3
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.4e-186 656.0 551 62.3
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.6e-185 653.3 533 63.4
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.5e-185 652.1 516 64.1
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 3.9e-184 648.7 520 64.4
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.9e-184 648.7 483 67.9
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 6.6e-184 647.9 430 74.4
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.7e-184 647.5 522 64.6
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-183 647.1 582 59.3
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.9e-183 646.4 467 68.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.9e-183 646.4 562 62.1
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.3e-183 645.6 469 67.8
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.3e-183 645.6 469 67.8
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 5.6e-183 644.8 468 67.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 5.6e-183 644.8 468 67.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 9.6e-183 644.0 474 67.1
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.3e-182 643.7 510 65.9
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-182 643.7 513 64.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.3e-182 643.7 486 66.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.3e-182 643.7 567 61.7
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-182 643.3 468 67.9
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.1e-182 642.9 542 61.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.1e-182 642.9 473 67.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.8e-182 642.5 573 60.4
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 4.8e-182 641.7 452 69.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 4.8e-182 641.7 450 69.8
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 6.2e-182 641.3 470 67.4
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 8.1e-182 641.0 450 69.8
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 8.1e-182 641.0 540 60.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.4e-181 640.2 474 67.3
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.4e-181 640.2 492 65.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.0e-180 636.3 547 61.2
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 3.4e-180 635.6 548 60.4
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.9e-179 632.5 462 68.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 4.9e-179 631.7 459 68.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 6.4e-179 631.3 467 67.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.4e-178 630.2 615 56.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.1e-177 626.3 467 66.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 3.5e-177 625.5 512 62.3
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 7.9e-177 624.4 455 67.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.0e-176 624.0 538 60.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.3e-176 623.6 498 64.3
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 3.9e-176 622.1 445 69.7
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 1.1e-175 620.5 471 63.3
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 1.9e-175 619.8 499 62.7
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 8.1e-174 614.4 684 51.3
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.4e-173 613.6 476 66.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.5e-172 610.1 513 60.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.5e-172 608.6 523 58.7
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 9.9e-172 607.4 543 61.5
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.7e-171 606.7 546 58.4
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.2e-171 606.3 448 67.9
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.9e-171 605.1 561 56.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.9e-170 603.2 598 55.5
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 2.4e-170 602.8 517 60.7
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.1e-170 601.3 459 63.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.8e-168 596.7 456 64.5
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.8e-166 588.6 452 64.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.5e-162 576.2 471 66.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.6e-161 572.0 535 60.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.1e-158 563.1 359 79.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.6e-156 556.2 451 60.1
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 9.7e-151 537.7 530 54.5
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 3.8e-147 525.8 356 74.2
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-144 517.3 513 54.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.2e-138 495.7 339 72.9
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 4.7e-137 492.3 385 63.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.9e-130 470.3 336 71.4
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 3.2e-130 469.5 477 51.8
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 4.0e-128 462.6 456 51.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.3e-125 452.2 356 64.6
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.5e-122 444.1 478 49.6
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 5.5e-122 442.2 409 58.7
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 7.0e-117 425.2 319 67.1
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.5e-116 422.5 355 65.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.7e-110 402.9 289 69.2
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 6.2e-97 359.0 208 80.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.5e-95 354.4 232 76.3
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.2e-94 350.5 306 63.1
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.9e-94 350.1 208 78.4
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-91 340.5 285 65.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.3e-91 340.5 473 42.1
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-90 338.2 279 62.4
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.5e-90 337.0 477 40.9
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 4.0e-88 329.7 208 75.5
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.2e-88 329.3 308 57.5
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 4.1e-85 319.7 259 61.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-83 315.1 209 71.3
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.6e-81 307.8 210 69.5
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 8.9e-80 302.0 209 74.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.3e-78 298.1 451 38.4
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.5e-74 284.6 273 59.0
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.9e-69 267.7 431 36.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.4e-69 266.2 241 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 1.5e-63 248.1 274 47.8
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.4e-62 242.7 184 70.1
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 6.2e-57 226.1 497 32.4
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.9e-54 216.5 174 60.3
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.2e-47 195.3 129 74.4
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-47 195.3 277 42.6
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.9e-43 180.3 100 82.0
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.8e-40 171.4 113 65.5
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.0e-39 167.9 121 62.0
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 6.3e-33 146.4 292 36.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-32 145.6 153 52.3
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.1e-32 145.6 88 78.4
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 9.1e-32 142.5 287 36.2
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 3.8e-30 137.1 96 64.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.9e-29 134.8 76 82.9
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.2e-29 133.7 125 52.0
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 9.4e-29 132.5 81 70.4
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.6e-28 130.6 64 98.4
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 4.6e-28 130.2 170 47.1
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.0e-26 124.8 102 64.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.6e-23 114.4 64 82.8
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.7e-23 112.8 70 72.9
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 2.2e-22 111.3 62 83.9
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 6.1e-20 103.2 80 63.8
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.8e-19 101.7 90 60.0
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 6.7e-19 99.8 94 54.3
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 8.8e-19 99.4 62 69.4
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 4.4e-18 97.1 55 80.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-17 95.1 74 56.8
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.1e-12 78.2 51 62.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 2.0e-10 71.6 48 70.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 2.6e-10 71.2 42 78.6
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.8e-09 67.8 113 40.7
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 8.2e-09 66.2 61 57.4
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.6e-07 62.0 154 33.8
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.8e-06 57.4 191 26.7


User provided reference genes

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