Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004534 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D109277 5.3e-56 220.7 106 100.0
CSS0045366 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D112620 5.9e-55 217.2 106 98.1
TWI59G1092 Tripterygium wilfordii HOM05D000943 ORTHO05D010024 5.6e-13 77.8 43 86.0
Cc02_g23100 Coffea canephora HOM05D000943 ORTHO05D010024 9.5e-13 77.0 67 59.7
Rhsim04G0110500 Rhododendron simsii HOM05D000943 ORTHO05D010024 4.7e-12 74.7 42 83.3
CSS0044087 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D010024 6.2e-12 74.3 42 85.7
Duzib132G0520 Durio zibethinus HOM05D000943 ORTHO05D010024 6.2e-12 74.3 42 83.3
Thecc.02G019300 Theobroma cacao HOM05D000943 ORTHO05D010024 6.2e-12 74.3 42 83.3
Nn8g40352 Nelumbo nucifera HOM05D000943 ORTHO05D010024 8.1e-12 73.9 42 83.3
GSVIVG01023255001 Vitis vinifera HOM05D000943 ORTHO05D010024 1.1e-11 73.6 51 72.5
SalBow3G1699 Salvia bowleyana HOM05D000943 ORTHO05D010024 1.4e-11 73.2 75 49.3
TAR628G1147 Trochodendron aralioides HOM05D000943 ORTHO05D010024 1.4e-11 73.2 42 83.3
Atru.chr6.800 Acer truncatum HOM05D000943 ORTHO05D010024 1.8e-11 72.8 42 83.3
Nitab4.5_0002550g0030 Nicotiana tabacum HOM05D000943 ORTHO05D010024 1.8e-11 72.8 67 56.7
Potri.003G008700 Populus trichocarpa HOM05D000943 ORTHO05D010024 1.8e-11 72.8 42 81.0
CiPaw.05G005300 Carya illinoinensis HOM05D000943 ORTHO05D010024 2.3e-11 72.4 42 81.0
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 2.3e-11 72.4 42 81.0
CDE06G2531 Ceratophyllum demersum HOM05D000943 ORTHO05D024933 3.1e-11 72.0 42 83.3
Nitab4.5_0000667g0060 Nicotiana tabacum HOM05D000943 ORTHO05D010024 3.1e-11 72.0 67 55.2
Gohir.D04G176600 Gossypium hirsutum HOM05D000943 ORTHO05D010024 6.8e-11 70.9 42 81.0
Hma1.2p1_2174F.1_g316050 Hydrangea macrophylla HOM05D000943 ORTHO05D010024 6.8e-11 70.9 42 81.0
Gohir.A04G133500 Gossypium hirsutum HOM05D000943 ORTHO05D010024 8.9e-11 70.5 42 78.6
Gorai.012G169500 Gossypium raimondii HOM05D000943 ORTHO05D010024 8.9e-11 70.5 42 78.6
Manes.10G118900 Manihot esculenta HOM05D000943 ORTHO05D010024 8.9e-11 70.5 42 78.6
Peaxi162Scf00011g01123 Petunia axillaris HOM05D000943 ORTHO05D010024 8.9e-11 70.5 67 58.2
vmacro19866 Vaccinium macrocarpon HOM05D000943 ORTHO05D010024 8.9e-11 70.5 67 56.7
CAN.G2125.2 Capsicum annuum HOM05D000943 ORTHO05D010024 1.2e-10 70.1 51 66.7
Actinidia01604 Actinidia chinensis HOM05D000943 ORTHO05D010024 1.5e-10 69.7 42 81.0
Peaxi162Scf02228g00005 Petunia axillaris HOM05D000943 ORTHO05D010024 1.5e-10 69.7 42 76.2
CAN.G284.3 Capsicum annuum HOM05D000943 ORTHO05D010024 2.0e-10 69.3 42 78.6
Ciclev10001198m.g Citrus clementina HOM05D000943 ORTHO05D010024 2.0e-10 69.3 42 78.6
ATR0584G051 Amborella trichopoda HOM05D000943 ORTHO05D010024 2.6e-10 68.9 42 73.8
EL10Ac4g08445 Beta vulgaris HOM05D000943 ORTHO05D010024 2.6e-10 68.9 42 81.0
SGA_v2.0_scaffold42G15906 Striga asiatica HOM05D000943 ORTHO05D010024 2.6e-10 68.9 67 55.2
Lsat_1_v5_gn_9_120381 Lactuca sativa HOM05D000943 ORTHO05D010024 3.4e-10 68.6 75 50.7
Zm00001eb139050 Zea mays HOM05D000943 ORTHO05D010024 4.4e-10 68.2 42 76.2
Sabra03G0004300 Salix brachista HOM05D000943 ORTHO05D010024 5.8e-10 67.8 42 73.8
Cpa.g.sc113.50 Carica papaya HOM05D000943 ORTHO05D010024 7.6e-10 67.4 42 76.2
