Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005566 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 2.8e-88 328.6 164 100.0
CSS0016523 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 7.0e-63 244.2 228 62.3
CSS0036517 Camellia sinensis var. sinensis HOM05D005776 ORTHO05D007333 7.0e-63 244.2 228 62.3
Actinidia12087 Actinidia chinensis HOM05D005776 ORTHO05D007333 1.2e-54 216.9 176 66.5
Rhsim10G0126200 Rhododendron simsii HOM05D005776 ORTHO05D007333 2.9e-53 212.2 176 64.2
vmacro11025 Vaccinium macrocarpon HOM05D005776 ORTHO05D007333 3.8e-53 211.8 207 58.5
Haze_15167 Corylus avellana HOM05D005776 ORTHO05D007333 5.0e-53 211.5 176 65.3
Phvul.002G023500 Phaseolus vulgaris HOM05D005776 ORTHO05D007333 6.5e-53 211.1 176 63.6
Psat2g163800 Pisum sativum HOM05D005776 ORTHO05D007333 1.1e-52 210.3 176 63.1
Ca_24808_v3 Cicer arietinum L. HOM05D005776 ORTHO05D007333 1.5e-52 209.9 176 62.5
VMungo1215G2372 Vigna mungo HOM05D005776 ORTHO05D007333 1.5e-52 209.9 176 63.1
Medtr5g018580 Medicago truncatula HOM05D005776 ORTHO05D007333 1.9e-52 209.5 176 63.1
Hma1.2p1_0739F.1_g211300 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 2.5e-52 209.1 176 63.6
Cfa004232 Carpinus fangiana HOM05D005776 ORTHO05D007333 3.3e-52 208.8 176 64.2
TPR.G29855 Trifolium pratense HOM05D005776 ORTHO05D007333 4.2e-52 208.4 176 62.5
QL06p044240 Quercus lobata HOM05D005776 ORTHO05D007333 5.5e-52 208.0 175 63.4
Manes.12G094700 Manihot esculenta HOM05D005776 ORTHO05D007333 9.5e-52 207.2 176 62.5
arahy.Tifrunner.gnm1.ann1.41BUH4 Arachis hypogaea HOM05D005776 ORTHO05D007333 1.2e-51 206.8 176 63.1
arahy.Tifrunner.gnm1.ann1.TE9NQ7 Arachis hypogaea HOM05D005776 ORTHO05D007333 1.2e-51 206.8 176 63.1
Eucgr.H01941 Eucalyptus grandis HOM05D005776 ORTHO05D007333 2.1e-51 206.1 176 63.1
Glyma.01G182500 Glycine max HOM05D005776 ORTHO05D007333 2.1e-51 206.1 165 66.7
Cfa017515 Carpinus fangiana HOM05D005776 ORTHO05D007333 2.8e-51 205.7 176 63.6
GSVIVG01003777001 Vitis vinifera HOM05D005776 ORTHO05D007333 8.0e-51 204.1 175 62.9
Ciclev10026303m.g Citrus clementina HOM05D005776 ORTHO05D007333 1.0e-50 203.8 172 62.8
Thecc.02G289200 Theobroma cacao HOM05D005776 ORTHO05D007333 1.8e-50 203.0 170 63.5
Aqoxy6G00958 Aquilegia oxysepala HOM05D005776 ORTHO05D007333 2.3e-50 202.6 167 64.1
Duzib251G0151 Durio zibethinus HOM05D005776 ORTHO05D007333 2.3e-50 202.6 170 63.5
Oeu032924.1 Olea europaea HOM05D005776 ORTHO05D007333 2.3e-50 202.6 165 64.8
Prupe.7G145200 Prunus persica HOM05D005776 ORTHO05D007333 2.3e-50 202.6 176 61.9
CANSAT25G0990 Cannabis sativa HOM05D005776 ORTHO05D007333 3.0e-50 202.2 174 63.2
CiPaw.01G029000 Carya illinoinensis HOM05D005776 ORTHO05D007333 4.0e-50 201.8 176 62.5
