Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005617 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 9.5e-24 114.8 54 100.0
CSS0032219 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 3.0e-22 109.8 54 96.3
CSS0037608 Camellia sinensis var. sinensis HOM05D006931 ORTHO05D008782 3.0e-22 109.8 54 96.3
Dinv26621 Davidia involucrata HOM05D006931 ORTHO05D008782 2.0e-18 97.1 54 81.5
Actinidia09786 Actinidia chinensis HOM05D006931 ORTHO05D008782 2.7e-18 96.7 54 81.5
Rhsim06G0175400 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.0e-17 94.7 54 79.6
FvH4_6g40750 Fragaria vesca HOM05D006931 ORTHO05D008782 1.3e-17 94.4 54 77.8
FAN05G5053 Fragaria x ananassa HOM05D006931 ORTHO05D008782 1.3e-17 94.4 54 77.8
FAN14G4269 Fragaria x ananassa HOM05D006931 ORTHO05D008782 1.3e-17 94.4 54 77.8
Rhsim01G0212700 Rhododendron simsii HOM05D006931 ORTHO05D008782 1.3e-17 94.4 54 79.6
Aqoxy4G02238_Aqoxy4G02239 Aquilegia oxysepala HOM05D006931 ORTHO05D008782 1.7e-17 94.0 54 77.8
FAN02G4040 Fragaria x ananassa HOM05D006931 ORTHO05D008782 1.7e-17 94.0 54 77.8
Rhsim01G0200100 Rhododendron simsii HOM05D006931 ORTHO05D008782 3.9e-17 92.8 54 77.8
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 5.0e-17 92.4 54 75.9
RcHm_v2.0_Chr2g0156201 Rosa chinensis HOM05D006931 ORTHO05D008782 5.0e-17 92.4 54 75.9
QL04p061072 Quercus lobata HOM05D006931 ORTHO05D008782 2.5e-16 90.1 54 75.9
Lj8P135T27 Lonicera japonica HOM05D006931 ORTHO05D008782 5.6e-16 89.0 52 76.9
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 9.5e-16 88.2 53 77.4
Cfa014231 Carpinus fangiana HOM05D006931 ORTHO05D008782 1.2e-15 87.8 54 72.2
Prupe.3G199000 Prunus persica HOM05D006931 ORTHO05D008782 1.2e-15 87.8 54 74.1
QL04p060976 Quercus lobata HOM05D006931 ORTHO05D008782 1.2e-15 87.8 54 74.1
Haze_12642 Corylus avellana HOM05D006931 ORTHO05D008782 1.6e-15 87.4 54 70.4
Atru.chr1.3931 Acer truncatum HOM05D006931 ORTHO05D008782 2.1e-15 87.0 54 72.2
MD17G1115600 Malus domestica HOM05D006931 ORTHO05D008782 2.1e-15 87.0 54 70.4
Cc05_g02580 Coffea canephora HOM05D006931 ORTHO05D008782 2.8e-15 86.7 54 72.2
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 3.6e-15 86.3 54 70.4
PGR142G3220 Punica granatum HOM05D006931 ORTHO05D008782 4.7e-15 85.9 54 66.7
Nn3g20375 Nelumbo nucifera HOM05D006931 ORTHO05D008782 6.1e-15 85.5 54 70.4
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 8.0e-15 85.1 54 66.7
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 8.0e-15 85.1 53 71.7
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 8.0e-15 85.1 53 71.7
Nitab4.5_0001701g0020 Nicotiana tabacum HOM05D006931 ORTHO05D008782 1.0e-14 84.7 54 66.7
vmacro12097 Vaccinium macrocarpon HOM05D006931 ORTHO05D008782 1.0e-14 84.7 54 72.2
TAR629G3292 Trochodendron aralioides HOM05D006931 ORTHO05D008782 1.4e-14 84.3 54 70.4
DCAR_019687 Daucus carota HOM05D006931 ORTHO05D008782 1.8e-14 84.0 54 72.2
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 1.8e-14 84.0 54 70.4
Thhalv10024897m.g Eutrema salsugineum HOM05D006931 ORTHO05D008782 2.3e-14 83.6 54 68.5
