Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2642.1 1330 100.0
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2622.4 1330 99.2
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2301.9 1330 86.9
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2253.0 1334 84.8
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2043.1 1336 77.2
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1991.9 1337 75.0
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1986.5 1327 76.0
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1961.8 1338 74.0
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1953.3 1339 74.2
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1952.9 1336 73.3
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1950.6 1364 72.1
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1918.7 1337 72.7
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1917.1 1485 67.0
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1899.4 1335 71.6
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1897.9 1339 72.1
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1897.5 1336 71.9
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1885.9 1337 70.8
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1884.4 1337 71.4
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1884.4 1334 71.4
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1884.0 1337 71.2
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1880.1 1336 72.3
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1871.3 1329 72.1
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1870.1 1326 70.7
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1842.8 1331 70.2
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1833.2 1341 69.7
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1826.6 1331 69.7
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1823.5 1331 69.6
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1823.1 1331 69.5
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1822.8 1341 70.0
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1820.8 1400 68.3
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1814.3 1344 68.2
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1813.5 1335 69.2
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1798.9 1243 73.0
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1796.2 1334 68.4
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1788.9 1339 68.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1787.3 1319 68.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1785.8 1340 67.7
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1765.4 1337 66.9
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1764.6 1310 68.9
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1761.1 1336 67.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1756.9 1339 67.4
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1756.5 1336 67.1
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1754.2 1385 65.2
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1751.1 1340 67.2
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1745.7 1340 67.1
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1742.2 1339 66.4
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1737.2 1341 66.4
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1731.8 1332 66.1
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1730.7 1336 66.4
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1720.7 1345 65.7
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1718.0 1348 65.5
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1706.0 1288 67.2
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1696.4 1304 65.6
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1682.2 1333 64.1
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1674.8 1444 61.8
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1660.2 1334 63.3
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1657.1 1317 64.2
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1640.2 1339 63.9
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1637.1 1330 63.8
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1630.5 1317 63.5
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1629.4 995 82.4
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1626.7 1345 62.3
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1624.8 1355 62.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1622.1 1367 62.7
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1615.5 1307 62.7
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1612.4 1346 62.6
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1608.2 1332 61.7
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1605.5 1293 62.5
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1593.2 1332 62.2
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1592.8 1293 61.9
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1590.1 1400 60.4
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1587.8 1328 61.4
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1583.9 1294 61.7
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1580.8 1335 61.6
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1579.7 1347 61.1
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1573.5 1352 60.8
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1573.5 1352 61.0
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1571.2 1348 61.4
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1568.1 1327 61.6
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1562.0 1249 64.2
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1553.9 1320 61.0
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1553.1 1451 57.3
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1551.6 1353 59.6
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1547.7 1335 59.9
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1543.1 1336 59.8
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1540.0 1328 60.3
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1538.5 1349 60.3
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1533.5 1328 60.2
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1525.4 1329 60.9
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1517.3 1325 59.5
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1515.4 1327 61.6
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1515.4 1327 61.6
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1506.5 1345 58.6
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1503.8 1345 58.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1498.4 1298 59.9
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1495.7 1292 59.8
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1470.7 1296 60.6
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1429.8 1325 56.9
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1321.6 891 75.5
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1276.9 1338 51.9
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1171.4 817 73.7
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1078.9 978 59.9
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 4.4e-272 942.2 1295 44.6
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 2.2e-268 929.9 1421 39.8
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 1.2e-250 870.9 1333 40.0
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 7.0e-246 855.1 1268 39.7
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 1.0e-241 841.3 1292 40.9
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 3.4e-240 836.3 575 73.9
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 4.9e-239 832.4 1409 37.3
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.4e-238 830.9 466 90.6
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 4.6e-221 772.7 1172 42.1
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 7.8e-205 718.8 1374 35.1
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.2e-198 696.4 461 75.9
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 3.9e-188 663.3 542 63.3
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 1.8e-185 654.4 470 69.8
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 8.2e-178 629.0 477 65.6
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.6e-173 614.8 1469 31.2
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.1e-161 575.5 357 81.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.1e-157 561.2 496 59.1
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.0e-151 540.0 667 46.0
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 9.7e-147 525.8 441 61.7
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 5.3e-145 520.0 573 49.7
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.4e-137 494.6 567 46.6
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.7e-136 491.1 545 49.9
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 5.6e-102 377.1 286 67.8
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 6.9e-92 343.6 265 63.0
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 2.3e-87 328.6 459 43.1
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 1.9e-81 308.9 384 47.1
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 9.0e-68 263.5 225 58.7
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 5.0e-50 204.5 175 56.6
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 1.8e-47 196.1 347 39.2
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.5e-43 183.0 135 62.2
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.2e-42 179.1 228 42.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 3.6e-40 171.8 164 53.0
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.3e-39 169.1 147 61.9
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 9.7e-38 163.7 163 52.1
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 9.1e-36 157.1 164 48.8
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.1e-33 150.2 910 22.2
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.5e-33 149.8 119 63.9
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.2e-33 148.3 106 68.9
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 2.3e-31 142.5 115 64.3
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 2.0e-30 139.4 367 32.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.8e-28 132.9 94 71.3
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 3.1e-28 132.1 137 55.5
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 1.6e-27 129.8 230 38.7
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.0e-26 127.1 85 72.9
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.2e-25 122.1 412 26.0
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.2e-24 120.2 144 52.1
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.8e-15 89.7 141 43.3
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.0e-15 88.6 139 40.3
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 5.2e-15 88.2 161 38.5
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 1.2e-14 87.0 56 73.2
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.6e-11 76.6 73 53.4
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 1.0e-10 73.9 70 52.9
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.5e-09 69.3 97 42.3
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 1.2e-08 67.0 59 57.6
Psat1g112240 Pisum sativum HOM05D004392 ORTHO05D029174 6.8e-07 61.2 62 51.6


User provided reference genes

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