Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005217 Camellia sinensis var. sinensis HOM05D058890 ORTHO05D110254 2.3e-111 405.6 205 100.0
CSS0016269 Camellia sinensis var. sinensis HOM05D058890 ORTHO05D003498 3.2e-57 225.7 206 66.5
Dinv38872 Davidia involucrata HOM05D002964 ORTHO05D003498 2.7e-24 116.3 159 48.4
Actinidia22709 Actinidia chinensis HOM05D002964 ORTHO05D003498 2.3e-15 86.7 161 37.9
TAR636G0864 Trochodendron aralioides HOM05D002964 ORTHO05D003498 1.3e-10 70.9 94 43.6
Nitab4.5_0007386g0010 Nicotiana tabacum HOM05D002964 ORTHO05D003498 1.1e-09 67.8 88 45.5
TAR375G0177 Trochodendron aralioides HOM05D002964 ORTHO05D003498 1.5e-09 67.4 93 43.0
Lalb_Chr17g0342241 Lupinus albus HOM05D002964 ORTHO05D003498 2.5e-09 66.6 110 39.1
Nitab4.5_0000305g0190 Nicotiana tabacum HOM05D002964 ORTHO05D003498 2.5e-09 66.6 88 45.5
Sopen01g039210 Solanum pennellii HOM05D002964 ORTHO05D003498 4.3e-09 65.9 134 35.8
QL02p015160 Quercus lobata HOM05D002964 ORTHO05D003498 7.3e-09 65.1 151 33.8
Solyc01g095460.3 Solanum lycopersicum HOM05D002964 ORTHO05D003498 7.3e-09 65.1 134 35.1
CSS0008805 Camellia sinensis var. sinensis HOM05D002964 ORTHO05D003498 9.5e-09 64.7 85 44.7
CAN.G986.51 Capsicum annuum HOM05D002964 ORTHO05D003498 9.5e-09 64.7 147 34.7
Glyma.16G029000 Glycine max HOM05D002964 ORTHO05D003498 2.1e-08 63.5 110 36.4
Actinidia28491 Actinidia chinensis HOM05D002964 ORTHO05D003498 2.8e-08 63.2 128 34.4
Lj8A212T67 Lonicera japonica HOM05D002964 ORTHO05D003498 2.8e-08 63.2 120 36.7
RcHm_v2.0_Chr1g0358601 Rosa chinensis HOM05D002964 ORTHO05D003498 2.8e-08 63.2 110 35.5
Ca_09488_v3 Cicer arietinum L. HOM05D002964 ORTHO05D003498 3.6e-08 62.8 88 43.2
Medtr8g028150 Medicago truncatula HOM05D002964 ORTHO05D003498 3.6e-08 62.8 105 37.1
Sabra14G0068800 Salix brachista HOM05D002964 ORTHO05D003498 3.6e-08 62.8 82 46.3
Phvul.010G108800 Phaseolus vulgaris HOM05D002964 ORTHO05D003498 4.7e-08 62.4 88 42.0
PGSC0003DMG400000088 Solanum tuberosum HOM05D002964 ORTHO05D003498 4.7e-08 62.4 88 42.0
FAN03G0643 Fragaria x ananassa HOM05D002964 ORTHO05D003498 6.1e-08 62.0 152 30.9
FAN06G1730 Fragaria x ananassa HOM05D002964 ORTHO05D003498 6.1e-08 62.0 152 30.9
FAN06G4642 Fragaria x ananassa HOM05D002964 ORTHO05D003498 6.1e-08 62.0 152 30.9
Hma1.2p1_0384F.1_g140960 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 6.1e-08 62.0 84 44.0
Actinidia02807 Actinidia chinensis HOM05D002964 ORTHO05D003498 8.0e-08 61.6 101 36.6
arahy.Tifrunner.gnm1.ann1.R6IGW9 Arachis hypogaea HOM05D002964 ORTHO05D003498 8.0e-08 61.6 91 40.7
CANSAT21G1582 Cannabis sativa HOM05D002964 ORTHO05D013268 8.0e-08 61.6 95 44.2
Nn1g01783 Nelumbo nucifera HOM05D002964 ORTHO05D003498 8.0e-08 61.6 160 33.1
Ah.05g179930 Amaranthus hybridus HOM05D002964 ORTHO05D003498 1.0e-07 61.2 98 40.8
MSTRG.17316 Avicennia marina HOM05D002964 ORTHO05D003498 1.4e-07 60.8 82 43.9
Dinv32548 Davidia involucrata HOM05D002964 ORTHO05D003498 1.4e-07 60.8 84 41.7
FvH4_7g15810 Fragaria vesca HOM05D002964 ORTHO05D003498 1.8e-07 60.5 152 30.3
Lj7C504T14 Lonicera japonica HOM05D002964 ORTHO05D003498 1.8e-07 60.5 110 36.4
THA.LOC104817330 Tarenaya hassleriana HOM05D002964 ORTHO05D003498 1.8e-07 60.5 88 40.9
VMungo0331G1027 Vigna mungo HOM05D002964 ORTHO05D003498 1.8e-07 60.5 88 40.9
arahy.Tifrunner.gnm1.ann1.CS824N Arachis hypogaea HOM05D002964 ORTHO05D003498 3.0e-07 59.7 144 31.9
ClCG05G001030 Citrullus lanatus HOM05D002964 ORTHO05D003498 3.0e-07 59.7 170 28.2
FAN01G2403 Fragaria x ananassa HOM05D002964 ORTHO05D003498 3.0e-07 59.7 110 34.5
