Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004728 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D033888 3.0e-44 181.4 88 100.0
CSS0006362 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D033888 3.8e-31 137.9 105 70.5
CSS0012718 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005816 9.0e-17 90.1 43 93.0
CSS0049644 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005816 9.0e-17 90.1 43 93.0
AL6G52730 Arabidopsis lyrata HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
AT4G00740 Arabidopsis thaliana HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
BcaC01g06860 Brassica carinata HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
C03p39050 Brassica napus HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
C09p00590 Brassica napus HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 88.4
BolC3t16177H Brassica oleracea HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
BolC9t52993H Brassica oleracea HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 88.4
BraA03t12375Z Brassica rapa HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
CSS0012757 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005816 1.5e-16 89.4 70 62.9
Carub.0006s3648 Capsella rubella HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Duzib133G0013 Durio zibethinus HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Duzib138G0082 Durio zibethinus HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Eucgr.E00210 Eucalyptus grandis HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Thhalv10028525m.g Eutrema salsugineum HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Gohir.A11G085700 Gossypium hirsutum HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Gohir.D11G089900 Gossypium hirsutum HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Gorai.007G095900 Gossypium raimondii HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
PGR042G0107 Punica granatum HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Sp6g00720 Schrenkiella parvula HOM05D000087 ORTHO05D005816 1.5e-16 89.4 43 90.7
Atru.BG.75.p Acer truncatum HOM05D000087 ORTHO05D005816 2.0e-16 89.0 69 63.8
Atru.chr5.419 Acer truncatum HOM05D000087 ORTHO05D005816 2.0e-16 89.0 69 63.8
Actinidia32929 Actinidia chinensis HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 88.4
Aa31LG8G4330 Aethionema arabicum HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 88.4
BcaC04g24150 Brassica carinata HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 88.4
A09p00330 Brassica napus HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 88.4
BraA09t35728Z Brassica rapa HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 88.4
Lsat_1_v5_gn_4_37041 Lactuca sativa HOM05D000087 ORTHO05D005816 2.0e-16 89.0 70 61.4
Oeu062013.1 Olea europaea HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 90.7
vmacro13331 Vaccinium macrocarpon HOM05D000087 ORTHO05D005816 2.0e-16 89.0 43 90.7
Aqoxy7G00407 Aquilegia oxysepala HOM05D000087 ORTHO05D005816 2.6e-16 88.6 43 86.0
