Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 2063.9 975 100.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1823.1 959 88.5
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1750.7 975 82.7
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1743.8 976 82.9
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1740.7 975 82.3
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1731.1 973 82.1
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1730.7 975 82.5
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1729.1 975 81.3
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1724.5 975 82.1
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1724.5 975 81.9
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1724.1 973 83.7
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1723.4 973 82.1
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1721.4 973 82.0
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1717.6 974 81.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1713.7 974 81.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1713.0 975 80.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1709.9 987 80.3
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1709.1 973 81.3
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1706.4 973 80.3
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1705.6 940 85.1
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1701.8 974 81.0
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1695.6 974 80.9
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1692.2 976 80.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1688.3 976 80.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1686.0 977 80.8
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1681.8 979 80.3
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1681.0 974 81.0
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1674.4 979 80.4
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 982 79.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1664.4 877 87.7
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1660.2 979 78.4
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1659.8 975 79.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1658.3 975 78.8
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1657.9 967 79.5
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1656.3 973 79.0
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1646.7 968 79.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1646.3 968 78.9
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1645.2 979 78.5
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1642.5 971 78.6
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1640.9 974 78.9
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1640.6 979 78.5
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1640.2 965 78.0
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1640.2 970 78.9
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1640.2 967 79.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1636.7 986 77.7
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1630.5 971 78.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1629.0 976 77.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1623.6 969 77.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1622.8 970 77.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1621.7 975 77.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1619.4 963 78.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1617.1 960 78.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 977 76.0
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 972 77.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 952 79.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1612.4 972 77.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1612.4 970 77.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1610.9 960 78.2
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1610.1 961 78.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1607.4 968 77.8
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1605.1 973 76.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1604.3 964 77.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1602.8 968 77.0
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 971 76.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1596.6 972 77.0
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 975 75.8
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1595.1 978 76.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1594.7 976 76.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1593.9 975 76.3
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1593.9 973 77.6
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 969 77.1
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 977 77.8
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1588.2 977 76.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1586.2 975 76.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 973 76.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 969 76.5
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1581.6 966 76.8
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1580.5 926 79.2
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1575.8 983 75.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1571.2 973 75.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 960 77.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1566.6 973 75.6
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 974 73.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 970 75.5
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1555.4 984 74.0
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 966 75.1
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1548.1 978 74.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 979 74.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1534.2 978 73.8
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1534.2 978 73.5
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 982 71.6
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 966 74.2
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1518.8 997 72.4
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1516.5 870 79.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 970 73.3
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 978 71.6
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1507.3 980 73.2
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 972 71.6
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1494.2 983 71.6
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 979 71.5
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 852 80.3
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1481.8 848 80.4
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 984 70.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1478.0 980 71.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 976 70.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1463.4 979 70.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1463.4 979 70.0
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1458.4 976 70.5
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1451.8 980 70.1
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1451.8 980 70.1
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1440.2 980 69.3
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 980 69.5
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 980 69.1
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 980 69.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1431.8 979 69.9
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 980 69.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1381.7 978 67.7
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1377.8 1003 64.7
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1358.6 979 66.7
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1347.0 761 80.9
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1329.7 980 66.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1315.8 767 79.3
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1315.1 979 65.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1285.4 788 76.4
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1263.1 849 69.6
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1262.3 787 75.6
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1242.3 787 74.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1087.0 979 55.5
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 8.6e-310 1067.0 686 72.4
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.0e-302 1043.5 961 53.8
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 4.3e-301 1038.1 706 71.7
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.7e-278 963.0 963 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.4e-274 948.7 961 51.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.6e-271 938.3 563 77.8
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.4e-267 926.0 979 48.4
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.6e-234 816.2 836 50.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.2e-217 760.0 403 84.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.6e-138 498.0 289 81.0
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-136 491.5 410 59.5
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 9.4e-123 445.7 373 61.7
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 4.4e-120 436.8 343 62.7
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 8.0e-106 389.4 216 83.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.3e-92 345.5 193 84.5
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.2e-88 332.4 202 73.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 9.8e-88 329.3 275 60.0
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.0e-76 291.2 159 83.0
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 5.6e-75 287.0 214 64.5
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.3e-68 265.0 155 76.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 5.1e-68 263.8 143 83.9
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.9e-63 248.1 765 28.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.7e-53 214.9 372 39.2
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 7.8e-53 213.4 147 65.3
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.2e-46 191.4 163 57.7
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 5.1e-44 184.1 96 85.4
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.8e-42 177.6 149 60.4
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 7.6e-40 170.2 791 24.7
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 6.0e-37 160.6 148 54.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.7e-36 157.1 93 81.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 2.1e-34 152.1 92 76.1
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 8.2e-34 150.2 119 58.8
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 9.3e-30 136.7 118 57.6
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-27 129.8 88 67.0
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 5.0e-23 114.4 135 44.4
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 4.2e-22 111.3 184 36.4
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.0e-20 106.7 121 47.1
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-17 96.3 379 26.4
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.4e-17 95.5 119 47.9
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.2e-13 83.2 71 57.7
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.1e-13 82.4 48 83.3
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.6e-11 75.5 46 69.6
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.4e-11 74.7 76 51.3
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.3e-07 63.2 78 44.9
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 8.5e-07 60.5 43 67.4


User provided reference genes

Program Settings