Lj5A262G66 Lonicera japonica HOM05D000943 ORTHO05D010024 7.6e-10 67.4 67 56.7
Os12g0170300 Oryza sativa ssp. japonica HOM05D000943 ORTHO05D010024 7.6e-10 67.4 56 62.5
Manes.07G023600 Manihot esculenta HOM05D000943 ORTHO05D010024 1.3e-09 66.6 42 73.8
Prupe.1G578600 Prunus persica HOM05D000943 ORTHO05D010024 1.7e-09 66.2 73 49.3
PGR142G1561 Punica granatum HOM05D000943 ORTHO05D010024 1.7e-09 66.2 42 76.2
Sc07g0005160 Simmondsia chinensis HOM05D000943 ORTHO05D010024 1.7e-09 66.2 35 85.7
unitig_22.g6855 Utricularia gibba HOM05D000943 ORTHO05D010024 1.7e-09 66.2 61 55.7
MBI09_g28076_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D010024 2.2e-09 65.9 42 76.2
Haze_10048 Corylus avellana HOM05D000943 ORTHO05D010024 2.9e-09 65.5 42 76.2
Hund15466 Selenicereus undatus HOM05D000943 ORTHO05D010024 2.9e-09 65.5 42 78.6
Cfa004493 Carpinus fangiana HOM05D000943 ORTHO05D010024 3.8e-09 65.1 42 76.2
DCAR_006674 Daucus carota HOM05D000943 ORTHO05D010024 3.8e-09 65.1 42 71.4
Nitab4.5_0000787g0260 Nicotiana tabacum HOM05D000943 ORTHO05D010024 3.8e-09 65.1 51 64.7
Oeu064607.2 Olea europaea HOM05D000943 ORTHO05D010024 6.4e-09 64.3 42 76.2
QL02p100337 Quercus lobata HOM05D000943 ORTHO05D010024 6.4e-09 64.3 42 73.8
Ah.02g128290 Amaranthus hybridus HOM05D000943 ORTHO05D010024 1.4e-08 63.2 42 71.4
Migut.N00828 Erythranthe guttata HOM05D000943 ORTHO05D010024 1.4e-08 63.2 67 50.7
HanXRQChr01g0027191 Helianthus annuus HOM05D000943 ORTHO05D010024 1.9e-08 62.8 67 52.2
MELO3C016503.2 Cucumis melo HOM05D000943 ORTHO05D010024 3.2e-08 62.0 42 71.4
Nitab4.5_0007295g0040 Nicotiana tabacum HOM05D000943 ORTHO05D010024 4.1e-08 61.6 51 62.7
HPP92_011385 Vanilla planifolia HOM05D000943 ORTHO05D010024 5.4e-08 61.2 42 69.0
Mapoly0050s0070 Marchantia polymorpha HOM05D000943 ORTHO05D008314 1.2e-07 60.1 44 56.8
CsaV3_3G006370 Cucumis sativus L. HOM05D000943 ORTHO05D010024 3.5e-07 58.5 42 71.4
Sed0011001 Sechium edule HOM05D000943 ORTHO05D010024 3.5e-07 58.5 42 66.7
ClCG10G007030 Citrullus lanatus HOM05D000943 ORTHO05D010024 4.6e-07 58.2 42 66.7
ClCG10G007050 Citrullus lanatus HOM05D000943 ORTHO05D010024 6.0e-07 57.8 42 66.7
Aa31LG4G2400 Aethionema arabicum HOM05D000943 ORTHO05D008314 7.8e-07 57.4 44 54.5
Ah.04g163940 Amaranthus hybridus HOM05D000943 ORTHO05D008314 1.0e-06 57.0 44 54.5
CARHR072050 Cardamine hirsuta HOM05D000943 ORTHO05D008314 1.0e-06 57.0 44 52.3
Pp3c7_7830 Physcomitrium patens HOM05D000943 ORTHO05D010024 1.0e-06 57.0 42 54.8
arahy.Tifrunner.gnm1.ann1.A1RUKD Arachis hypogaea HOM05D000943 ORTHO05D008314 1.3e-06 56.6 44 54.5
arahy.Tifrunner.gnm1.ann1.AVJ0IE Arachis hypogaea HOM05D000943 ORTHO05D008314 1.3e-06 56.6 44 54.5
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 1.3e-06 56.6 44 52.3
Lalb_Chr01g0016271 Lupinus albus HOM05D000943 ORTHO05D008314 1.3e-06 56.6 44 52.3
PSO675G4586 Papaver somniferum HOM05D000943 ORTHO05D008314 1.3e-06 56.6 44 54.5
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 1.3e-06 56.6 44 52.3
PGR031G3430 Punica granatum HOM05D000943 ORTHO05D008314 1.7e-06 56.2 44 54.5
THA.LOC104812302 Tarenaya hassleriana HOM05D000943 ORTHO05D008314 1.7e-06 56.2 44 54.5
VMungo1080G0956 Vigna mungo HOM05D000943 ORTHO05D008314 1.7e-06 56.2 43 55.8
Aa31LG4G2410 Aethionema arabicum HOM05D000943 ORTHO05D008314 2.3e-06 55.8 44 52.3