arahy.Tifrunner.gnm1.ann1.26GYPH Arachis hypogaea HOM05D000087 ORTHO05D005816 2.6e-16 88.6 43 88.4
arahy.Tifrunner.gnm1.ann1.69QH8Z Arachis hypogaea HOM05D000087 ORTHO05D005816 2.6e-16 88.6 43 88.4
Cc02_g37370 Coffea canephora HOM05D000087 ORTHO05D005816 2.6e-16 88.6 43 88.4
Rhsim07G0020400 Rhododendron simsii HOM05D000087 ORTHO05D005816 2.6e-16 88.6 43 88.4
Cpa.g.sc18.217 Carica papaya HOM05D000087 ORTHO05D005816 3.4e-16 88.2 70 61.4
DCAR_006909 Daucus carota HOM05D000087 ORTHO05D005816 3.4e-16 88.2 43 88.4
Dinv32429 Davidia involucrata HOM05D000087 ORTHO05D005816 3.4e-16 88.2 43 88.4
Phvul.010G090400 Phaseolus vulgaris HOM05D000087 ORTHO05D005816 3.4e-16 88.2 43 88.4
Sed0014965 Sechium edule HOM05D000087 ORTHO05D005816 3.4e-16 88.2 43 88.4
Sc23g0003200 Simmondsia chinensis HOM05D000087 ORTHO05D005816 3.4e-16 88.2 43 88.4
THA.LOC104806188 Tarenaya hassleriana HOM05D000087 ORTHO05D005816 3.4e-16 88.2 43 88.4
A03p32030 Brassica napus HOM05D000087 ORTHO05D005816 4.5e-16 87.8 43 88.4
Ca_23744_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005816 4.5e-16 87.8 43 86.0
Ciclev10019404m.g Citrus clementina HOM05D000087 ORTHO05D005816 4.5e-16 87.8 70 61.4
COL.COLO4_12613 Corchorus olitorius HOM05D000087 ORTHO05D005816 4.5e-16 87.8 42 90.5
Dinv43766 Davidia involucrata HOM05D000087 ORTHO05D005816 5.9e-16 87.4 42 90.5
Migut.B01701 Erythranthe guttata HOM05D000087 ORTHO05D005816 5.9e-16 87.4 43 86.0
Gohir.D08G043800 Gossypium hirsutum HOM05D000087 ORTHO05D005816 5.9e-16 87.4 43 86.0
Gorai.004G042500 Gossypium raimondii HOM05D000087 ORTHO05D005816 5.9e-16 87.4 43 86.0
Lj3g0013922 Lotus japonicus HOM05D000087 ORTHO05D005816 5.9e-16 87.4 43 86.0
TWI14G1285 Tripterygium wilfordii HOM05D000087 ORTHO05D005816 5.9e-16 87.4 43 86.0
Nn6g34221 Nelumbo nucifera HOM05D000087 ORTHO05D005816 7.7e-16 87.0 43 83.7
MSTRG.20802 Avicennia marina HOM05D000087 ORTHO05D005816 1.0e-15 86.7 43 83.7
MELO3C006141.2 Cucumis melo HOM05D000087 ORTHO05D005816 1.0e-15 86.7 70 60.0
CsaV3_3G009210 Cucumis sativus L. HOM05D000087 ORTHO05D005816 1.0e-15 86.7 70 60.0
Glyma.07G077000 Glycine max HOM05D000087 ORTHO05D005816 1.0e-15 86.7 43 86.0
Lalb_Chr04g0256651 Lupinus albus HOM05D000087 ORTHO05D005816 1.0e-15 86.7 43 86.0
Phvul.008G072600 Phaseolus vulgaris HOM05D000087 ORTHO05D005816 1.0e-15 86.7 43 86.0
VMungo0331G0227 Vigna mungo HOM05D000087 ORTHO05D005816 1.0e-15 86.7 43 86.0
CARHR248910 Cardamine hirsuta HOM05D000087 ORTHO05D005816 1.3e-15 86.3 43 88.4
Glyma.18G225900 Glycine max HOM05D000087 ORTHO05D005816 1.3e-15 86.3 69 60.9
Lj7A518T105 Lonicera japonica HOM05D000087 ORTHO05D005816 1.3e-15 86.3 43 86.0
Thecc.01G366800 Theobroma cacao HOM05D000087 ORTHO05D005816 1.3e-15 86.3 43 88.4
TAR629G2403 Trochodendron aralioides HOM05D000087 ORTHO05D005816 1.3e-15 86.3 43 83.7
Ca_23739_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005816 1.7e-15 85.9 43 83.7
Glyma.09G265000 Glycine max HOM05D000087 ORTHO05D005816 1.7e-15 85.9 43 86.0
