Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 0.0e+00 1377.8 712 100.0
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 0.0e+00 1372.5 712 99.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 3.1e-309 1064.7 728 76.2
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 5.7e-303 1043.9 730 75.1
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 7.5e-279 963.8 679 75.7
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 4.0e-264 914.8 723 67.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 9.9e-255 883.6 717 65.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.2e-252 876.7 732 63.4
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.0e-251 873.6 733 63.8
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 1.1e-245 853.6 738 61.8
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.2e-244 850.1 728 61.0
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.6e-244 848.2 730 62.3
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.0e-244 847.8 732 61.7
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.5e-242 842.4 730 61.5
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 7.3e-242 840.9 600 73.5
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.1e-240 837.0 730 61.6
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.4e-239 832.0 727 61.1
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 7.1e-237 824.3 818 59.5
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.1e-236 822.8 737 59.7
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 8.7e-235 817.4 710 60.7
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 4.3e-234 815.1 732 62.2
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 6.2e-233 811.2 727 60.9
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 2.4e-232 809.3 719 60.6
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 6.9e-232 807.7 712 61.0
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 4.5e-231 805.1 727 60.1
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 5.8e-231 804.7 723 59.6
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.8e-230 802.0 727 60.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.9e-229 799.7 724 60.8
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.2e-228 797.0 746 59.0
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.5e-228 795.4 738 59.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 4.6e-228 795.0 723 59.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 4.6e-228 795.0 712 60.7
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.0e-228 794.7 730 58.9
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.0e-227 793.9 719 59.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.8e-227 793.1 709 58.5
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.3e-227 792.7 731 59.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.1e-226 790.4 727 58.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.9e-226 789.6 714 59.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.3e-225 786.9 730 60.0
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.1e-225 784.3 726 58.3
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 3.1e-224 782.3 735 57.0
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 6.9e-224 781.2 711 60.5
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 5.8e-223 778.1 724 59.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.4e-222 774.2 751 57.0
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.4e-221 773.5 733 58.1
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.9e-220 767.7 751 56.3
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.0e-219 767.3 727 57.9
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.0e-219 767.3 703 59.2
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.3e-219 766.1 727 57.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 3.3e-218 762.3 751 56.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 7.4e-218 761.1 727 57.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.6e-217 760.0 730 57.1
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.1e-217 759.6 735 56.2
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.7e-217 758.8 709 57.7
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 3.1e-216 755.7 731 56.8
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.1e-216 755.7 730 57.7
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.0e-216 755.4 720 57.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 6.9e-216 754.6 709 56.3
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-214 750.4 731 56.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.8e-214 748.8 731 56.1
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.9e-214 748.4 723 56.8
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 8.4e-214 747.7 709 59.5
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.1e-212 743.0 713 55.1
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 6.0e-212 741.5 729 56.0
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.9e-211 738.8 716 57.1
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 6.7e-211 738.0 752 55.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 4.3e-210 735.3 752 55.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.8e-209 731.9 752 55.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 6.3e-209 731.5 770 53.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.0e-206 724.2 732 55.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.7e-206 723.4 728 55.2
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 2.2e-206 723.0 730 55.2
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.2e-204 717.2 729 54.9
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 5.1e-203 711.8 709 54.3
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 5.1e-203 711.8 710 53.8
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.9e-202 709.9 751 54.1
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 3.1e-200 702.6 673 56.6
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.9e-199 698.4 713 53.7
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.7e-198 696.8 739 53.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 3.8e-198 695.7 722 54.2
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.4e-197 693.7 645 59.4
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 9.4e-197 691.0 673 54.7
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 3.6e-196 689.1 729 52.7
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.0e-195 687.6 743 51.5
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.4e-195 687.2 637 60.0
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.5e-194 683.7 736 52.3
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 9.7e-194 681.0 733 52.1
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.8e-193 679.5 748 51.9
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 4.8e-193 678.7 756 51.7
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.1e-192 676.0 742 52.4
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.1e-192 676.0 744 52.0
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 4.1e-192 675.6 732 51.5
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.1e-192 675.6 742 51.3
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-191 674.1 733 51.6
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.0e-191 673.3 769 50.1
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 6.5e-190 668.3 731 51.3
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 1.4e-189 667.2 715 52.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 4.2e-189 665.6 731 52.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-188 664.1 731 50.9
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.1e-188 663.3 722 51.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 6.7e-187 658.3 656 55.8
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.3e-186 656.0 633 55.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 5.7e-186 655.2 628 57.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.8e-184 650.2 778 50.5
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-183 647.1 731 50.8
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 2.6e-183 646.4 731 50.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 8.0e-172 608.2 651 53.3
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.2e-170 604.4 708 49.3
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 9.8e-170 601.3 712 47.2
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 4.9e-161 572.4 531 59.7
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 5.9e-159 565.5 650 48.5
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.6e-154 550.1 773 44.4
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.9e-153 546.6 693 47.9
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 3.5e-143 513.1 662 45.9
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.1e-139 501.5 517 53.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.1e-136 488.8 711 42.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 3.3e-133 479.9 818 38.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.5e-125 454.5 764 40.6
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.9e-125 454.1 744 41.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.2e-120 436.8 761 38.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-97 361.7 863 32.9
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.7e-95 354.0 545 40.6
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.2e-89 334.3 518 39.0
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-80 305.4 484 39.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.0e-61 241.5 430 38.4
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 4.5e-58 230.3 653 28.9
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.0e-50 204.9 222 48.2
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.5e-48 198.0 228 49.1
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.4e-45 187.2 127 72.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 4.1e-43 180.6 293 40.3
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 9.2e-43 179.5 157 59.9
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.5e-42 177.6 216 49.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.1e-39 168.3 172 54.1
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.6e-37 161.4 95 75.8
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 3.4e-37 161.0 98 80.6
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.6e-32 143.7 95 70.5
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.2e-31 142.5 150 52.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 3.5e-26 124.4 143 46.9
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.6e-18 99.0 95 55.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 2.7e-18 98.2 251 37.5
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 9.6e-16 89.7 74 56.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.3e-09 69.3 414 25.8
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.9e-08 65.5 193 30.6
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.6e-07 62.4 41 75.6
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.6e-07 62.4 177 32.8
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 2.8e-07 61.6 80 45.0
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 6.2e-07 60.5 78 39.7
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 1.1e-06 59.7 162 29.6
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 1.1e-06 59.7 56 51.8
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 1.4e-06 59.3 74 37.8
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.4e-06 59.3 78 38.5
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 1.8e-06 58.9 80 40.0
THA.LOC104812616 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 1.8e-06 58.9 98 39.8
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 2.4e-06 58.5 81 39.5
Potri.007G135500 Populus trichocarpa HOM05D001439 ORTHO05D002726 2.4e-06 58.5 81 39.5
SGA_v2.0_scaffold22G09664 Striga asiatica HOM05D001439 ORTHO05D002726 2.4e-06 58.5 56 48.2
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 3.1e-06 58.2 160 28.8
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 4.0e-06 57.8 77 44.2
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 4.0e-06 57.8 56 48.2
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 4.0e-06 57.8 73 43.8
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 5.3e-06 57.4 149 32.2
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 6.9e-06 57.0 149 32.2
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 6.9e-06 57.0 79 41.8
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 6.9e-06 57.0 79 41.8
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 9.0e-06 56.6 79 43.0
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 9.0e-06 56.6 63 44.4
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 9.0e-06 56.6 63 41.3


User provided reference genes

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