Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.2e-96 355.5 170 100.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-74 282.0 194 76.8
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.1e-74 280.4 194 76.3
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.1e-74 280.4 194 76.3
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 7.2e-71 270.8 188 75.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.0e-69 266.9 194 72.7
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.8e-69 266.2 200 70.5
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 3.0e-69 265.4 188 73.4
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.0e-69 265.4 194 71.1
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 6.8e-69 264.2 194 72.2
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.5e-68 263.1 187 72.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.5e-68 263.1 187 73.3
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.0e-68 262.7 194 71.6
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 2.6e-68 262.3 191 72.8
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.6e-68 262.3 189 72.5
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.6e-68 262.3 187 72.2
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 3.4e-68 261.9 192 71.4
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-68 261.9 188 71.8
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 4.4e-68 261.5 187 72.7
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.4e-68 261.5 187 72.7
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 5.7e-68 261.2 187 72.7
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 7.5e-68 260.8 187 72.2
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 9.8e-68 260.4 186 72.6
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.3e-67 260.0 189 70.9
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.3e-67 260.0 189 71.4
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.3e-67 260.0 187 72.2
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.2e-67 259.2 188 70.7
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.2e-67 259.2 187 72.2
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.2e-67 259.2 187 71.7
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.8e-67 258.8 186 72.0
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 3.7e-67 258.5 187 72.2
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.7e-67 258.5 188 70.7
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 4.8e-67 258.1 187 72.7
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 6.3e-67 257.7 194 69.6
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 8.3e-67 257.3 187 72.7
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 8.3e-67 257.3 188 70.2
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 8.3e-67 257.3 188 70.2
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 8.3e-67 257.3 188 70.2
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 8.3e-67 257.3 187 71.1
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.4e-66 256.5 190 69.5
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.4e-66 256.5 190 69.5
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.8e-66 256.1 194 68.6
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.8e-66 256.1 189 71.4
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.4e-66 255.8 189 71.4
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.4e-66 255.8 187 70.6
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 7.0e-66 254.2 187 69.5
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.1e-66 253.8 189 71.4
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 9.1e-66 253.8 186 69.9
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 9.1e-66 253.8 187 70.6
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 9.1e-66 253.8 187 69.0
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.2e-65 253.4 187 69.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.2e-65 253.4 187 69.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.2e-65 253.4 187 70.1
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-65 253.4 187 70.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.2e-65 253.4 187 68.4
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.2e-65 253.4 187 69.0
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.6e-65 253.1 191 68.6
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 2.0e-65 252.7 187 69.0
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.0e-65 252.7 188 69.1
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 2.7e-65 252.3 188 69.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.7e-65 252.3 194 69.6
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 3.5e-65 251.9 187 68.4
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.5e-65 251.5 187 67.9
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 4.5e-65 251.5 187 69.5
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 4.5e-65 251.5 188 69.1
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 4.5e-65 251.5 187 69.0
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 4.5e-65 251.5 191 68.6
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 4.5e-65 251.5 188 68.1
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 69.0
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 69.0
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 69.0
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 69.0
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 69.0
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 69.0
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 5.9e-65 251.1 187 68.4
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 5.9e-65 251.1 194 68.6
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 5.9e-65 251.1 194 68.6
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 7.7e-65 250.8 194 68.6
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 7.7e-65 250.8 187 67.9
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.0e-64 250.4 194 68.6
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.3e-64 250.0 186 69.4
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.3e-64 250.0 184 69.6
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.3e-64 250.0 190 67.4
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.7e-64 249.6 184 69.6
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.7e-64 249.6 186 68.3
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.2e-64 249.2 188 66.5
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.2e-64 249.2 190 67.9
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.2e-64 249.2 188 67.6
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.2e-64 249.2 187 68.4
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 2.2e-64 249.2 186 69.9
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.9e-64 248.8 187 67.9
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.9e-64 248.8 188 67.0
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.9e-64 248.8 188 67.0