GSVIVG01027509001 Vitis vinifera HOM05D000087 ORTHO05D005816 1.7e-15 85.9 43 86.0
CiPaw.02G026200 Carya illinoinensis HOM05D000087 ORTHO05D005816 2.2e-15 85.5 70 58.6
MBI04_g00310_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005816 2.2e-15 85.5 43 86.0
Peaxi162Scf00021g00921 Petunia axillaris HOM05D000087 ORTHO05D005816 2.2e-15 85.5 43 83.7
Psat4g151920 Pisum sativum HOM05D000087 ORTHO05D005816 2.2e-15 85.5 43 81.4
Sed0002717 Sechium edule HOM05D000087 ORTHO05D005816 2.2e-15 85.5 43 86.0
arahy.Tifrunner.gnm1.ann1.36HCF2 Arachis hypogaea HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 86.0
arahy.Tifrunner.gnm1.ann1.LJ9V8V Arachis hypogaea HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 86.0
Cfa004198 Carpinus fangiana HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 86.0
Haze_15211 Corylus avellana HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 86.0
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 2.9e-15 85.1 70 60.0
Glyma.03G016700 Glycine max HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 83.7
HanXRQChr16g0523651 Helianthus annuus HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 86.0
TAR374G0449 Trochodendron aralioides HOM05D000087 ORTHO05D005816 2.9e-15 85.1 43 81.4
ClCG05G001820 Citrullus lanatus HOM05D000087 ORTHO05D005816 3.8e-15 84.7 43 83.7
Gohir.A08G033100 Gossypium hirsutum HOM05D000087 ORTHO05D005816 3.8e-15 84.7 43 83.7
Manes.01G261400 Manihot esculenta HOM05D000087 ORTHO05D005816 3.8e-15 84.7 43 86.0
Nitab4.5_0004973g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005816 3.8e-15 84.7 69 60.9
Nitab4.5_0005109g0030 Nicotiana tabacum HOM05D000087 ORTHO05D005816 3.8e-15 84.7 69 60.9
SalBow3G3525 Salvia bowleyana HOM05D000087 ORTHO05D005816 3.8e-15 84.7 43 81.4
PGSC0003DMG400027769 Solanum tuberosum HOM05D000087 ORTHO05D005816 3.8e-15 84.7 43 83.7
TPR.G17599 Trifolium pratense HOM05D000087 ORTHO05D005816 3.8e-15 84.7 43 79.1
EL10Ac1g00509 Beta vulgaris HOM05D000087 ORTHO05D005816 5.0e-15 84.3 43 86.0
Sabra14G0056400 Salix brachista HOM05D000087 ORTHO05D005816 5.0e-15 84.3 43 86.0
SGA_v2.0_scaffold153G37077 Striga asiatica HOM05D000087 ORTHO05D005816 5.0e-15 84.3 43 83.7
Ca_07857_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005816 6.5e-15 84.0 43 81.4
Hma1.2p1_0001F.1_g001820 Hydrangea macrophylla HOM05D000087 ORTHO05D005816 8.5e-15 83.6 43 83.7
MD01G1050300 Malus domestica HOM05D000087 ORTHO05D005816 8.5e-15 83.6 43 83.7
CANSAT56G2092 Cannabis sativa HOM05D000087 ORTHO05D005816 1.1e-14 83.2 43 83.7
CiPaw.01G055000 Carya illinoinensis HOM05D000087 ORTHO05D005816 1.1e-14 83.2 43 83.7
Solyc01g091640.3 Solanum lycopersicum HOM05D000087 ORTHO05D005816 1.1e-14 83.2 43 81.4
Sopen01g037410 Solanum pennellii HOM05D000087 ORTHO05D005816 1.1e-14 83.2 43 81.4
Potri.014G075300 Populus trichocarpa HOM05D000087 ORTHO05D005816 1.4e-14 82.8 43 83.7
Hund16956 Selenicereus undatus HOM05D000087 ORTHO05D005816 1.4e-14 82.8 43 81.4
AUR62004301 Chenopodium quinoa HOM05D000087 ORTHO05D005816 1.9e-14 82.4 43 81.4
