Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 9.5e-298 1026.2 548 100.0
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.5e-295 1016.5 548 99.3
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.8e-179 631.3 586 65.4
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.3e-174 617.1 572 64.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-170 603.6 580 62.1
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 1.6e-159 567.0 625 57.9
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 7.6e-154 548.1 634 56.6
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.3e-150 536.6 574 59.4
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.9e-144 516.9 376 74.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.2e-144 516.2 561 56.0
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.8e-140 503.1 562 56.8
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 9.6e-133 478.0 443 65.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 8.1e-132 474.9 575 54.1
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 4.0e-131 472.6 556 53.6
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.5e-130 470.7 558 52.3
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.2e-129 466.8 574 52.8
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.1e-128 464.5 546 52.0
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 4.2e-128 462.6 549 51.5
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 1.2e-127 461.1 552 53.4
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 4.6e-127 459.1 546 54.8
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 7.9e-127 458.4 560 53.0
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 7.9e-127 458.4 569 51.7
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.0e-126 458.0 528 53.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 3.9e-126 456.1 573 50.3
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 3.9e-126 456.1 575 53.0
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 2.8e-124 449.9 553 51.0
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.8e-124 449.9 581 51.5
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.4e-123 447.6 379 66.2
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 5.3e-123 445.7 562 50.0
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.6e-122 443.4 553 52.3
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.7e-121 440.7 542 50.4
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.7e-121 440.7 540 50.2
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 6.5e-121 438.7 558 50.5
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 6.5e-121 438.7 546 51.1
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 3.2e-120 436.4 559 49.9
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 3.2e-120 436.4 559 49.9
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.2e-119 434.5 559 49.2
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 2.7e-119 433.3 388 64.2
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 6.0e-119 432.2 557 49.9
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 3.9e-118 429.5 585 49.1
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 5.1e-118 429.1 576 49.7
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.1e-117 427.9 538 51.3
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 2.5e-117 426.8 561 50.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 4.3e-117 426.0 533 54.0
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-116 424.5 562 49.6
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.6e-116 424.1 556 50.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.1e-116 423.7 558 49.5
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.1e-116 423.7 578 49.0
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 3.7e-116 422.9 490 57.3
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 6.3e-116 422.2 553 48.6
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.3e-116 422.2 553 48.6
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.1e-115 421.4 375 62.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.1e-115 419.5 553 48.3
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.9e-115 418.7 555 48.8
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 9.0e-115 418.3 558 48.7
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.2e-114 417.9 545 48.6
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.2e-114 417.9 598 47.2
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 3.4e-114 416.4 557 48.8
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 7.6e-114 415.2 539 50.8
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.2e-113 413.7 568 48.1
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.9e-112 410.6 587 47.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.9e-112 410.6 545 49.4
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 7.2e-112 408.7 539 51.0
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 3.5e-111 406.4 567 48.1
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.3e-110 404.4 550 50.0
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.8e-110 404.1 550 48.4
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 3.0e-110 403.3 558 48.2
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 3.0e-110 403.3 558 48.2
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 1.9e-109 400.6 611 46.8
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 5.7e-109 399.1 383 59.8
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 5.7e-109 399.1 581 46.3
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 7.4e-109 398.7 580 50.5
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 9.7e-109 398.3 580 47.6
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.3e-108 395.6 317 68.1
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 6.9e-107 392.1 564 46.5
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 4.5e-106 389.4 556 47.3
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 7.7e-106 388.7 570 47.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.4e-104 384.4 542 51.5
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.6e-103 380.9 384 57.6
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 1.6e-103 380.9 584 45.0
