Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004527 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D043319 9.5e-95 350.1 173 100.0
CSS0050166 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D043319 5.6e-63 244.6 160 79.4
Actinidia26156 Actinidia chinensis HOM05D002874 ORTHO05D003250 8.3e-14 81.3 99 47.5
Rhsim05G0106200 Rhododendron simsii HOM05D002874 ORTHO05D003250 1.2e-12 77.4 143 39.2
Dinv24303 Davidia involucrata HOM05D002874 ORTHO05D003250 2.2e-11 73.2 147 36.1
vmacro19881 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 1.1e-10 70.9 143 36.4
Actinidia06462 Actinidia chinensis HOM05D002874 ORTHO05D003250 5.5e-10 68.6 130 36.9
COL.COLO4_11715 Corchorus olitorius HOM05D002874 ORTHO05D003250 1.2e-09 67.4 48 62.5
Gorai.013G041100 Gossypium raimondii HOM05D002874 ORTHO05D003250 3.6e-09 65.9 48 58.3
Thecc.02G096400 Theobroma cacao HOM05D002874 ORTHO05D003250 3.6e-09 65.9 48 56.2
Gohir.A13G038000 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.7e-09 65.5 48 58.3
Gohir.D13G036400 Gossypium hirsutum HOM05D002874 ORTHO05D003250 4.7e-09 65.5 48 58.3
BcaNung02905 Brassica carinata HOM05D002874 ORTHO05D003250 6.1e-09 65.1 54 50.0
C07p60060 Brassica napus HOM05D002874 ORTHO05D003250 6.1e-09 65.1 54 50.0
BraA03t15313Z Brassica rapa HOM05D002874 ORTHO05D003250 6.1e-09 65.1 34 67.6
THA.LOC104807351 Tarenaya hassleriana HOM05D002874 ORTHO05D003250 6.1e-09 65.1 34 70.6
vmacro05120 Vaccinium macrocarpon HOM05D002874 ORTHO05D003250 6.1e-09 65.1 92 38.0
CARHR242040 Cardamine hirsuta HOM05D002874 ORTHO05D003250 1.8e-08 63.5 77 45.5
A03p62460 Brassica napus HOM05D002874 ORTHO05D003250 2.3e-08 63.2 33 66.7
Gohir.D01G006200 Gossypium hirsutum HOM05D002874 ORTHO05D003250 2.3e-08 63.2 45 57.8
Gorai.002G007200 Gossypium raimondii HOM05D002874 ORTHO05D003250 2.3e-08 63.2 45 57.8
Sp7g31670 Schrenkiella parvula HOM05D002874 ORTHO05D003250 4.0e-08 62.4 43 60.5
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 5.2e-08 62.0 48 56.2
Gohir.A01G006100 Gossypium hirsutum HOM05D002874 ORTHO05D003250 5.2e-08 62.0 45 57.8
PGSC0003DMG400023801 Solanum tuberosum HOM05D002874 ORTHO05D003250 8.8e-08 61.2 34 67.6
BcaNung04335 Brassica carinata HOM05D002874 ORTHO05D003250 1.2e-07 60.8 43 53.5
Thhalv10026077m.g Eutrema salsugineum HOM05D002874 ORTHO05D003250 1.2e-07 60.8 69 43.5
TWI75G1683 Tripterygium wilfordii HOM05D002874 ORTHO05D003250 1.2e-07 60.8 73 42.5
Nitab4.5_0001744g0040 Nicotiana tabacum HOM05D002874 ORTHO05D003250 1.5e-07 60.5 46 54.3
Cpa.g.sc62.42 Carica papaya HOM05D002874 ORTHO05D003250 2.0e-07 60.1 48 47.9
Peaxi162Scf00011g00065 Petunia axillaris HOM05D002874 ORTHO05D003250 2.6e-07 59.7 39 59.0
Solyc01g103970.4 Solanum lycopersicum HOM05D002874 ORTHO05D003250 2.6e-07 59.7 45 57.8
Carub.0007s0648 Capsella rubella HOM05D002874 ORTHO05D003250 4.4e-07 58.9 59 44.1
Ciclev10029827m.g Citrus clementina HOM05D002874 ORTHO05D003250 5.7e-07 58.5 76 38.2
C01p04850 Brassica napus HOM05D002874 ORTHO05D003250 9.8e-07 57.8 43 48.8
BolC1t00469H Brassica oleracea HOM05D002874 ORTHO05D003250 1.3e-06 57.4 43 48.8
Atru.chr5.2783 Acer truncatum HOM05D002874 ORTHO05D003250 1.7e-06 57.0 47 46.8
Atru.chr5.2798 Acer truncatum HOM05D002874 ORTHO05D003250 1.7e-06 57.0 47 46.8
A01p04460 Brassica napus HOM05D002874 ORTHO05D003250 1.7e-06 57.0 33 57.6
BraA01t00433Z Brassica rapa HOM05D002874 ORTHO05D003250 1.7e-06 57.0 33 57.6
DCAR_006694 Daucus carota HOM05D002874 ORTHO05D003250 2.2e-06 56.6 47 51.1
Ah.05g178590 Amaranthus hybridus HOM05D002874 ORTHO05D003250 2.8e-06 56.2 32 65.6
AL7G17480 Arabidopsis lyrata HOM05D002874 ORTHO05D003250 2.8e-06 56.2 64 43.8
Eucgr.I01172 Eucalyptus grandis HOM05D002874 ORTHO05D003250 2.8e-06 56.2 54 42.6
Manes.15G142950 Manihot esculenta HOM05D002874 ORTHO05D003250 2.8e-06 56.2 29 69.0
CSS0000541 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 3.7e-06 55.8 95 35.8
CSS0036415 Camellia sinensis var. sinensis HOM05D002874 ORTHO05D003250 3.7e-06 55.8 95 35.8
AT4G33940 Arabidopsis thaliana HOM05D002874 ORTHO05D003250 4.9e-06 55.5 94 33.0
Cc02_g22760 Coffea canephora HOM05D002874 ORTHO05D003250 4.9e-06 55.5 32 62.5
Rhsim07G0166200 Rhododendron simsii HOM05D002874 ORTHO05D003250 4.9e-06 55.5 29 69.0
Nitab4.5_0008061g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 6.3e-06 55.1 44 50.0
Pp3c4_27320 Physcomitrium patens HOM05D002874 ORTHO05D003250 6.3e-06 55.1 51 41.2
Potri.004G143900 Populus trichocarpa HOM05D002874 ORTHO05D003250 6.3e-06 55.1 33 60.6
Rhsim07G0166100 Rhododendron simsii HOM05D002874 ORTHO05D003250 6.3e-06 55.1 31 61.3
Sabra04G0095400 Salix brachista HOM05D002874 ORTHO05D003250 6.3e-06 55.1 32 62.5
Actinidia39025 Actinidia chinensis HOM05D002874 ORTHO05D003250 8.3e-06 54.7 87 34.5
Nitab4.5_0007966g0010 Nicotiana tabacum HOM05D002874 ORTHO05D003250 8.3e-06 54.7 42 52.4


User provided reference genes

Program Settings