AUR62022750 Chenopodium quinoa HOM05D000087 ORTHO05D005816 1.9e-14 82.4 43 81.4
Lalb_Chr17g0339981 Lupinus albus HOM05D000087 ORTHO05D005816 1.9e-14 82.4 43 81.4
Medtr8g432620 Medicago truncatula HOM05D000087 ORTHO05D005816 1.9e-14 82.4 43 79.1
CAN.G170.25 Capsicum annuum HOM05D000087 ORTHO05D005816 2.5e-14 82.0 70 55.7
Lj1g0003074 Lotus japonicus HOM05D000087 ORTHO05D005816 2.5e-14 82.0 43 79.1
MD07G1127700 Malus domestica HOM05D000087 ORTHO05D005816 2.5e-14 82.0 43 81.4
PSO782G3056 Papaver somniferum HOM05D000087 ORTHO05D005816 2.5e-14 82.0 43 81.4
Prupe.2G156800 Prunus persica HOM05D000087 ORTHO05D005816 2.5e-14 82.0 43 81.4
Lalb_Chr10g0097441 Lupinus albus HOM05D000087 ORTHO05D005816 3.2e-14 81.6 43 81.4
Psat3g113720 Pisum sativum HOM05D000087 ORTHO05D005816 3.2e-14 81.6 42 78.6
unitig_26.g9729 Utricularia gibba HOM05D000087 ORTHO05D005816 3.2e-14 81.6 43 76.7
VMungo1383G0441 Vigna mungo HOM05D000087 ORTHO05D005816 3.2e-14 81.6 42 83.3
Gohir.D08G150900 Gossypium hirsutum HOM05D000087 ORTHO05D005816 4.2e-14 81.3 43 76.7
FvH4_7g13340 Fragaria vesca HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
FAN01G3003 Fragaria x ananassa HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
FAN03G1269 Fragaria x ananassa HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
FAN06G1530 Fragaria x ananassa HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
FAN06G2965 Fragaria x ananassa HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
FAN10G2094 Fragaria x ananassa HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
FAN10G2481 Fragaria x ananassa HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
Medtr7g076150 Medicago truncatula HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
RcHm_v2.0_Chr1g0352661 Rosa chinensis HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
TPR.G37797 Trifolium pratense HOM05D000087 ORTHO05D005816 5.5e-14 80.9 43 79.1
Ah.05g176150 Amaranthus hybridus HOM05D000087 ORTHO05D005816 7.2e-14 80.5 43 81.4
Eucgr.D02247 Eucalyptus grandis HOM05D000087 ORTHO05D005816 7.2e-14 80.5 43 79.1
QL08p050251 Quercus lobata HOM05D000087 ORTHO05D005816 7.2e-14 80.5 70 57.1
Gorai.004G156600 Gossypium raimondii HOM05D000087 ORTHO05D005816 9.4e-14 80.1 43 76.7
Oeu058610.1 Olea europaea HOM05D000087 ORTHO05D005816 9.4e-14 80.1 43 76.7
PSO063G1365 Papaver somniferum HOM05D000087 ORTHO05D005816 1.2e-13 79.7 41 82.9
Hund27316 Selenicereus undatus HOM05D000087 ORTHO05D005816 1.2e-13 79.7 43 76.7
ATR0757G209 Amborella trichopoda HOM05D000087 ORTHO05D005816 2.1e-13 79.0 42 76.2
MBI12_g15162_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005816 4.6e-13 77.8 40 80.0
CDE11G0250 Ceratophyllum demersum HOM05D000087 ORTHO05D005816 1.0e-12 76.6 41 78.0
CDE12G0174 Ceratophyllum demersum HOM05D000087 ORTHO05D005816 3.0e-12 75.1 43 76.7
Lsat_1_v5_gn_7_5621 Lactuca sativa HOM05D000087 ORTHO05D005816 6.7e-12 73.9 43 72.1
Os04g0569400 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005816 6.7e-12 73.9 44 68.2