CsaV3_6G042720 Cucumis sativus L. HOM05D005776 ORTHO05D007333 8.9e-50 200.7 176 61.9
Lj2g0005971 Lotus japonicus HOM05D005776 ORTHO05D007333 8.9e-50 200.7 176 60.8
Cc07_g19620 Coffea canephora HOM05D005776 ORTHO05D007333 1.2e-49 200.3 165 64.8
MD15G1273400 Malus domestica HOM05D005776 ORTHO05D007333 1.2e-49 200.3 176 62.5
ClCG01G016400 Citrullus lanatus HOM05D005776 ORTHO05D007333 1.5e-49 199.9 176 60.8
FAN19G1930 Fragaria x ananassa HOM05D005776 ORTHO05D007333 2.0e-49 199.5 176 61.4
Lj4A136T80 Lonicera japonica HOM05D005776 ORTHO05D007333 2.6e-49 199.1 176 61.9
Lalb_Chr09g0333671 Lupinus albus HOM05D005776 ORTHO05D007333 2.6e-49 199.1 176 59.7
SGA_v2.0_scaffold10G05128 Striga asiatica HOM05D005776 ORTHO05D007333 2.6e-49 199.1 165 65.5
TWI09G1011 Tripterygium wilfordii HOM05D005776 ORTHO05D007333 2.6e-49 199.1 176 60.8
COL.COLO4_13087 Corchorus olitorius HOM05D005776 ORTHO05D007333 3.4e-49 198.7 174 61.5
MD02G1158600 Malus domestica HOM05D005776 ORTHO05D007333 3.4e-49 198.7 176 61.4
Ah.10g034500 Amaranthus hybridus HOM05D000575 ORTHO05D004448 4.4e-49 198.4 176 58.5
Gohir.A03G118800 Gossypium hirsutum HOM05D005776 ORTHO05D007333 4.4e-49 198.4 170 62.4
Gohir.D02G141600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 4.4e-49 198.4 170 62.4
Gorai.005G159700 Gossypium raimondii HOM05D005776 ORTHO05D007333 4.4e-49 198.4 170 62.4
PGR102G0103 Punica granatum HOM05D005776 ORTHO05D007333 4.4e-49 198.4 176 60.2
Hund05302 Selenicereus undatus HOM05D005776 ORTHO05D007333 4.4e-49 198.4 176 60.2
COL.COLO4_07276 Corchorus olitorius HOM05D005776 ORTHO05D007333 5.7e-49 198.0 174 60.9
FvH4_1g14520 Fragaria vesca HOM05D005776 ORTHO05D007333 5.7e-49 198.0 176 60.8
FAN23G2656 Fragaria x ananassa HOM05D005776 ORTHO05D007333 5.7e-49 198.0 176 60.8
FAN28G0587 Fragaria x ananassa HOM05D005776 ORTHO05D007333 5.7e-49 198.0 176 60.8
HanXRQChr12g0378471 Helianthus annuus HOM05D005776 ORTHO05D007333 5.7e-49 198.0 176 61.4
EL10Ac2g03922 Beta vulgaris HOM05D005776 ORTHO05D007333 7.5e-49 197.6 176 59.1
FAN26G3400 Fragaria x ananassa HOM05D005776 ORTHO05D007333 9.8e-49 197.2 176 60.2
unitig_578.g16073 Utricularia gibba HOM05D005776 ORTHO05D007333 9.8e-49 197.2 164 64.0
Sed0000268 Sechium edule HOM05D005776 ORTHO05D007333 1.3e-48 196.8 176 60.2
AUR62009176 Chenopodium quinoa HOM05D005776 ORTHO05D007333 3.7e-48 195.3 176 58.5
RcHm_v2.0_Chr2g0103261 Rosa chinensis HOM05D005776 ORTHO05D007333 3.7e-48 195.3 176 59.7
Sabra07G0030000 Salix brachista HOM05D005776 ORTHO05D007333 3.7e-48 195.3 176 61.4
SalBow1G0426 Salvia bowleyana HOM05D005776 ORTHO05D007333 3.7e-48 195.3 177 61.0
SalBow1G6751 Salvia bowleyana HOM05D005776 ORTHO05D007333 3.7e-48 195.3 177 61.0
Peaxi162Scf00235g00723 Petunia axillaris HOM05D005776 ORTHO05D007333 4.9e-48 194.9 177 60.5