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.9e-64 248.8 188 67.0
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.9e-64 248.8 180 72.8
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 2.9e-64 248.8 187 67.9
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.9e-64 248.8 184 70.1
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.9e-64 248.8 187 67.9
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.9e-64 248.8 188 69.1
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.8e-64 248.4 207 63.3
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 3.8e-64 248.4 194 68.0
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 3.8e-64 248.4 194 66.5
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 5.0e-64 248.1 183 68.9
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 5.0e-64 248.1 186 68.8
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 6.5e-64 247.7 187 67.9
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 6.5e-64 247.7 187 67.9
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 6.5e-64 247.7 187 67.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 6.5e-64 247.7 186 68.8
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-63 246.9 187 68.4
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.1e-63 246.9 187 66.8
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.1e-63 246.9 187 67.4
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.1e-63 246.9 187 67.4
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.9e-63 246.1 186 67.7
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.9e-63 246.1 189 67.7
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.9e-63 246.1 186 68.3
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.9e-63 246.1 186 68.3
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.5e-63 245.7 187 66.8
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.5e-63 245.7 187 66.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 3.2e-63 245.4 187 66.8
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 4.2e-63 245.0 184 69.0
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.5e-63 244.6 186 68.3
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.5e-63 244.6 186 68.3
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 9.5e-63 243.8 187 66.8
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 9.5e-63 243.8 187 66.8
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 9.5e-63 243.8 187 66.8
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 9.5e-63 243.8 186 67.7
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.6e-62 243.0 187 65.8
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.7e-62 242.3 188 68.6
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 2.7e-62 242.3 188 66.0
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.7e-62 241.5 187 66.8
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 6.1e-62 241.1 188 65.4
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 6.1e-62 241.1 185 68.6
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 8.0e-62 240.7 187 65.8
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 8.0e-62 240.7 188 65.4
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 5.2e-61 238.0 183 67.2
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 8.8e-61 237.3 188 66.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 5.7e-60 234.6 186 65.6
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 5.7e-60 234.6 188 64.4
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 9.8e-60 233.8 182 65.9
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.7e-57 225.7 260 51.5
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 7.3e-55 217.6 183 63.4
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 9.5e-55 217.2 192 59.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.4e-53 213.4 162 71.0
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.4e-51 204.5 162 65.4
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 6.6e-48 194.5 153 66.0
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 7.5e-44 181.0 138 66.7
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 6.4e-43 177.9 137 67.9
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 3.2e-42 175.6 139 64.7
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 4.1e-42 175.3 143 66.4
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-41 172.2 138 63.8
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 5.0e-40 168.3 155 58.7
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.8e-37 159.8 131 64.1
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.7e-35 152.1 134 61.9
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 6.4e-35 151.4 189 43.4
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.1e-34 150.6 190 45.3
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.1e-34 147.9 146 58.2
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.1e-34 147.9 132 59.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-31 140.6 129 56.6
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-30 136.7 96 67.7
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-29 134.0 91 73.6
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.9e-28 127.5 96 64.6
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.9e-28 127.5 96 64.6
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.9e-28 127.5 91 68.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.8e-27 125.6 95 64.2
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.4e-27 124.8 74 75.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.1e-26 124.0 74 75.7
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.4e-26 122.9 74 75.7
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.1e-26 122.1 74 75.7
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.1e-25 119.8 150 48.7
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.7e-25 119.4 74 73.0
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.9e-23 113.2 74 73.0
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.8e-22 109.4 54 96.3
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.5e-20 103.6 69 75.4
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.3e-19 100.5 69 73.9
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 2.3e-16 89.7 45 88.9
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 7.3e-15 84.7 48 83.3
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 7.3e-15 84.7 42 97.6
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.4e-13 80.5 67 55.2
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.9e-13 78.2 49 69.4
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.9e-13 78.2 49 69.4
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.9e-13 78.2 49 69.4
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.9e-13 78.2 49 69.4
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.9e-13 78.2 49 69.4
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.9e-13 78.2 49 69.4


User provided reference genes

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