Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 0.0e+00 1281.5 656 100.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 5.8e-302 1040.4 658 81.0
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.8e-286 987.3 650 76.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.1e-280 968.8 659 76.0
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.2e-275 953.0 657 74.0
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.3e-274 948.7 658 74.9
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.2e-268 927.2 659 73.3
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 3.6e-267 924.9 659 73.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 5.1e-258 894.4 658 69.0
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 6.7e-258 894.0 652 69.0
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.0e-257 892.5 652 68.9
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 7.4e-257 890.6 656 69.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 7.4e-257 890.6 657 68.8
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 9.7e-257 890.2 652 68.9
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 2.8e-256 888.6 656 67.8
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 4.8e-256 887.9 657 67.7
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.1e-255 886.7 652 68.6
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 5.3e-255 884.4 658 68.1
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.5e-254 882.9 658 68.4
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 3.8e-253 878.2 653 69.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.4e-252 876.3 652 68.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.0e-250 870.2 646 68.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 8.8e-250 867.1 650 67.5
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 5.7e-249 864.4 647 68.6
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 3.7e-248 861.7 647 68.2
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.4e-247 859.8 647 68.3
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.1e-247 858.2 656 67.2
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 5.3e-247 857.8 649 67.2
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.0e-246 855.9 661 66.6
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.5e-246 855.1 648 68.2
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.5e-246 854.7 626 68.7
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 5.9e-246 854.4 651 67.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 7.7e-246 854.0 681 65.6
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.5e-245 850.9 657 67.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.5e-244 849.7 649 65.8
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 1.9e-244 849.4 658 66.9
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.2e-244 848.6 653 65.8
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.2e-244 848.6 653 66.2
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.2e-243 846.7 660 66.5
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 2.1e-243 845.9 657 66.1
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 8.0e-243 844.0 657 65.6
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.0e-243 844.0 653 66.0
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 8.0e-243 844.0 656 66.3
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.3e-242 842.4 657 64.8
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 5.2e-242 841.3 653 66.2
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.5e-241 839.7 657 65.6
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 2.0e-241 839.3 646 63.9
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 4.4e-241 838.2 654 65.3
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.8e-240 835.5 660 66.4
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 3.7e-240 835.1 653 66.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.4e-239 832.4 649 65.3
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.6e-238 829.7 652 66.4
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.0e-238 829.3 653 64.8
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.0e-238 829.3 649 64.1
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.7e-238 828.9 660 65.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.7e-238 828.9 653 64.9
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.5e-238 828.2 658 65.3
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 5.9e-238 827.8 667 65.1
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.8e-237 825.1 653 64.2
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 3.2e-236 822.0 656 65.5
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 4.7e-235 818.1 653 65.1
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.0e-234 815.1 652 65.3
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 6.8e-234 814.3 661 64.6
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.2e-233 813.5 657 67.3
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.4e-231 805.8 656 63.7
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 3.5e-230 802.0 651 64.2
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.0e-229 800.4 651 64.1
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 2.9e-229 798.9 657 63.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 5.0e-229 798.1 658 63.1
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 4.0e-226 788.5 653 66.5
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 8.9e-226 787.3 652 62.1
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 4.4e-225 785.0 649 62.1
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 5.7e-225 784.6 648 61.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 9.8e-225 783.9 650 61.5
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.3e-224 783.5 653 62.2
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.7e-224 783.1 662 62.2
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.0e-221 773.9 646 60.4
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 5.6e-220 768.1 648 61.0
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 9.5e-220 767.3 648 60.5
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 3.6e-219 765.4 648 60.8
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 8.0e-219 764.2 649 60.4
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 8.0e-219 764.2 649 61.2
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-216 756.9 651 59.6
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.3e-216 756.9 651 59.6
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 3.5e-214 748.8 646 57.7
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.0e-213 747.3 491 76.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.8e-211 739.2 658 58.5
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.7e-211 738.4 657 58.0
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.3e-210 736.1 652 58.7
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.7e-208 729.9 647 57.8
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.0e-205 720.7 652 58.4
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 3.9e-205 718.8 647 57.3
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 9.5e-204 714.1 663 57.8
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 5.8e-201 704.9 509 71.9
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 2.7e-198 696.0 686 53.8
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 2.6e-193 679.5 647 56.6
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.2e-190 670.6 649 54.9
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 2.3e-181 639.8 658 51.7
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 4.3e-180 635.6 658 52.4
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 5.3e-146 522.3 519 53.2
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.2e-144 516.9 356 73.0
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.6e-142 510.8 424 62.5
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 7.0e-138 495.4 625 46.2
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.9e-135 487.3 361 67.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 2.5e-135 486.9 495 51.3
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 1.3e-123 448.0 657 38.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.4e-109 401.4 646 36.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 2.3e-101 374.0 650 35.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-93 348.6 506 40.5
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.9e-91 340.5 363 48.5
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.6e-89 333.2 280 58.6
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.1e-85 322.0 272 58.8
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 9.6e-79 298.9 756 29.9
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.4e-76 290.4 270 57.8
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.4e-69 268.5 347 43.2
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 4.6e-65 253.4 701 28.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 6.2e-62 243.0 264 49.6
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-55 221.9 225 56.4
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 8.5e-35 152.9 127 63.8
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 3.9e-32 144.1 80 78.8
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.5e-31 142.1 237 35.0
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.1e-23 115.9 217 35.0
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.7e-22 112.1 103 53.4
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.8e-22 110.5 101 48.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 8.2e-22 109.8 208 31.7
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.1e-21 107.5 108 51.9
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.9e-20 103.6 77 62.3
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.0e-19 102.8 237 32.1
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.9e-18 98.6 86 47.7
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.5e-18 98.2 65 78.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 4.2e-18 97.4 65 73.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.8e-16 92.0 112 44.6
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.5e-15 89.0 95 49.5
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 5.3e-13 80.5 97 49.5
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 5.5e-10 70.5 76 50.0
Dinv21729 Davidia involucrata HOM05D005402 ORTHO05D007036 6.8e-08 63.5 100 48.0
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 3.7e-06 57.8 41 78.0


User provided reference genes

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