MSTRG.3404 Avicennia marina HOM05D005776 ORTHO05D007333 8.3e-48 194.1 177 59.3
MELO3C007510.2 Cucumis melo HOM05D005776 ORTHO05D007333 8.3e-48 194.1 182 59.9
TAR628G1436 Trochodendron aralioides HOM05D005776 ORTHO05D007333 8.3e-48 194.1 165 63.6
CDE02G0814 Ceratophyllum demersum HOM05D005776 ORTHO05D007333 1.1e-47 193.7 172 60.5
ECA246G4011 Erigeron canadensis HOM05D005776 ORTHO05D007333 1.4e-47 193.4 176 60.2
Aa31LG6G13780 Aethionema arabicum HOM05D005776 ORTHO05D007333 1.8e-47 193.0 176 58.5
Cpa.g.sc15.62 Carica papaya HOM05D005776 ORTHO05D007333 3.1e-47 192.2 176 59.1
Lsat_1_v5_gn_3_94020 Lactuca sativa HOM05D005776 ORTHO05D007333 3.1e-47 192.2 176 58.5
AUR62022050 Chenopodium quinoa HOM05D005776 ORTHO05D007333 4.1e-47 191.8 176 57.4
Nitab4.5_0000984g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 7.0e-47 191.0 177 59.3
THA.LOC104804218 Tarenaya hassleriana HOM05D005776 ORTHO05D007333 7.0e-47 191.0 172 59.3
A01p02000 Brassica napus HOM05D005776 ORTHO05D007333 9.2e-47 190.7 176 58.0
C01p02180 Brassica napus HOM05D005776 ORTHO05D007333 9.2e-47 190.7 176 58.0
BolC1t00210H Brassica oleracea HOM05D005776 ORTHO05D007333 9.2e-47 190.7 176 58.0
BraA01t00188Z Brassica rapa HOM05D005776 ORTHO05D007333 9.2e-47 190.7 176 58.0
CAN.G337.59 Capsicum annuum HOM05D005776 ORTHO05D007333 9.2e-47 190.7 170 59.4
Carub.0007s0339 Capsella rubella HOM05D005776 ORTHO05D007333 2.0e-46 189.5 176 57.4
Potri.007G034400 Populus trichocarpa HOM05D005776 ORTHO05D007333 2.0e-46 189.5 176 60.2
Solyc07g064940.3 Solanum lycopersicum HOM05D005776 ORTHO05D007333 2.7e-46 189.1 176 56.2
PGSC0003DMG400022206 Solanum tuberosum HOM05D005776 ORTHO05D007333 3.5e-46 188.7 176 56.2
AL7G14000 Arabidopsis lyrata HOM05D005776 ORTHO05D007333 4.5e-46 188.3 176 56.8
Os03g0767500 Oryza sativa ssp. japonica HOM05D005776 ORTHO05D007333 4.5e-46 188.3 181 58.0
Sp7g34590 Schrenkiella parvula HOM05D005776 ORTHO05D007333 5.9e-46 188.0 176 57.4
ATR0733G088 Amborella trichopoda HOM05D005776 ORTHO05D007333 7.8e-46 187.6 172 57.0
Sopen07g033140 Solanum pennellii HOM05D005776 ORTHO05D007333 1.0e-45 187.2 176 56.2
Thhalv10026051m.g Eutrema salsugineum HOM05D005776 ORTHO05D007333 1.7e-45 186.4 176 56.8
MBI16_g29183_MAGBIO Magnolia biondii HOM05D005776 ORTHO05D007333 3.8e-45 185.3 171 60.8
AT4G37200 Arabidopsis thaliana HOM05D005776 ORTHO05D007333 5.0e-45 184.9 176 55.7
Nitab4.5_0002826g0010 Nicotiana tabacum HOM05D005776 ORTHO05D007333 8.6e-45 184.1 175 57.1
Sc15g0005670 Simmondsia chinensis HOM05D005776 ORTHO05D007333 1.9e-44 183.0 156 62.8
Migut.K00840 Erythranthe guttata HOM05D005776 ORTHO05D007333 5.6e-44 181.4 167 61.1
HPP92_012224 Vanilla planifolia HOM05D005776 ORTHO05D007333 5.6e-44 181.4 176 53.4
