Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005618 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 6.5e-63 243.8 117 100.0
CSS0046983 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 1.6e-29 132.9 65 95.4
CSS0048442 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 2.1e-29 132.5 65 95.4
CSS0001204 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 1.4e-28 129.8 126 57.1
CSS0021224 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 4.9e-26 121.3 61 93.4
Gohir.D01G150200 Gossypium hirsutum HOM05D001366 ORTHO05D003220 4.0e-20 101.7 68 69.1
Gorai.002G186200 Gossypium raimondii HOM05D001366 ORTHO05D003220 4.0e-20 101.7 68 69.1
Gohir.A01G159950 Gossypium hirsutum HOM05D001366 ORTHO05D003220 8.9e-20 100.5 68 69.1
Hma1.2p1_0344F.1_g131080 Hydrangea macrophylla HOM05D001366 ORTHO05D016428 1.2e-19 100.1 65 70.8
Dinv15253 Davidia involucrata HOM05D001366 ORTHO05D003220 1.5e-19 99.8 61 77.0
Rhsim12G0042000 Rhododendron simsii HOM05D001366 ORTHO05D003220 1.5e-19 99.8 61 78.7
Hma1.2p1_0223F.1_g094185 Hydrangea macrophylla HOM05D001366 ORTHO05D003220 2.0e-19 99.4 61 75.4
Haze_12225 Corylus avellana HOM05D001366 ORTHO05D003220 2.6e-19 99.0 61 75.4
QL03p058693 Quercus lobata HOM05D001366 ORTHO05D003220 2.6e-19 99.0 61 75.4
Thecc.02G256300 Theobroma cacao HOM05D001366 ORTHO05D003220 2.6e-19 99.0 68 69.1
vmacro01143 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 2.6e-19 99.0 61 77.0
Cfa009191 Carpinus fangiana HOM05D001366 ORTHO05D003220 3.4e-19 98.6 61 73.8
Sabra10G0023900 Salix brachista HOM05D001366 ORTHO05D003220 3.4e-19 98.6 61 73.8
Dinv24813 Davidia involucrata HOM05D001366 ORTHO05D003220 5.8e-19 97.8 61 73.8
Rhsim12G0113000 Rhododendron simsii HOM05D001366 ORTHO05D003220 7.5e-19 97.4 61 77.0
Gohir.A12G144400 Gossypium hirsutum HOM05D001366 ORTHO05D003220 9.8e-19 97.1 68 67.6
TWI75G1447 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 9.8e-19 97.1 61 73.8
Peaxi162Scf00515g00133 Petunia axillaris HOM05D001366 ORTHO05D003220 1.3e-18 96.7 61 75.4
SalBow2G1604 Salvia bowleyana HOM05D001366 ORTHO05D003220 1.3e-18 96.7 61 72.1
Potri.008G188150 Populus trichocarpa HOM05D001366 ORTHO05D003220 1.7e-18 96.3 61 72.1
Duzib268G0758 Durio zibethinus HOM05D001366 ORTHO05D003220 2.2e-18 95.9 68 66.2
MBI16_g14597_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 2.2e-18 95.9 61 72.1
Actinidia15071 Actinidia chinensis HOM05D001366 ORTHO05D003220 2.9e-18 95.5 61 73.8
Actinidia37409 Actinidia chinensis HOM05D001366 ORTHO05D016428 2.9e-18 95.5 61 73.8
CiPaw.05G184800 Carya illinoinensis HOM05D001366 ORTHO05D003220 2.9e-18 95.5 61 73.8
COL.COLO4_24234 Corchorus olitorius HOM05D001366 ORTHO05D003220 2.9e-18 95.5 68 64.7
Nn4g22680 Nelumbo nucifera HOM05D001366 ORTHO05D003220 2.9e-18 95.5 68 66.2
TWI18G0188 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 2.9e-18 95.5 61 73.8
Gohir.D12G149000 Gossypium hirsutum HOM05D001366 ORTHO05D003220 3.7e-18 95.1 68 66.2
Gorai.008G160400 Gossypium raimondii HOM05D001366 ORTHO05D003220 3.7e-18 95.1 68 66.2