HanXRQChr04g0121901 Helianthus annuus HOM05D000087 ORTHO05D005816 8.8e-12 73.6 43 74.4
SEGI_11501 Sequoiadendron giganteum HOM05D000087 ORTHO05D005816 1.5e-11 72.8 41 70.7
ECA236G2942 Erigeron canadensis HOM05D000087 ORTHO05D005816 2.5e-11 72.0 42 73.8
CDE04G0571 Ceratophyllum demersum HOM05D000087 ORTHO05D003116 5.7e-11 70.9 43 74.4
HPP92_025953 Vanilla planifolia HOM05D000087 ORTHO05D005816 7.4e-11 70.5 43 67.4
Zm00001eb073670 Zea mays HOM05D000087 ORTHO05D005816 2.8e-10 68.6 43 62.8
Actinidia38297 Actinidia chinensis HOM05D000087 ORTHO05D005816 5.3e-09 64.3 36 83.3
SMO367G1231 Selaginella moellendorffii HOM05D000087 ORTHO05D005816 3.8e-07 58.2 38 57.9
CBR_g41788 Chara braunii HOM05D000087 ORTHO05D000439 1.9e-06 55.8 58 41.4
Nn3g19187 Nelumbo nucifera HOM05D000087 ORTHO05D033888 1.9e-06 55.8 26 84.6
CAN.G769.3 Capsicum annuum HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 60.5
FvH4_7g13290 Fragaria vesca HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 55.8
FAN01G0587 Fragaria x ananassa HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 55.8
FAN03G0187 Fragaria x ananassa HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 55.8
FAN06G4166 Fragaria x ananassa HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 55.8
FAN06G5099 Fragaria x ananassa HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 55.8
FAN10G3465 Fragaria x ananassa HOM05D000087 ORTHO05D000439 3.2e-06 55.1 43 55.8
PGR031G2012 Punica granatum HOM05D000087 ORTHO05D005816 3.2e-06 55.1 28 71.4
QL08p050427 Quercus lobata HOM05D000087 ORTHO05D000439 3.2e-06 55.1 48 54.2
Lj8C27T9 Lonicera japonica HOM05D000087 ORTHO05D000439 5.5e-06 54.3 34 64.7
CBR_g31239 Chara braunii HOM05D000087 ORTHO05D000439 7.2e-06 53.9 51 43.1
FAN10G2828 Fragaria x ananassa HOM05D000087 ORTHO05D000439 7.2e-06 53.9 39 59.0
Nitab4.5_0000080g0010 Nicotiana tabacum HOM05D000087 ORTHO05D000439 7.2e-06 53.9 35 62.9
Nitab4.5_0001559g0010 Nicotiana tabacum HOM05D000087 ORTHO05D000439 7.2e-06 53.9 34 64.7
Nitab4.5_0008543g0010 Nicotiana tabacum HOM05D000087 ORTHO05D000439 7.2e-06 53.9 35 62.9
Peaxi162Scf00915g00124 Petunia axillaris HOM05D000087 ORTHO05D000439 7.2e-06 53.9 34 64.7
arahy.Tifrunner.gnm1.ann1.0TI0EP Arachis hypogaea HOM05D000087 ORTHO05D000439 9.4e-06 53.5 38 60.5
arahy.Tifrunner.gnm1.ann1.KI3BEB Arachis hypogaea HOM05D000087 ORTHO05D000439 9.4e-06 53.5 38 60.5
Nitab4.5_0002107g0060 Nicotiana tabacum HOM05D000087 ORTHO05D000439 9.4e-06 53.5 34 64.7
Solyc03g026120.3 Solanum lycopersicum HOM05D000087 ORTHO05D000439 9.4e-06 53.5 34 64.7
Sopen03g004960 Solanum pennellii HOM05D000087 ORTHO05D000439 9.4e-06 53.5 34 64.7
PGSC0003DMG400014275 Solanum tuberosum HOM05D000087 ORTHO05D000439 9.4e-06 53.5 34 64.7
TWI59G0274 Tripterygium wilfordii HOM05D000087 ORTHO05D000439 9.4e-06 53.5 43 58.1
HPP92_007365 Vanilla planifolia HOM05D000087 ORTHO05D000439 9.4e-06 53.5 35 60.0


User provided reference genes

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