Atru.chr3.470 Acer truncatum HOM05D005776 ORTHO05D007333 9.5e-44 180.6 158 60.8
Duzib268G1673 Durio zibethinus HOM05D005776 ORTHO05D007333 2.1e-43 179.5 170 56.5
Zm00001eb213990 Zea mays HOM05D005776 ORTHO05D007333 4.7e-43 178.3 177 55.9
PSO675G1056 Papaver somniferum HOM05D005776 ORTHO05D007333 4.0e-42 175.3 174 54.6
PSO541G0480 Papaver somniferum HOM05D001143 ORTHO05D007333 8.9e-42 174.1 173 54.3
Glyma.11G060800 Glycine max HOM05D005776 ORTHO05D007333 3.5e-38 162.2 134 62.7
MD17G1248400 Malus domestica HOM05D005776 ORTHO05D007333 1.5e-36 156.8 147 59.2
Nn6g32162 Nelumbo nucifera HOM05D005776 ORTHO05D007333 9.5e-36 154.1 133 60.9
Gohir.A03G118600 Gossypium hirsutum HOM05D005776 ORTHO05D007333 1.6e-35 153.3 129 62.0
SMO329G0044 Selaginella moellendorffii HOM05D005776 ORTHO05D007333 4.0e-34 148.7 168 48.2
Mapoly0011s0067 Marchantia polymorpha HOM05D005776 ORTHO05D007333 3.7e-32 142.1 166 47.6
CARHR245310 Cardamine hirsuta HOM05D005776 ORTHO05D007333 2.4e-31 139.4 84 78.6
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 2.4e-31 139.4 168 47.0
CDE01G0348 Ceratophyllum demersum HOM05D001852 ORTHO05D001989 3.2e-31 139.0 84 78.6
TAR625G0250 Trochodendron aralioides HOM05D005776 ORTHO05D007333 1.6e-30 136.7 84 78.6
AagrBONN_evm.TU.Sc2ySwM_344.5430 Anthoceros agrestis HOM05D005776 ORTHO05D007333 7.8e-30 134.4 171 45.6
Gorai.005G159300 Gossypium raimondii HOM05D005776 ORTHO05D007333 6.8e-26 121.3 137 52.6
BcaNung03515 Brassica carinata HOM05D005776 ORTHO05D007333 1.3e-24 117.1 127 51.2
BolC1t00269H Brassica oleracea HOM05D005776 ORTHO05D007333 2.2e-24 116.3 70 77.1
BcaNung00756 Brassica carinata HOM05D005776 ORTHO05D007333 1.6e-22 110.2 70 74.3
C01p02790 Brassica napus HOM05D005776 ORTHO05D007333 1.6e-22 110.2 70 74.3
Gohir.D02G142060 Gossypium hirsutum HOM05D005776 ORTHO05D007333 2.1e-22 109.8 121 53.7
CBR_g30695 Chara braunii HOM05D005776 ORTHO05D007333 2.3e-21 106.3 183 37.2
Hma1.2p1_0739F.1_g211290 Hydrangea macrophylla HOM05D005776 ORTHO05D007333 7.1e-15 84.7 62 69.4
MCO15G478 Micromonas commoda HOM05D005776 ORTHO05D007333 1.6e-14 83.6 135 36.3
PRCOL_00004254 Prasinoderma coloniale HOM05D005776 ORTHO05D007333 4.3e-12 75.5 174 30.5
CARHR245300 Cardamine hirsuta HOM05D005776 ORTHO05D007333 5.6e-12 75.1 62 58.1
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 2.4e-10 69.7 173 30.1
Lsat_1_v5_gn_5_160121 Lactuca sativa HOM05D005776 ORTHO05D007333 3.1e-10 69.3 62 56.5
Lalb_Chr05g0227121 Lupinus albus HOM05D005776 ORTHO05D007333 4.0e-10 68.9 85 49.4
BolC1t00607H Brassica oleracea HOM05D005776 ORTHO05D007333 7.6e-09 64.7 40 72.5
Dinv26775 Davidia involucrata HOM05D005776 ORTHO05D007333 3.2e-07 59.3 63 50.8


User provided reference genes

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