Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 8.1e-40 166.8 94 100.0
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 7.2e-12 73.9 35 100.0
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 7.2e-12 73.9 35 100.0
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 2.7e-11 72.0 35 97.1
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 2.7e-11 72.0 34 100.0
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 7.9e-11 70.5 35 94.3
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 1.4e-10 69.7 41 80.5
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.4e-10 69.7 33 97.0
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.8e-10 69.3 35 94.3
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.8e-10 69.3 35 94.3
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 2.3e-10 68.9 32 100.0
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 2.3e-10 68.9 32 100.0
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.3e-10 68.9 32 100.0
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 2.3e-10 68.9 32 100.0
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 2.3e-10 68.9 32 100.0
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 3.0e-10 68.6 42 76.2
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 3.0e-10 68.6 34 94.1
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 3.9e-10 68.2 32 96.9
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 3.9e-10 68.2 32 96.9
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 3.9e-10 68.2 34 91.2
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 3.9e-10 68.2 35 91.4
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-10 68.2 41 78.0
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 5.1e-10 67.8 35 91.4
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 5.1e-10 67.8 33 93.9
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 5.1e-10 67.8 32 96.9
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 6.7e-10 67.4 32 93.8
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 6.7e-10 67.4 32 96.9
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 8.8e-10 67.0 31 100.0
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 8.8e-10 67.0 32 93.8
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 8.8e-10 67.0 32 93.8
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 8.8e-10 67.0 32 93.8
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 8.8e-10 67.0 31 100.0
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 8.8e-10 67.0 32 93.8
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 8.8e-10 67.0 37 83.8
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 8.8e-10 67.0 31 100.0
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 8.8e-10 67.0 31 100.0
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 1.1e-09 66.6 32 96.9
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.5e-09 66.2 32 93.8
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 1.5e-09 66.2 32 93.8
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 1.5e-09 66.2 32 93.8
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 1.5e-09 66.2 32 93.8
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 2.5e-09 65.5 32 93.8
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 93.8
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 93.8
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 93.8
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 93.8
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 90.6
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 93.8
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 4.3e-09 64.7 32 93.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.3e-09 64.7 31 96.8
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 4.3e-09 64.7 34 88.2
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 5.7e-09 64.3 32 90.6
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 5.7e-09 64.3 32 90.6
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 7.4e-09 63.9 32 93.8
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 7.4e-09 63.9 32 93.8
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 7.4e-09 63.9 32 93.8
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.4e-09 63.9 32 93.8
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.4e-09 63.9 32 93.8
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.3e-08 63.2 32 90.6
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 1.3e-08 63.2 31 90.3
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.7e-08 62.8 32 90.6
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.7e-08 62.8 32 90.6
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 1.7e-08 62.8 32 90.6
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 1.7e-08 62.8 32 90.6
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 2.2e-08 62.4 32 87.5
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 3.7e-08 61.6 49 61.2
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 6.3e-08 60.8 32 87.5
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 8.2e-08 60.5 44 70.5
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 1.1e-07 60.1 32 87.5
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 1.2e-06 56.6 31 80.6


User provided reference genes

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