Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005564 Camellia sinensis var. sinensis HOM05D001200 ORTHO05D002731 1.7e-87 325.9 156 100.0
CSS0038532 Camellia sinensis var. sinensis HOM05D001200 ORTHO05D002731 3.1e-84 315.1 156 96.8
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 5.7e-30 134.8 206 43.7
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 5.7e-30 134.8 206 43.7
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 1.3e-29 133.7 186 45.2
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 5.3e-28 128.3 206 42.2
Gorai.006G071400 Gossypium raimondii HOM05D001200 ORTHO05D002731 2.6e-27 125.9 91 72.5
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 40.8
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 40.8
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 40.8
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 40.8
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 40.8
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 1.3e-26 123.6 206 41.3
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 5.0e-26 121.7 206 39.8
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 5.0e-26 121.7 206 39.8
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 5.0e-26 121.7 206 39.8
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 5.0e-26 121.7 206 39.8
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 6.5e-26 121.3 206 39.8
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 6.5e-26 121.3 206 39.8
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 8.5e-26 120.9 206 39.8
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 1.1e-25 120.6 136 52.2
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 1.4e-25 120.2 206 39.3
Oeu053979.1 Olea europaea HOM05D001200 ORTHO05D002731 1.4e-25 120.2 154 48.7
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 1.4e-25 120.2 206 39.3
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 1.9e-25 119.8 206 39.8
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 3.2e-25 119.0 206 39.8
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 3.2e-25 119.0 206 39.8
BolSC46t60960H Brassica oleracea HOM05D001200 ORTHO05D002731 4.2e-25 118.6 136 50.7
Migut.D01384 Erythranthe guttata HOM05D001200 ORTHO05D002731 4.2e-25 118.6 108 59.3
GSVIVG01004976001 Vitis vinifera HOM05D001200 ORTHO05D010401 7.2e-25 117.9 139 50.4
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 9.4e-25 117.5 206 39.3
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 2.7e-24 115.9 136 50.0
BolC2t10611H Brassica oleracea HOM05D001200 ORTHO05D002731 2.7e-24 115.9 136 50.0
Hund29438 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.7e-24 115.9 109 58.7
C06p42250 Brassica napus HOM05D001200 ORTHO05D002731 1.0e-23 114.0 133 49.6
Hund08793 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund12716 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund12843 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund23968 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund27631 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund27678 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund27755 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund27831 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28438 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28448 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28536 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28587 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28596 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28613 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28850 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28880 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28937 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28946 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28951 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28954 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28961 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28974 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund28979 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29026 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29089 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29109 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29179 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29186 