Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.9e-86 320.5 148 100.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.7e-81 303.9 144 97.2
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.5e-80 302.0 144 96.5
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.2e-75 285.0 144 91.0
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 4.2e-75 284.6 144 91.7
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.6e-74 281.6 144 88.9
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 7.9e-74 280.4 144 88.9
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.8e-73 279.3 144 89.6
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.5e-72 276.2 144 87.5
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 3.7e-71 271.6 144 87.5
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 4.8e-71 271.2 144 87.5
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 8.2e-71 270.4 137 89.1
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.4e-70 269.6 144 87.5
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 3.1e-70 268.5 137 86.9
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 9.1e-70 266.9 144 82.6
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 9.1e-70 266.9 135 85.9
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-69 266.5 144 82.6
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.5e-69 266.2 144 81.9
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-69 266.2 144 82.6
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-69 266.2 144 82.6
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.5e-69 266.2 139 87.1
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.0e-69 265.8 144 83.3
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 3.4e-69 265.0 144 83.3
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.4e-69 265.0 144 84.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.5e-69 264.6 144 81.9
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.9e-69 264.2 144 81.9
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 5.9e-69 264.2 137 88.3
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 7.7e-69 263.8 144 83.3
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.0e-68 263.5 144 83.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.3e-68 263.1 144 84.0
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 2.2e-68 262.3 135 85.2
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.8e-68 261.5 144 79.9
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 1.1e-67 260.0 144 80.6
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.1e-67 260.0 144 81.2
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.4e-67 259.6 144 81.9
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.4e-67 259.6 144 79.2
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.4e-67 259.6 144 81.9
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.4e-67 259.6 144 83.3
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.4e-67 259.6 144 81.9
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.9e-67 259.2 148 79.7
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 2.5e-67 258.8 144 81.9
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.2e-66 256.5 144 78.5
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.2e-66 256.5 135 82.2
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.2e-66 256.5 135 82.2
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.2e-66 256.5 144 81.2
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.2e-66 256.5 144 77.8
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.2e-66 256.5 144 80.6
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.1e-66 255.8 144 80.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.7e-66 255.4 144 77.1
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 4.7e-66 254.6 144 78.5
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 4.7e-66 254.6 144 79.9
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 6.1e-66 254.2 144 79.2
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 6.1e-66 254.2 144 79.9
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 6.1e-66 254.2 135 82.2
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.0e-65 253.4 144 80.6
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.8e-65 252.7 138 81.2
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.8e-65 252.7 137 82.5
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.8e-65 252.7 144 81.2
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 2.3e-65 252.3 144 79.9
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 3.0e-65 251.9 135 80.7
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 8.8e-65 250.4 144 80.6
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.1e-64 250.0 139 79.9
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.1e-64 250.0 146 78.1
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 2.0e-64 249.2 139 79.9
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.0e-64 249.2 115 95.7
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.6e-64 248.8 144 79.2
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.4e-64 248.1 144 76.4
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 9.7e-64 246.9 139 76.3
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.3e-63 246.5 144 75.7
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.7e-63 246.1 140 79.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 2.2e-63 245.7 144 73.6
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.8e-63 245.4 139 76.3
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.8e-63 245.4 144 77.8
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 3.7e-63 245.0 144 76.4
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 4.8e-63 244.6 144 73.6
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.1e-62 243.4 160 69.4
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.1e-62 243.4 135 77.8
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.1e-62 243.4 135 77.8
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.1e-62 243.4 135 77.8
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.8e-62 242.7 144 77.8
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 9.1e-62 240.4 144 76.4
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.6e-61 239.6 142 76.8
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.6e-61 238.8 144 72.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 2.6e-61 238.8 144 72.9
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 5.9e-61 237.7 140 76.4
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 5.9e-61 237.7 148 75.7
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 7.7e-61 237.3 144 73.6
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.0e-60 236.9 144 74.3
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 2.2e-60 235.7 139 73.4
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 2.9e-60 235.3 135 76.3
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 3.8e-60 235.0 139 74.8
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 5.0e-60 234.6 139 74.8
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 6.5e-60 234.2 135 77.0
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 8.5e-60 233.8 137 74.5
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 1.5e-59 233.0 137 76.6
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 1.9e-59 232.6 140 74.3
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 1.9e-59 232.6 144 72.9
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 2.5e-59 232.3 138 73.2
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.2e-59 231.9 126 83.3
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 5.5e-59 231.1 137 73.0
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 7.2e-59 230.7 141 72.3
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 7.2e-59 230.7 159 69.2
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.6e-58 229.6 139 72.7
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 1.6e-58 229.6 140 72.1
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.6e-58 229.6 144 75.0
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.7e-58 228.8 139 71.9
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 2.7e-58 228.8 139 71.9
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.7e-58 228.8 139 71.9
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.7e-58 228.8 139 71.9
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.7e-58 228.8 137 73.0
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 3.6e-58 228.4 188 59.0
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 6.1e-58 227.6 115 85.2
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.8e-57 226.1 115 84.3
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 5.7e-56 221.1 144 70.8
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 5.9e-53 211.1 130 70.0
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 5.0e-52 208.0 133 68.4
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 4.7e-50 201.4 142 63.4
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.0e-49 198.7 91 94.5
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 3.4e-48 195.3 137 65.7
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.7e-47 193.0 95 86.3
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 6.1e-42 174.5 136 56.6
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 1.7e-39 166.4 95 75.8
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.4e-33 146.7 107 70.1
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.4e-30 134.8 63 87.3
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.4e-30 134.8 63 87.3
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.6e-27 124.8 73 83.6
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.6e-27 124.8 73 83.6
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 7.3e-27 124.4 78 71.8
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.6e-24 115.9 66 78.8
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.4e-22 110.2 144 41.0
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.2e-21 107.1 59 78.0
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.3e-20 103.6 63 63.5
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 3.9e-20 102.1 68 75.0
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 4.6e-13 78.6 145 34.5


User provided reference genes

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