Potri.010G044100 Populus trichocarpa HOM05D001366 ORTHO05D003220 6.4e-18 94.4 61 68.9
GSVIVG01013806001 Vitis vinifera HOM05D001366 ORTHO05D003220 6.4e-18 94.4 61 72.1
Cpa.g.sc69.90 Carica papaya HOM05D001366 ORTHO05D003220 1.1e-17 93.6 61 72.1
DCAR_031129 Daucus carota HOM05D001366 ORTHO05D003220 1.1e-17 93.6 61 70.5
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 1.1e-17 93.6 68 66.2
HanXRQChr12g0371851 Helianthus annuus HOM05D001366 ORTHO05D003220 1.4e-17 93.2 61 75.4
Atru.chr11.2087 Acer truncatum HOM05D001366 ORTHO05D003220 1.9e-17 92.8 61 75.4
MSTRG.577 Avicennia marina HOM05D001366 ORTHO05D003220 2.4e-17 92.4 61 67.2
RcHm_v2.0_Chr4g0433251 Rosa chinensis HOM05D001366 ORTHO05D003220 2.4e-17 92.4 61 70.5
PGSC0003DMG400007677 Solanum tuberosum HOM05D001366 ORTHO05D003220 2.4e-17 92.4 61 73.8
DCAR_007067 Daucus carota HOM05D001366 ORTHO05D003220 3.2e-17 92.0 61 70.5
Prupe.1G248900 Prunus persica HOM05D001366 ORTHO05D003220 3.2e-17 92.0 61 72.1
Solyc05g005020.4 Solanum lycopersicum HOM05D001366 ORTHO05D003220 4.1e-17 91.7 61 73.8
Sopen05g001030 Solanum pennellii HOM05D001366 ORTHO05D003220 4.1e-17 91.7 61 73.8
FvH4_4g25800 Fragaria vesca HOM05D001366 ORTHO05D003220 5.4e-17 91.3 61 68.9
FAN07G2766 Fragaria x ananassa HOM05D001366 ORTHO05D003220 5.4e-17 91.3 61 68.9
FAN12G2701 Fragaria x ananassa HOM05D001366 ORTHO05D003220 5.4e-17 91.3 61 68.9
FAN12G3618 Fragaria x ananassa HOM05D001366 ORTHO05D003220 5.4e-17 91.3 61 68.9
PGR119G2090 Punica granatum HOM05D001366 ORTHO05D003220 5.4e-17 91.3 67 70.1
Sabra08G0142500 Salix brachista HOM05D001366 ORTHO05D003220 5.4e-17 91.3 61 68.9
CAN.G447.9 Capsicum annuum HOM05D001366 ORTHO05D003220 7.0e-17 90.9 61 73.8
TAR622G0036 Trochodendron aralioides HOM05D001366 ORTHO05D003220 7.0e-17 90.9 62 71.0
Migut.L01476 Erythranthe guttata HOM05D001366 ORTHO05D003220 9.2e-17 90.5 61 70.5
THA.LOC104823655 Tarenaya hassleriana HOM05D001366 ORTHO05D003220 9.2e-17 90.5 61 72.1
Cc11_g15490 Coffea canephora HOM05D001366 ORTHO05D003220 1.6e-16 89.7 61 68.9
PSO832G0819 Papaver somniferum HOM05D001366 ORTHO05D003220 1.6e-16 89.7 61 67.2
BcaC07g38588 Brassica carinata HOM05D001366 ORTHO05D003220 2.1e-16 89.4 61 68.9
C08p13950 Brassica napus HOM05D001366 ORTHO05D003220 2.1e-16 89.4 61 68.9
BolC8t49029H Brassica oleracea HOM05D001366 ORTHO05D003220 2.1e-16 89.4 61 68.9
AUR62005429 Chenopodium quinoa HOM05D001366 ORTHO05D003220 2.1e-16 89.4 61 68.9
MD16G1097800 Malus domestica HOM05D001366 ORTHO05D003220 2.1e-16 89.4 61 67.2
vmacro16213 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 2.1e-16 89.4 67 68.7
BraA08t35295Z Brassica rapa HOM05D001366 ORTHO05D003220 2.7e-16 89.0 61 68.9
CANSAT01G0055 Cannabis sativa HOM05D001366 ORTHO05D003220 2.7e-16 89.0 61 63.9
Aa31LG1G4070 Aethionema arabicum HOM05D001366 ORTHO05D003220 4.6e-16 88.2 61 68.9
FAN22G0388 Fragaria x ananassa HOM05D001366 ORTHO05D003220 4.6e-16 88.2 61 65.6
Manes.13G026800 Manihot esculenta HOM05D001366 ORTHO05D003220 4.6e-16 88.2 61 68.9
PSO063G5092 Papaver somniferum HOM05D001366 ORTHO05D003220 4.6e-16 88.2 61 65.6