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29244 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29247 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29251 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29254 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29261 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29273 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29277 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29281 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29285 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29288 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29316 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29434 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29453 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29499 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29654 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29713 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29755 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29814 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund29818 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund30036 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund30039 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund30120 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund30177 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund30365 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
Hund30388 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.8e-23 113.2 116 55.2
MD04G1189100 Malus domestica HOM05D001200 ORTHO05D002731 5.1e-23 111.7 114 55.3
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 6.7e-23 111.3 206 37.9
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 6.7e-23 111.3 206 37.9
arahy.Tifrunner.gnm1.ann1.2QK9Z7 Arachis hypogaea HOM05D001200 ORTHO05D002731 9.7e-22 107.5 133 46.6
Gohir.A01G143400 Gossypium hirsutum HOM05D001200 ORTHO05D002731 6.3e-21 104.8 179 39.7
Migut.D01255 Erythranthe guttata HOM05D001200 ORTHO05D010401 3.1e-20 102.4 121 52.9
Medtr4g106580 Medicago truncatula HOM05D001200 ORTHO05D002731 9.1e-20 100.9 88 62.5
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 1.2e-19 100.5 165 40.6
Ciclev10030459m.g Citrus clementina HOM05D001200 ORTHO05D010401 2.6e-19 99.4 128 46.9
Medtr2g103350 Medicago truncatula HOM05D001200 ORTHO05D002731 1.7e-18 96.7 125 47.2
Medtr7g108460 Medicago truncatula HOM05D001200 ORTHO05D002731 2.2e-18 96.3 127 46.5
Medtr3g073110 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-17 93.2 128 45.3
RcHm_v2.0_CPg0502801 Rosa chinensis HOM05D001200 ORTHO05D002731 1.9e-17 93.2 104 50.0
Ciclev10006660m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.2e-17 92.4 101 50.5
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 3.2e-17 92.4 206 33.5
arahy.Tifrunner.gnm1.ann1.D1ZPVC Arachis hypogaea HOM05D001200 ORTHO05D002731 4.2e-17 92.0 82 62.2
BolSC44t60820H Brassica oleracea HOM05D001200 ORTHO05D002731 4.2e-17 92.0 71 64.8
Ciclev10010880m.g Citrus clementina HOM05D001200 ORTHO05D002731 7.2e-17 91.3 71 63.4
HanXRQChr08g0211971 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-16 89.7 71 63.4
BraSC59t46528Z Brassica rapa HOM05D001200 ORTHO05D002731 2.7e-16 89.4 69 63.8
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 3.6e-16 89.0 101 49.5
BolSC29t60544H Brassica oleracea HOM05D001200 ORTHO05D002731 4.7e-16 88.6 72 63.9
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 4.7e-16 88.6 94 53.2
Ciclev10013969m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.3e-15 86.3 68 61.8
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.3e-15 86.3 68 61.8
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.3e-15 86.3 68 61.8
BolSC47t61066H Brassica oleracea HOM05D001200 ORTHO05D002731 3.9e-15 85.5 47 83.0
Lalb_Chr23g0274791 Lupinus albus HOM05D001200 ORTHO05D002731 3.9e-15 85.5 66 68.2
Peaxi162Scf01164g00035 Petunia axillaris HOM05D001200 ORTHO05D002731 3.9e-15 85.5 95 51.6
Medtr2g042860 Medicago truncatula HOM05D001200 ORTHO05D002731 1.5e-14 83.6 106 46.2
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 1.5e-14 83.6 91 51.6
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 4.4e-14 82.0 66 60.6
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 7.4e-14 81.3 53 77.4
Medtr5g099080 Medicago truncatula HOM05D001200 ORTHO05D002731 2.8e-13 79.3 85 51.8
