Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1999.2 997 100.0
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1932.9 1006 96.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1892.1 997 95.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1866.7 998 94.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1796.9 997 89.9
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1751.5 1037 85.4
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1730.7 997 86.3
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1728.0 993 87.3
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1728.0 997 85.7
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1726.5 997 86.3
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1718.0 997 86.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1711.4 997 84.9
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1704.5 998 84.9
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1704.1 997 84.5
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1701.0 994 85.2
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1697.9 997 84.6
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1696.8 993 84.8
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 997 84.3
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1686.8 997 83.8
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1686.0 997 84.0
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1686.0 997 83.9
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1685.2 997 84.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1684.5 997 83.9
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1682.2 997 83.1
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 998 83.8
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1679.1 998 83.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 997 83.7
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1677.1 997 83.4
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1671.0 1021 82.1
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1669.1 1021 81.9
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1662.9 998 82.6
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1660.6 1003 83.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1660.6 997 82.6
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 1015 82.6
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1657.9 1004 82.5
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1655.2 998 82.7
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 1021 81.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1650.6 999 82.7
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1650.2 997 82.1
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 997 82.3
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1645.9 1092 76.5
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1645.9 995 82.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1643.6 997 81.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1641.3 1000 81.7
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1639.8 997 81.3
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 999 81.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1636.7 998 81.9
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1634.8 997 81.5
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 1077 77.6
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1629.0 1013 80.6
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 997 81.1
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1622.4 994 80.3
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1621.3 998 80.3
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1620.5 994 80.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1619.4 998 80.1
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1618.6 995 80.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1618.2 999 80.2
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1617.8 997 82.0
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1617.1 994 80.9
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1614.7 1000 79.9
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 998 79.8
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1608.2 997 81.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 1001 79.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1603.2 998 79.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1603.2 1010 78.7
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1602.8 994 80.1
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 999 79.1
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1602.4 1000 79.5
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1594.3 998 79.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 997 80.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1590.1 998 80.6
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1587.8 1013 77.6
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1587.8 1003 78.7
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1584.3 1006 79.1
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1580.8 997 79.0
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1579.3 1013 77.5
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1577.8 997 79.1
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1576.2 940 83.3
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1570.4 1015 76.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1566.6 1029 78.0
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1564.7 945 82.9
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1558.1 997 77.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1558.1 995 78.1
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1535.8 1048 74.0
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1528.8 1025 75.9
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1519.6 1003 74.8
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1516.1 997 77.9
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1508.0 937 81.9
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1500.3 1003 79.9
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1491.1 997 75.6
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1458.0 904 79.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1436.0 1001 72.1
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1427.9 798 89.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1420.2 825 87.0
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1419.8 853 82.4
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1415.2 1003 71.4
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1383.6 770 90.6
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1347.4 793 84.5
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1333.9 960 70.7
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1318.5 864 77.5
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1317.8 780 84.7
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1310.8 802 83.2
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1272.7 800 79.5
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1258.8 771 82.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1175.2 790 76.8
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1171.8 1007 59.8
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1171.0 990 59.4
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1162.9 770 78.1
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 5.4e-299 1031.2 643 80.7
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.6e-298 1029.6 611 82.8
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 4.0e-294 1015.0 986 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.6e-285 985.7 798 62.3
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 2.9e-284 982.2 566 88.9
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 1.8e-283 979.5 673 74.7
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.7e-260 902.1 574 78.0
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 7.6e-253 877.9 519 82.7
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 2.3e-249 866.3 611 69.1
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.4e-238 830.5 525 80.8
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 1.3e-204 717.6 417 81.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 6.3e-175 619.0 336 89.6
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.3e-153 547.4 337 81.9
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.5e-133 480.3 290 82.8
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 9.3e-126 455.7 1081 30.8
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 4.2e-110 403.7 257 80.2
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 5.5e-110 403.3 230 81.7
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 2.4e-105 387.9 268 75.7
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 6.9e-105 386.3 231 78.8
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 9.3e-102 375.9 1041 27.4
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 8.7e-100 369.4 204 86.3
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 4.8e-98 363.6 1277 26.8
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.2e-95 354.8 212 83.5
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.6e-93 348.6 207 79.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 9.7e-91 339.3 231 71.0
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 5.2e-84 317.0 178 83.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.8e-81 308.5 198 75.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 2.6e-75 288.1 303 51.8
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.6e-69 268.9 153 81.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 4.7e-69 267.3 441 38.8
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 3.2e-62 244.6 153 77.8
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-58 232.6 127 82.7
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.0e-48 198.7 136 67.6
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.0e-47 194.1 174 67.8
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.6e-43 181.8 121 70.2
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.3e-42 179.5 163 58.9
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-39 169.5 111 75.7
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.9e-39 167.9 108 76.9
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.8e-36 159.1 94 80.9
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 9.2e-33 146.7 141 63.1
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-31 142.9 88 77.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.5e-30 139.4 145 58.6
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.3e-30 138.3 141 58.9
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.3e-30 137.1 72 94.4
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-29 136.3 98 69.4
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.4e-27 128.3 75 82.7
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-26 125.9 75 81.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-25 122.9 81 70.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.0e-23 116.7 92 65.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.7e-23 115.9 91 65.9
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.9e-18 98.6 87 54.0
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.9e-17 95.9 51 86.3
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.9e-17 95.9 54 83.3
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-15 89.0 117 40.2
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 2.1e-13 82.4 160 35.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-13 82.4 52 65.4
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.5e-11 76.3 232 23.7
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 3.0e-07 62.0 45 66.7
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.1e-06 60.1 31 83.9
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 5.6e-06 57.8 47 63.8


User provided reference genes

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