Potri.014G094200 Populus trichocarpa HOM05D002964 ORTHO05D003498 3.0e-07 59.7 83 44.6
SalBow3G2159 Salvia bowleyana HOM05D002964 ORTHO05D003498 3.0e-07 59.7 101 36.6
Eucgr.E00078 Eucalyptus grandis HOM05D002964 ORTHO05D003498 5.2e-07 58.9 82 42.7
PGSC0003DMG400033876 Solanum tuberosum HOM05D002964 ORTHO05D003498 5.2e-07 58.9 88 42.0
Lalb_Chr10g0100161 Lupinus albus HOM05D002964 ORTHO05D003498 6.8e-07 58.5 82 43.9
Oeu022850.1 Olea europaea HOM05D002964 ORTHO05D003498 6.8e-07 58.5 79 40.5
Os05g0569300 Oryza sativa ssp. japonica HOM05D002964 ORTHO05D003498 8.9e-07 58.2 108 38.0
SGA_v2.0_scaffold24G10683 Striga asiatica HOM05D002964 ORTHO05D003498 8.9e-07 58.2 82 40.2
SGA_v2.0_scaffold5G02980 Striga asiatica HOM05D002964 ORTHO05D003498 8.9e-07 58.2 82 40.2
BcaB01g03232 Brassica carinata HOM05D002964 ORTHO05D003498 2.0e-06 57.0 88 39.8
Hma1.2p1_0077F.1_g039840 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 2.0e-06 57.0 95 38.9
Glyma.07G060400 Glycine max HOM05D002964 ORTHO05D003498 2.6e-06 56.6 105 36.2
Gorai.007G105100 Gossypium raimondii HOM05D002964 ORTHO05D003498 2.6e-06 56.6 100 38.0
Prupe.2G182800 Prunus persica HOM05D002964 ORTHO05D003498 2.6e-06 56.6 98 34.7
TWI23G0265 Tripterygium wilfordii HOM05D002964 ORTHO05D003498 2.6e-06 56.6 113 38.1
TAR629G0874 Trochodendron aralioides HOM05D002964 ORTHO05D003498 2.6e-06 56.6 93 40.9
vmacro22521 Vaccinium macrocarpon HOM05D002964 ORTHO05D003498 2.6e-06 56.6 94 38.3
CANSAT80G0627 Cannabis sativa HOM05D002964 ORTHO05D003498 3.4e-06 56.2 83 38.6
CiPaw.01G071000 Carya illinoinensis HOM05D002964 ORTHO05D003498 3.4e-06 56.2 82 40.2
MELO3C006054.2 Cucumis melo HOM05D002964 ORTHO05D003498 3.4e-06 56.2 150 28.7
Gohir.D11G098900 Gossypium hirsutum HOM05D002964 ORTHO05D003498 3.4e-06 56.2 100 38.0
Peaxi162Scf00403g00716 Petunia axillaris HOM05D002964 ORTHO05D003498 3.4e-06 56.2 79 41.8
Zm00001eb296340 Zea mays HOM05D002964 ORTHO05D003498 3.4e-06 56.2 75 48.0
MSTRG.20883 Avicennia marina HOM05D002964 ORTHO05D003498 4.4e-06 55.8 117 34.2
CARHR141540 Cardamine hirsuta HOM05D002964 ORTHO05D003498 4.4e-06 55.8 88 39.8
CsaV3_3G008360 Cucumis sativus L. HOM05D002964 ORTHO05D003498 4.4e-06 55.8 150 28.0
FAN04G0268 Fragaria x ananassa HOM05D002964 ORTHO05D013268 5.7e-06 55.5 146 33.6
HanXRQChr14g0443951 Helianthus annuus HOM05D002964 ORTHO05D003498 5.7e-06 55.5 92 38.0
unitig_60.g25629 Utricularia gibba HOM05D002964 ORTHO05D003498 5.7e-06 55.5 82 40.2
GSVIVG01027040001 Vitis vinifera HOM05D002964 ORTHO05D003498 5.7e-06 55.5 84 39.3
Aa31LG1G27660 Aethionema arabicum HOM05D002964 ORTHO05D003498 7.5e-06 55.1 89 38.2
Aa31LG5G840 Aethionema arabicum HOM05D002964 ORTHO05D003498 7.5e-06 55.1 137 29.9
Thhalv10001533m.g Eutrema salsugineum HOM05D002964 ORTHO05D003498 7.5e-06 55.1 88 38.6
Sp4g28320 Schrenkiella parvula HOM05D002964 ORTHO05D003498 7.5e-06 55.1 88 38.6
AL4G45550 Arabidopsis lyrata HOM05D002964 ORTHO05D003498 9.8e-06 54.7 88 38.6
Cc02_g38910 Coffea canephora HOM05D002964 ORTHO05D003498 9.8e-06 54.7 79 39.2
Gohir.A11G093900 Gossypium hirsutum HOM05D002964 ORTHO05D003498 9.8e-06 54.7 158 28.5
Hma1.2p1_0952F.1_g240830 Hydrangea macrophylla HOM05D002964 ORTHO05D003498 9.8e-06 54.7 73 45.2
MD14G1119500 Malus domestica HOM05D002964 ORTHO05D013268 9.8e-06 54.7 145 36.6
Manes.01G249900 Manihot esculenta HOM05D002964 ORTHO05D003498 9.8e-06 54.7 82 41.5
Mapoly0015s0005 Marchantia polymorpha HOM05D001459 ORTHO05D001359 9.8e-06 54.7 119 30.3
Zm00001eb129290 Zea mays HOM05D001459 ORTHO05D003498 9.8e-06 54.7 75 46.7


User provided reference genes

Program Settings