Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 0.0e+00 1089.3 551 100.0
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 2.5e-250 868.6 577 77.1
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 2.2e-246 855.5 576 75.3
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 3.3e-226 788.5 576 70.0
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 6.3e-225 784.3 570 70.0
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.8e-224 782.7 570 69.1
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 2.4e-224 782.3 589 68.9
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.6e-223 778.9 578 67.3
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 9.4e-221 770.4 568 68.1
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.1e-220 769.2 578 67.8
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.1e-220 769.2 580 67.9
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 2.7e-220 768.8 539 70.3
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 2.7e-220 768.8 578 67.0
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.6e-220 768.5 579 67.4
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 6.1e-220 767.7 601 66.1
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.3e-219 765.8 540 69.8
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 3.0e-219 765.4 580 66.6
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 6.7e-219 764.2 577 66.9
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.2e-218 763.5 578 67.3
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 7.5e-218 760.8 580 66.6
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 2.8e-217 758.8 571 66.7
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 7.0e-216 754.2 574 66.0
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 9.1e-216 753.8 566 66.8
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 1.6e-215 753.1 540 68.9
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 4.5e-215 751.5 548 67.9
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 4.5e-215 751.5 575 66.3
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 5.0e-214 748.0 584 66.1
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 2.5e-213 745.7 573 66.3
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 3.2e-213 745.3 553 67.5
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.1e-212 742.7 539 66.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 2.1e-212 742.7 584 64.4
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 4.7e-212 741.5 563 64.8
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.4e-211 740.0 583 64.7
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 1.5e-210 736.5 571 65.1
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 7.5e-210 734.2 584 63.0
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 2.2e-209 732.6 578 64.4
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 2.7e-207 725.7 573 63.9
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 5.0e-206 721.5 574 63.8
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 2.5e-205 719.2 574 63.9
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 6.1e-204 714.5 574 62.0
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.0e-203 713.8 574 63.1
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.8e-203 713.0 571 62.9
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 8.8e-203 710.7 576 63.0
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 5.7e-202 708.0 581 61.8
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.7e-201 706.4 543 64.6
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 2.2e-201 706.1 580 62.6
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 8.3e-201 704.1 569 62.6
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 1.1e-200 703.7 572 61.9
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.8e-200 703.0 569 61.2
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 9.2e-200 700.7 463 75.2
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 1.6e-199 699.9 572 62.6
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 4.5e-199 698.4 572 62.6
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 1.7e-198 696.4 561 61.0
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 2.3e-198 696.0 572 62.2
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 6.6e-198 694.5 572 62.2
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.3e-197 691.8 590 61.0
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.1e-196 689.5 573 62.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 4.7e-196 688.3 572 61.5
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.3e-195 686.0 577 61.9
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 3.0e-195 685.6 543 62.8
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 3.4e-194 682.2 572 61.4
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 4.4e-194 681.8 579 61.7
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 2.2e-193 679.5 624 56.9
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 1.4e-192 676.8 514 65.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 2.7e-191 672.5 578 60.0
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 7.8e-191 671.0 569 59.6
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 5.6e-189 664.8 617 55.9
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 4.0e-187 658.7 579 59.8
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 1.4e-184 650.2 570 59.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 5.4e-184 648.3 542 64.8
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 6.6e-182 641.3 460 68.3
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.1e-181 640.6 570 56.0
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 1.2e-180 637.1 564 58.3
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 3.6e-180 635.6 561 56.3
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 5.2e-179 631.7 460 66.7
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 8.9e-179 630.9 457 67.4
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.4e-176 622.9 442 68.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 9.2e-176 620.9 463 68.9
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 6.0e-175 618.2 401 74.6
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.1e-171 607.4 536 55.6
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.8e-171 606.7 462 64.9
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.5e-170 603.6 431 66.8
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 2.4e-163 579.7 608 52.6
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.5e-157 559.7 511 57.5
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 6.9e-155 551.6 533 56.5
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 1.4e-152 543.9 464 61.6
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 4.6e-151 538.9 572 50.7
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 3.2e-144 516.2 569 48.2
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 5.1e-142 508.8 355 68.7
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 4.3e-141 505.8 581 47.5
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 2.7e-135 486.5 569 45.9
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 3.5e-135 486.1 351 69.2
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 1.1e-133 481.1 534 46.6
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.5e-128 463.4 395 58.7
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 1.1e-120 438.0 447 51.5
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.9e-120 437.2 296 68.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.1e-112 411.4 519 46.8
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.7e-110 402.1 338 56.8
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 8.0e-103 378.6 388 54.4
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 4.0e-102 376.3 268 72.0
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.3e-101 373.2 309 61.2
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 9.5e-88 328.6 201 76.6
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 8.9e-86 322.0 271 61.3
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 3.7e-84 316.6 539 39.3
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 7.0e-83 312.4 566 36.9
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.0e-73 280.4 435 38.4
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 6.2e-71 272.7 250 57.2
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.9e-68 263.8 201 68.2
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 7.0e-67 259.2 176 68.8
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 2.0e-61 241.1 141 80.9
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 5.8e-61 239.6 473 35.9
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 8.4e-52 209.1 517 30.0
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.5e-45 188.3 384 35.7
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.4e-43 181.0 530 27.0
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 2.9e-28 131.0 132 53.8
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 9.3e-27 125.9 124 55.6
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.0e-25 120.9 114 57.0
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.0e-22 109.4 82 63.4
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 7.9e-18 96.3 105 46.7
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 1.3e-17 95.5 74 60.8
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 8.7e-17 92.8 56 71.4
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 1.1e-16 92.4 54 74.1
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 4.8e-15 87.0 58 70.7
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.2e-13 82.4 496 24.2
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.1e-08 65.9 55 54.5
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 1.1e-08 65.9 35 85.7
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 1.1e-08 65.9 35 85.7
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 2.5e-08 64.7 35 80.0
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 7.4e-08 63.2 51 60.8
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.3e-07 62.4 46 65.2
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 6.3e-07 60.1 42 69.0
DCAR_031236 Daucus carota HOM05D006097 ORTHO05D020391 2.4e-06 58.2 41 61.0
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 9.1e-06 56.2 169 33.1


User provided reference genes

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