AL1G21690 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 6.0e-16 87.8 61 68.9
AUR62014090 Chenopodium quinoa HOM05D001366 ORTHO05D003220 6.0e-16 87.8 61 67.2
Lsat_1_v5_gn_8_153980 Lactuca sativa HOM05D001366 ORTHO05D003220 6.0e-16 87.8 61 67.2
BcaC07g38627 Brassica carinata HOM05D001366 ORTHO05D003220 7.8e-16 87.4 61 67.2
A08p33790 Brassica napus HOM05D001366 ORTHO05D003220 7.8e-16 87.4 61 67.2
Lj6C809G13 Lonicera japonica HOM05D001366 ORTHO05D003220 7.8e-16 87.4 63 66.7
Ciclev10030499m.g Citrus clementina HOM05D001366 ORTHO05D003220 1.0e-15 87.0 61 68.9
MD13G1096800 Malus domestica HOM05D001366 ORTHO05D003220 1.0e-15 87.0 61 67.2
MSTRG.7915 Avicennia marina HOM05D001366 ORTHO05D003220 1.3e-15 86.7 62 64.5
Glyma.08G283700 Glycine max HOM05D001366 ORTHO05D003220 1.3e-15 86.7 68 61.8
EL10Ac6g13726 Beta vulgaris HOM05D001366 ORTHO05D003220 3.0e-15 85.5 61 67.2
Thhalv10006565m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 3.0e-15 85.5 61 67.2
AT1G10760 Arabidopsis thaliana HOM05D001366 ORTHO05D003220 3.9e-15 85.1 61 67.2
BcaB08g37373 Brassica carinata HOM05D001366 ORTHO05D003220 3.9e-15 85.1 61 67.2
C08p48530 Brassica napus HOM05D001366 ORTHO05D003220 3.9e-15 85.1 61 67.2
A09p64660 Brassica napus HOM05D001366 ORTHO05D003220 5.1e-15 84.7 61 67.2
BolC8t52392H Brassica oleracea HOM05D001366 ORTHO05D003220 5.1e-15 84.7 61 67.2
Glyma.18G142500 Glycine max HOM05D001366 ORTHO05D003220 5.1e-15 84.7 68 60.3
Sp1g09460 Schrenkiella parvula HOM05D001366 ORTHO05D003220 5.1e-15 84.7 61 65.6
Phvul.003G062900 Phaseolus vulgaris HOM05D001366 ORTHO05D003220 6.6e-15 84.3 61 65.6
TAR374G1700 Trochodendron aralioides HOM05D001366 ORTHO05D003220 6.6e-15 84.3 62 66.1
Aqoxy3G02840 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 8.6e-15 84.0 68 63.2
Carub.0001s1031 Capsella rubella HOM05D001366 ORTHO05D003220 8.6e-15 84.0 61 65.6
Medtr8g069760 Medicago truncatula HOM05D001366 ORTHO05D003220 8.6e-15 84.0 61 65.6
BraA09t41826Z Brassica rapa HOM05D001366 ORTHO05D003220 1.1e-14 83.6 61 65.6
Psat4g114240 Pisum sativum HOM05D001366 ORTHO05D003220 1.1e-14 83.6 61 67.2
TPR.G23137 Trifolium pratense HOM05D001366 ORTHO05D003220 1.1e-14 83.6 61 63.9
CARHR010980 Cardamine hirsuta HOM05D001366 ORTHO05D003220 1.5e-14 83.2 61 67.2
CDE04G3560 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 1.5e-14 83.2 68 60.3
Eucgr.H02531 Eucalyptus grandis HOM05D001366 ORTHO05D003220 1.5e-14 83.2 64 65.6
Ah.02g130140 Amaranthus hybridus HOM05D001366 ORTHO05D003220 3.3e-14 82.0 61 65.6
arahy.Tifrunner.gnm1.ann1.52KDTF Arachis hypogaea HOM05D001366 ORTHO05D003220 3.3e-14 82.0 68 60.3
arahy.Tifrunner.gnm1.ann1.N2L19B Arachis hypogaea HOM05D001366 ORTHO05D003220 3.3e-14 82.0 68 60.3
Hund06013 Selenicereus undatus HOM05D001366 ORTHO05D003220 3.3e-14 82.0 62 62.9
ATR1152G017 Amborella trichopoda HOM05D001366 ORTHO05D003220 4.3e-14 81.6 68 54.4
Ca_22500_v3 Cicer arietinum L. HOM05D001366 ORTHO05D003220 4.3e-14 81.6 61 62.3
ClCG05G025580 Citrullus lanatus HOM05D001366 ORTHO05D003220 4.3e-14 81.6 61 63.9