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 2.3e-14 83.6 53 69.8
PGSC0003DMG400006142 Solanum tuberosum HOM05D006931 ORTHO05D008782 2.3e-14 83.6 54 64.8
CANSAT64G0807 Cannabis sativa HOM05D006931 ORTHO05D008782 3.1e-14 83.2 50 74.0
Cfa014237 Carpinus fangiana HOM05D006931 ORTHO05D008782 3.1e-14 83.2 54 66.7
Migut.B01087 Erythranthe guttata HOM05D006931 ORTHO05D008782 3.1e-14 83.2 54 66.7
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 3.1e-14 83.2 54 70.4
Sopen07g024110 Solanum pennellii HOM05D006931 ORTHO05D008782 4.0e-14 82.8 54 64.8
Manes.06G016000 Manihot esculenta HOM05D006931 ORTHO05D008782 5.2e-14 82.4 54 70.4
Sp7g24650 Schrenkiella parvula HOM05D006931 ORTHO05D008782 8.9e-14 81.6 54 66.7
Solyc07g047620.3 Solanum lycopersicum HOM05D006931 ORTHO05D008782 8.9e-14 81.6 54 63.0
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.2e-13 81.3 54 63.0
Oeu052201.2 Olea europaea HOM05D006931 ORTHO05D008782 1.2e-13 81.3 49 77.6
Peaxi162Scf00802g00211 Petunia axillaris HOM05D006931 ORTHO05D008782 1.5e-13 80.9 54 64.8
Peaxi162Scf70695g00002 Petunia axillaris HOM05D006931 ORTHO05D008782 1.5e-13 80.9 54 64.8
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 1.5e-13 80.9 54 68.5
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 2.0e-13 80.5 54 63.0
BraA01t01749Z Brassica rapa HOM05D003050 ORTHO05D003513 2.0e-13 80.5 54 66.7
Ciclev10018243m.g Citrus clementina HOM05D006931 ORTHO05D008782 2.0e-13 80.5 53 66.0
Lsat_1_v5_gn_2_33981 Lactuca sativa HOM05D001522 ORTHO05D008782 2.0e-13 80.5 54 63.0
MBI19_g25580_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 2.0e-13 80.5 54 64.8
MSTRG.10694 Avicennia marina HOM05D006931 ORTHO05D008782 2.6e-13 80.1 54 64.8
CARHR234290 Cardamine hirsuta HOM05D006931 ORTHO05D008782 2.6e-13 80.1 54 66.7
Duzib133G1060 Durio zibethinus HOM05D006931 ORTHO05D008782 2.6e-13 80.1 53 69.8
MBI19_g25579_MAGBIO Magnolia biondii HOM05D006931 ORTHO05D008782 2.6e-13 80.1 54 64.8
Atru.chr6.3406 Acer truncatum HOM05D006931 ORTHO05D008782 3.4e-13 79.7 50 68.0
CAN.G805.1 Capsicum annuum HOM05D006931 ORTHO05D008782 3.4e-13 79.7 54 64.8
Aa31LG5G12250 Aethionema arabicum HOM05D006931 ORTHO05D008782 4.4e-13 79.3 54 64.8
AT4G26680 Arabidopsis thaliana HOM05D006931 ORTHO05D008782 4.4e-13 79.3 54 64.8
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 4.4e-13 79.3 54 64.8
BcaC09g52253 Brassica carinata HOM05D006931 ORTHO05D008782 4.4e-13 79.3 54 64.8
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 4.4e-13 79.3 54 66.7
Gohir.A07G164200 Gossypium hirsutum HOM05D006931 ORTHO05D008782 5.8e-13 79.0 53 67.9
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 5.8e-13 79.0 54 66.7
AUR62003544 Chenopodium quinoa HOM05D006931 ORTHO05D008782 7.5e-13 78.6 50 70.0
AUR62017857 Chenopodium quinoa HOM05D006931 ORTHO05D008782 7.5e-13 78.6 50 70.0
C01p22740 Brassica napus HOM05D003050 ORTHO05D003513 9.8e-13 78.2 54 63.0
Hund23024 Selenicereus undatus HOM05D006931 ORTHO05D008782 1.3e-12 77.8 54 64.8
