Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 5.3e-113 411.0 203 100.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.1e-105 385.2 202 95.5
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 3.9e-87 325.1 197 81.7
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.3e-79 299.3 200 75.0
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 5.8e-75 284.6 189 73.0
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.6e-72 276.6 200 68.5
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 3.5e-72 275.4 202 70.3
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 3.9e-71 271.9 200 69.5
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 5.6e-70 268.1 192 68.8
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 7.3e-70 267.7 192 69.8
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.2e-69 266.9 192 68.8
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.2e-69 266.9 183 72.7
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.6e-69 266.5 197 67.0
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 2.1e-69 266.2 200 68.5
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 3.6e-69 265.4 193 70.5
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.6e-69 265.4 192 68.8
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 3.6e-69 265.4 194 68.0
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 4.7e-69 265.0 200 68.0
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-68 263.8 193 69.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.8e-68 263.1 203 66.0
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.3e-68 262.7 202 67.3
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 3.1e-68 262.3 191 69.1
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.1e-68 262.3 192 67.7
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 4.0e-68 261.9 185 68.1
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 8.9e-68 260.8 200 66.0
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 8.9e-68 260.8 199 66.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.0e-67 259.6 188 66.5
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.6e-67 259.2 189 69.8
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 3.4e-67 258.8 197 64.0
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 5.8e-67 258.1 197 63.5
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 9.9e-67 257.3 194 67.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.3e-66 256.9 196 63.3
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.3e-66 256.9 188 67.0
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.7e-66 256.5 205 66.3
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.7e-66 256.5 205 66.3
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.2e-66 256.1 188 65.4
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.2e-66 256.1 186 66.7
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 3.7e-66 255.4 189 65.6
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 4.9e-66 255.0 192 63.5
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.9e-66 255.0 186 67.2
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 8.4e-66 254.2 204 65.7
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.4e-66 254.2 186 66.7
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.4e-66 254.2 186 66.7
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 8.4e-66 254.2 171 73.1
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.1e-65 253.8 192 66.1
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 2.4e-65 252.7 202 64.4
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 5.4e-65 251.5 189 65.1
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 9.2e-65 250.8 182 68.1
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.6e-64 250.0 202 63.9
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 2.7e-64 249.2 192 64.6
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 6.0e-64 248.1 197 61.4
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 6.0e-64 248.1 183 68.3
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 7.8e-64 247.7 200 60.5
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.3e-63 246.9 197 64.0
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 2.3e-63 246.1 195 60.5
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.0e-63 245.7 201 63.7
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 3.0e-63 245.7 190 62.6
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 3.9e-63 245.4 201 62.7
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 8.6e-63 244.2 192 60.9
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.9e-62 243.0 203 62.6
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 3.3e-62 242.3 196 63.3
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.3e-62 242.3 189 62.4
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.3e-62 242.3 185 64.3
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 5.6e-62 241.5 187 62.6
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 7.3e-62 241.1 189 62.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.2e-61 240.4 198 60.6
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.6e-61 240.0 195 62.6
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 3.6e-61 238.8 201 60.7
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 6.2e-61 238.0 185 67.0
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.4e-60 236.9 182 63.7
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 5.2e-60 235.0 189 61.4
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 7.6e-59 231.1 190 61.6
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 9.9e-59 230.7 190 62.6
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 9.9e-59 230.7 189 60.3
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 9.9e-59 230.7 189 60.3
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.9e-59 230.7 186 62.4
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.7e-58 229.9 189 61.4
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 6.4e-58 228.0 177 62.1
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.4e-58 227.6 186 62.4
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.1e-57 227.3 196 57.7
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.9e-57 226.5 189 60.3
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.4e-57 226.1 187 59.4
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 3.2e-57 225.7 197 62.4
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.2e-57 225.3 191 60.7
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.2e-57 225.3 191 60.7
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 4.2e-57 225.3 189 61.4
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.6e-56 223.4 192 60.9
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.1e-56 223.0 189 60.8
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.7e-56 222.6 189 60.3
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.5e-56 222.2 189 58.7
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.5e-56 222.2 189 58.7
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.5e-56 222.2 189 58.7
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.5e-56 222.2 189 58.7
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.5e-54 216.9 188 58.5
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 2.2e-50 203.0 188 58.0
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 8.4e-50 201.1 203 57.1
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.2e-48 197.2 186 54.8
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.8e-45 186.0 200 51.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 6.2e-45 184.9 159 60.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.1e-44 182.6 174 53.4
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 9.3e-41 171.0 130 64.6
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 7.9e-40 167.9 183 48.1
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 3.9e-39 165.6 196 46.9
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 8.7e-39 164.5 132 65.2
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.1e-38 164.1 185 46.5
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.5e-38 162.9 189 48.7
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 1.8e-36 156.8 176 48.9
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.1e-36 156.0 115 67.8
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 4.0e-36 155.6 190 43.2
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.9e-36 154.8 115 67.8
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.2e-35 154.1 181 47.5
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.1e-33 144.8 108 68.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 2.3e-31 139.8 120 60.0
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 5.3e-28 128.6 90 68.9
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 7.6e-27 124.8 106 59.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 2.3e-23 113.2 177 41.2
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 6.9e-20 101.7 251 32.3
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.9e-20 101.7 99 52.5
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.2e-19 100.9 85 55.3
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.2e-19 100.9 85 55.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.9e-18 96.3 171 40.4
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.0e-14 83.6 183 31.1
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 1.9e-09 67.0 125 32.0
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 7.9e-08 61.6 147 32.7
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 1.4e-07 60.8 116 41.4
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 2.3e-07 60.1 57 52.6
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.0e-07 59.7 39 69.2


User provided reference genes

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