BolC2t08908H Brassica oleracea HOM05D001200 ORTHO05D002731 3.7e-13 79.0 47 76.6
CsaV3_UNG210140 Cucumis sativus L. HOM05D001200 ORTHO05D002731 3.7e-13 79.0 47 78.7
Medtr7g012690 Medicago truncatula HOM05D001200 ORTHO05D002731 3.7e-13 79.0 102 48.0
Medtr1g081540 Medicago truncatula HOM05D001200 ORTHO05D002731 1.1e-12 77.4 91 50.5
Medtr4g080900 Medicago truncatula HOM05D001200 ORTHO05D002731 1.8e-12 76.6 160 34.4
Medtr7g075220 Medicago truncatula HOM05D000504 ORTHO05D002731 3.1e-12 75.9 134 38.8
Medtr2g048620 Medicago truncatula HOM05D001200 ORTHO05D002731 9.1e-12 74.3 85 50.6
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.2e-11 73.9 68 60.3
Medtr3g082380 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-11 73.2 115 44.3
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.5e-11 72.4 153 36.6
Medtr3g109440 Medicago truncatula HOM05D001200 ORTHO05D002731 3.5e-11 72.4 88 50.0
Medtr5g032430 Medicago truncatula HOM05D001200 ORTHO05D002731 3.5e-11 72.4 111 45.0
HanXRQChr00c0328g0573601 Helianthus annuus HOM05D001200 ORTHO05D002731 4.5e-11 72.0 38 89.5
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-11 71.6 108 42.6
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 5.9e-11 71.6 108 42.6
Lsat_1_v5_gn_1_14200 Lactuca sativa HOM05D001200 ORTHO05D002731 1.0e-10 70.9 38 86.8
SMO086G0020 Selaginella moellendorffii HOM05D001200 ORTHO05D002731 2.2e-10 69.7 161 31.1
Medtr7g086590 Medicago truncatula HOM05D001200 ORTHO05D002731 2.9e-10 69.3 59 57.6
Medtr3g071600 Medicago truncatula HOM05D001200 ORTHO05D002731 5.0e-10 68.6 92 45.7
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 8.5e-10 67.8 48 70.8
Medtr5g089040 Medicago truncatula HOM05D001200 ORTHO05D002731 8.5e-10 67.8 120 37.5
Oeu012819.1 Olea europaea HOM05D001200 ORTHO05D002731 8.5e-10 67.8 77 48.1
HanXRQChr07g0204721 Helianthus annuus HOM05D001200 ORTHO05D002731 4.2e-09 65.5 37 81.1
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 5.5e-09 65.1 35 80.0
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 9.4e-09 64.3 108 39.8
Phvul.002G050301 Phaseolus vulgaris HOM05D001200 ORTHO05D002731 9.4e-09 64.3 108 38.9
Medtr0148s0110 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-08 63.9 39 76.9
Medtr4g086110 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-08 63.9 117 36.8
Solyc11g021213.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 1.6e-08 63.5 104 40.4
Medtr5g464700 Medicago truncatula HOM05D001200 ORTHO05D002731 2.7e-08 62.8 88 43.2
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 3.6e-08 62.4 108 38.0
Gohir.A13G109925 Gossypium hirsutum HOM05D001200 ORTHO05D002731 3.6e-08 62.4 39 74.4
Hund03917 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.7e-08 62.0 44 72.7
Solyc02g011750.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 4.7e-08 62.0 63 52.4
TPR.G24765 Trifolium pratense HOM05D001200 ORTHO05D002731 4.7e-08 62.0 38 76.3
Medtr5g021300 Medicago truncatula HOM05D001200 ORTHO05D002731 8.0e-08 61.2 85 45.9
Pp3c2_10430 Physcomitrium patens HOM05D001200 ORTHO05D002731 8.0e-08 61.2 43 60.5
Medtr1g085100 Medicago truncatula HOM05D001200 ORTHO05D002731 1.0e-07 60.8 46 65.2
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 1.4e-07 60.5 38 71.1
Solyc01g065610.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 1.8e-07 60.1 44 68.2
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 6.7e-07 58.2 108 38.0
Medtr1g103000 Medicago truncatula HOM05D001200 ORTHO05D002731 8.8e-07 57.8 38 68.4
Medtr8g086440 Medicago truncatula HOM05D001200 ORTHO05D002731 8.8e-07 57.8 38 65.8
CAN.G95.10 Capsicum annuum HOM05D001200 ORTHO05D002731 2.0e-06 56.6 37 75.7
Medtr3g008330 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-06 56.6 98 34.7
Solyc01g065630.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 2.0e-06 56.6 48 60.4
BolC7t43854H Brassica oleracea HOM05D001200 ORTHO05D002731 3.3e-06 55.8 38 73.7
Lalb_Chr07g0191751 Lupinus albus HOM05D001200 ORTHO05D002731 3.3e-06 55.8 95 36.8
Medtr5g094180 Medicago truncatula HOM05D001200 ORTHO05D002731 3.3e-06 55.8 44 61.4
Medtr8g056200 Medicago truncatula HOM05D001200 ORTHO05D002731 4.4e-06 55.5 42 61.9
Medtr4g128700 Medicago truncatula HOM05D001200 ORTHO05D002731 5.7e-06 55.1 42 61.9
Medtr3g114440 Medicago truncatula HOM05D001200 ORTHO05D002731 9.7e-06 54.3 47 57.4


User provided reference genes

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