ECA233G2601 Erigeron canadensis HOM05D001366 ORTHO05D003220 4.3e-14 81.6 61 65.6
unitig_26.g10358 Utricularia gibba HOM05D001366 ORTHO05D003220 5.6e-14 81.3 62 62.9
Lj4g0012667 Lotus japonicus HOM05D001366 ORTHO05D003220 7.3e-14 80.9 59 67.8
Ah.03g133220 Amaranthus hybridus HOM05D001366 ORTHO05D003220 2.8e-13 79.0 61 63.9
CDE06G0295 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 2.8e-13 79.0 66 60.6
Lsat_1_v5_gn_4_4920 Lactuca sativa HOM05D001366 ORTHO05D003220 4.7e-13 78.2 61 65.6
Sc04g0009380 Simmondsia chinensis HOM05D001366 ORTHO05D003220 4.7e-13 78.2 61 63.9
Oeu038612.1 Olea europaea HOM05D001366 ORTHO05D003220 6.2e-13 77.8 62 64.5
ECA234G4650 Erigeron canadensis HOM05D001366 ORTHO05D003220 5.2e-12 74.7 61 60.7
MELO3C011972.2 Cucumis melo HOM05D001366 ORTHO05D003220 6.8e-12 74.3 61 59.0
CsaV3_5G031320 Cucumis sativus L. HOM05D001366 ORTHO05D003220 1.5e-11 73.2 61 59.0
HanXRQChr12g0384161 Helianthus annuus HOM05D001366 ORTHO05D003220 3.4e-11 72.0 61 57.4
Os06g0498400 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D003220 3.4e-11 72.0 62 54.8
HPP92_003084 Vanilla planifolia HOM05D001366 ORTHO05D003220 3.4e-11 72.0 61 55.7
Sed0006405 Sechium edule HOM05D001366 ORTHO05D003220 4.4e-11 71.6 62 59.7
Sed0024840 Sechium edule HOM05D001366 ORTHO05D003220 5.8e-11 71.2 61 57.4
SGA_v2.0_scaffold228G43260 Striga asiatica HOM05D001366 ORTHO05D003220 7.5e-11 70.9 92 41.3
Mapoly0038s0029 Marchantia polymorpha HOM05D001366 ORTHO05D003220 3.7e-10 68.6 61 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4529 Anthoceros agrestis HOM05D001366 ORTHO05D003220 1.4e-09 66.6 61 49.2
Pp3c8_6520 Physcomitrium patens HOM05D001366 ORTHO05D003220 1.9e-09 66.2 61 50.8
Pp3c8_6536 Physcomitrium patens HOM05D001366 ORTHO05D003220 1.9e-09 66.2 61 50.8
Gohir.A01G159900 Gossypium hirsutum HOM05D001366 ORTHO05D003220 4.1e-09 65.1 68 52.9
SEGI_00676 Sequoiadendron giganteum HOM05D001366 ORTHO05D016428 4.1e-09 65.1 62 50.0
SEGI_00062 Sequoiadendron giganteum HOM05D001366 ORTHO05D016210 1.6e-08 63.2 61 50.8
Zm00001eb278140 Zea mays HOM05D001366 ORTHO05D003220 2.1e-08 62.8 64 50.0
MBI16_g27903_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 3.5e-08 62.0 66 43.9
Nn5g29817 Nelumbo nucifera HOM05D001366 ORTHO05D003220 1.7e-07 59.7 59 50.8
ATR0767G073 Amborella trichopoda HOM05D001366 ORTHO05D003220 3.0e-07 58.9 66 42.4
Pp3c3_11200 Physcomitrium patens HOM05D001366 ORTHO05D003220 3.0e-07 58.9 68 41.2
TAR628G1058 Trochodendron aralioides HOM05D001366 ORTHO05D003220 5.1e-07 58.2 66 42.4
QL09p018643 Quercus lobata HOM05D001366 ORTHO05D003220 3.3e-06 55.5 66 42.4
Dinv42591 Davidia involucrata HOM05D001366 ORTHO05D003220 4.3e-06 55.1 66 40.9
Hma1.2p1_0044F.1_g026380 Hydrangea macrophylla HOM05D001366 ORTHO05D016428 7.3e-06 54.3 62 50.0
Hma1.2p1_1861F.1_g305660 Hydrangea macrophylla HOM05D001366 ORTHO05D016428 9.5e-06 53.9 34 70.6
SMO347G0598 Selaginella moellendorffii HOM05D001366 ORTHO05D003220 9.5e-06 53.9 87 35.6


User provided reference genes

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