SGA_v2.0_scaffold347G49544 Striga asiatica HOM05D006931 ORTHO05D008782 1.3e-12 77.8 54 68.5
THA.LOC104808862 Tarenaya hassleriana HOM05D006931 ORTHO05D008782 1.7e-12 77.4 54 64.8
Ah.10g034380 Amaranthus hybridus HOM05D006931 ORTHO05D008782 2.9e-12 76.6 54 63.0
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 2.9e-12 76.6 54 61.1
Nitab4.5_0001774g0100 Nicotiana tabacum HOM05D006931 ORTHO05D008782 2.9e-12 76.6 54 61.1
A01p17940 Brassica napus HOM05D003050 ORTHO05D003513 3.7e-12 76.3 54 63.0
AUR62015178 Chenopodium quinoa HOM05D006931 ORTHO05D008782 3.7e-12 76.3 50 66.0
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 3.7e-12 76.3 54 61.1
Cpa.g.sc211.20 Carica papaya HOM05D006931 ORTHO05D008782 6.4e-12 75.5 53 64.2
BcaC09g50628 Brassica carinata HOM05D006931 ORTHO05D008782 1.1e-11 74.7 54 61.1
BolC1t02203H Brassica oleracea HOM05D003050 ORTHO05D003513 1.1e-11 74.7 54 61.1
Carub.0007s1417 Capsella rubella HOM05D006931 ORTHO05D008782 1.4e-11 74.3 54 59.3
Hma1.2p1_0253F.1_g103010 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 2.4e-11 73.6 48 66.7
Hma1.2p1_2484F.1_g323040 Hydrangea macrophylla HOM05D006931 ORTHO05D008782 2.4e-11 73.6 48 66.7
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 2.4e-11 73.6 54 61.1
HPP92_013549 Vanilla planifolia HOM05D006931 ORTHO05D008782 2.4e-11 73.6 54 59.3
CiPaw.03G280700 Carya illinoinensis HOM05D006931 ORTHO05D008782 1.2e-10 71.2 46 69.6
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 1.6e-10 70.9 54 57.4
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 1.6e-10 70.9 54 57.4
Medtr7g090340 Medicago truncatula HOM05D006931 ORTHO05D008782 1.6e-10 70.9 54 53.7
SalBow1G4479 Salvia bowleyana HOM05D006931 ORTHO05D008782 2.0e-10 70.5 51 62.7
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 4.6e-10 69.3 49 63.3
Phvul.010G143400 Phaseolus vulgaris HOM05D006931 ORTHO05D008782 1.3e-09 67.8 52 61.5
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 1.3e-09 67.8 52 61.5
Sc07g0001940 Simmondsia chinensis HOM05D006931 ORTHO05D008782 1.7e-09 67.4 47 59.6
Cfa014238 Carpinus fangiana HOM05D006931 ORTHO05D008782 3.0e-09 66.6 57 54.4
RcHm_v2.0_Chr4g0385181 Rosa chinensis HOM05D006931 ORTHO05D008782 5.0e-09 65.9 41 70.7
AL7G26160 Arabidopsis lyrata HOM05D006931 ORTHO05D008782 6.6e-09 65.5 43 67.4
Eucgr.G01771 Eucalyptus grandis HOM05D006931 ORTHO05D008782 1.5e-08 64.3 47 53.2
Manes.05G013300 Manihot esculenta HOM05D006931 ORTHO05D015207 1.9e-08 63.9 44 68.2
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 2.5e-08 63.5 54 48.1
Psat4g195880 Pisum sativum HOM05D006931 ORTHO05D008782 5.6e-08 62.4 52 48.1
Dinv21282 Davidia involucrata HOM05D006931 ORTHO05D028388 9.5e-08 61.6 37 81.1
CSS0018793 Camellia sinensis var. sinensis HOM05D035608 ORTHO05D028388 2.8e-07 60.1 30 96.7
CSS0041905 Camellia sinensis var. sinensis HOM05D035608 ORTHO05D028388 3.1e-06 56.6 28 96.4
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.1e-06 56.6 52 53.8


User provided reference genes

Program Settings