ATR0763G119 Amborella trichopoda HOM05D000943 ORTHO05D008314 2.3e-06 55.8 44 59.1
AagrBONN_evm.TU.Sc2ySwM_368.1065 Anthoceros agrestis HOM05D004447 ORTHO05D005973 2.3e-06 55.8 42 61.9
Cpa.g.sc682.5 Carica papaya HOM05D000943 ORTHO05D008314 2.3e-06 55.8 44 52.3
Lj3g0014038 Lotus japonicus HOM05D000943 ORTHO05D008314 2.3e-06 55.8 44 52.3
Potri.011G103200 Populus trichocarpa HOM05D000943 ORTHO05D008314 2.3e-06 55.8 44 52.3
Sopen01g045990 Solanum pennellii HOM05D000943 ORTHO05D010024 2.3e-06 55.8 31 77.4
Carub.0002s2541 Capsella rubella HOM05D000943 ORTHO05D008314 3.0e-06 55.5 44 50.0
Ciclev10020318m.g Citrus clementina HOM05D000943 ORTHO05D008314 3.0e-06 55.5 44 52.3
Lj1A822T51 Lonicera japonica HOM05D000943 ORTHO05D008314 3.0e-06 55.5 44 54.5
MBI02_g32395_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D008314 3.0e-06 55.5 44 54.5
MBI02_g32396_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D008314 3.0e-06 55.5 44 54.5
Manes.03G078100 Manihot esculenta HOM05D000943 ORTHO05D008314 3.0e-06 55.5 44 52.3
Solyc01g103620.4 Solanum lycopersicum HOM05D000943 ORTHO05D010024 3.0e-06 55.5 31 74.2
CsaV3_3G006360 Cucumis sativus L. HOM05D000943 ORTHO05D010024 3.9e-06 55.1 43 60.5
Glyma.13G264300 Glycine max HOM05D000943 ORTHO05D008314 3.9e-06 55.1 44 52.3
MD11G1271200 Malus domestica HOM05D000943 ORTHO05D008314 3.9e-06 55.1 44 52.3
Sc16g0007780 Simmondsia chinensis HOM05D000943 ORTHO05D008314 3.9e-06 55.1 44 52.3
EL10Ac4g08437 Beta vulgaris HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
AUR62013941 Chenopodium quinoa HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
AUR62019668 Chenopodium quinoa HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
MELO3C025675.2 Cucumis melo HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
CsaV3_4G032780 Cucumis sativus L. HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
Nitab4.5_0000092g0190 Nicotiana tabacum HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 52.3
Nitab4.5_0001386g0010 Nicotiana tabacum HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 52.3
Prupe.4G155400 Prunus persica HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 52.3
Thecc.07G135000 Theobroma cacao HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 5.1e-06 54.7 44 50.0
Gohir.A01G046900 Gossypium hirsutum HOM05D000943 ORTHO05D008314 6.6e-06 54.3 44 50.0
Gohir.D01G037600 Gossypium hirsutum HOM05D000943 ORTHO05D008314 6.6e-06 54.3 44 50.0
Gorai.002G045800 Gossypium raimondii HOM05D000943 ORTHO05D008314 6.6e-06 54.3 44 50.0
SMO230G0059 Selaginella moellendorffii HOM05D000943 ORTHO05D010024 6.6e-06 54.3 42 59.5
HPP92_018428 Vanilla planifolia HOM05D000943 ORTHO05D008314 6.6e-06 54.3 44 52.3
AL2G38960 Arabidopsis lyrata HOM05D000943 ORTHO05D008314 8.6e-06 53.9 44 50.0
arahy.Tifrunner.gnm1.ann1.BUF90N Arachis hypogaea HOM05D000943 ORTHO05D008314 8.6e-06 53.9 44 50.0
arahy.Tifrunner.gnm1.ann1.WT9QCD Arachis hypogaea HOM05D000943 ORTHO05D008314 8.6e-06 53.9 44 50.0
COL.COLO4_03605 Corchorus olitorius HOM05D000943 ORTHO05D008314 8.6e-06 53.9 44 50.0
MELO3C016505.2 Cucumis melo HOM05D000943 ORTHO05D010024 8.6e-06 53.9 43 58.1
Peaxi162Scf00000g76016 Petunia axillaris HOM05D000943 ORTHO05D008314 8.6e-06 53.9 44 52.3


User provided reference genes

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