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 4.6e-103 379.4 569 45.3
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 6.1e-103 379.0 414 55.6
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 6.1e-103 379.0 549 47.5
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 7.9e-103 378.6 424 54.0
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 7.9e-103 378.6 384 57.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 3.0e-102 376.7 571 45.4
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 6.7e-102 375.6 279 71.0
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.1e-101 374.8 389 57.6
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.2e-100 370.5 547 46.4
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 3.7e-100 369.8 559 46.5
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.8e-99 367.5 387 56.8
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 1.8e-99 367.5 386 56.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 4.1e-99 366.3 554 46.2
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 4.1e-99 366.3 387 56.6
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 4.1e-99 366.3 387 56.6
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 5.3e-99 365.9 386 56.0
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 9.1e-99 365.2 574 45.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 5.9e-98 362.5 552 46.2
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 7.7e-98 362.1 389 54.8
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 1.3e-97 361.3 382 56.5
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 5.0e-97 359.4 390 55.4
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 8.5e-97 358.6 392 55.1
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 4.2e-96 356.3 467 51.2
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 7.2e-96 355.5 551 46.6
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.7e-89 334.3 378 53.7
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 6.5e-89 332.4 372 53.5
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.5e-88 331.3 361 55.7
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 3.2e-88 330.1 354 55.6
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 5.5e-88 329.3 363 55.1
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.4e-83 314.7 543 43.5
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 6.5e-81 305.8 425 48.9
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.0e-70 270.4 141 96.5
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.3e-65 255.0 132 97.7
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.2e-51 207.2 108 99.1
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 9.2e-51 205.7 367 38.4
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.3e-49 201.1 251 45.0
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 6.8e-46 189.5 269 47.6
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 6.4e-44 183.0 455 33.2
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.9e-43 181.4 528 34.3
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 9.2e-43 179.1 341 39.6
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-39 168.7 195 50.8
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 4.1e-35 153.7 318 35.8
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 4.7e-31 140.2 205 43.4
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 2.0e-29 134.8 112 63.4
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 3.2e-27 127.5 199 43.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 3.2e-27 127.5 199 43.2
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 5.4e-27 126.7 103 61.2
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 5.4e-27 126.7 103 61.2
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.7e-26 124.4 265 34.7
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 8.7e-25 119.4 199 42.2
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 1.1e-24 119.0 171 51.5
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.2e-20 104.8 207 38.6
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.5e-16 91.3 146 46.6
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.3e-16 90.9 65 70.8
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 8.4e-12 76.3 250 31.2
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 7.9e-10 69.7 215 27.0
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 4.3e-08 63.9 207 25.1
A09p48230 Brassica napus HOM05D006053 ORTHO05D008381 2.8e-07 61.2 288 23.3
C08p30500 Brassica napus HOM05D006053 ORTHO05D008381 2.8e-07 61.2 289 23.9
BolC8t50669H Brassica oleracea HOM05D006053 ORTHO05D008381 2.8e-07 61.2 289 23.9
BraA09t40276Z Brassica rapa HOM05D006053 ORTHO05D008381 2.8e-07 61.2 288 23.3
Cpa.g.sc1.353 Carica papaya HOM05D006053 ORTHO05D008381 1.1e-06 59.3 169 29.6
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 1.4e-06 58.9 120 35.8
AL5G36480 Arabidopsis lyrata HOM05D006053 ORTHO05D008381 1.8e-06 58.5 144 29.2
Carub.0005s2199 Capsella rubella HOM05D006053 ORTHO05D008381 1.8e-06 58.5 238 23.9
THA.LOC104824082 Tarenaya hassleriana HOM05D006053 ORTHO05D008381 1.8e-06 58.5 339 23.6
Aa31LG10G10350 Aethionema arabicum HOM05D006053 ORTHO05D008381 2.4e-06 58.2 316 21.5
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 2.4e-06 58.2 89 36.0
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 2.4e-06 58.2 254 25.6
Zm00001eb266400 Zea mays HOM05D006053 ORTHO05D008381 2.4e-06 58.2 169 29.6
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 3.1e-06 57.8 214 24.3
CsaV3_7G000160 Cucumis sativus L. HOM05D004650 ORTHO05D005715 5.3e-06 57.0 89 36.0
SEGI_39288 Sequoiadendron giganteum HOM05D006053 ORTHO05D008381 5.3e-06 57.0 216 24.5
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 6.9e-06 56.6 215 26.0
AT3G55340 Arabidopsis thaliana HOM05D006053 ORTHO05D008381 6.9e-06 56.6 224 25.0
Ca_19429_v3 Cicer arietinum L. HOM05D000142 ORTHO05D001253 6.9e-06 56.6 190 28.9
Actinidia02973 Actinidia chinensis HOM05D006053 ORTHO05D008381 9.0e-06 56.2 133 31.6
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 9.0e-06 56.2 110 39.1
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 9.0e-06 56.2 265 23.8


User provided reference genes

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