Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004491 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D024740 3.0e-57 224.9 112 100.0
Actinidia16519 Actinidia chinensis HOM05D000084 ORTHO05D000639 3.2e-35 151.8 97 81.4
GSVIVG01022366001 Vitis vinifera HOM05D000084 ORTHO05D000639 3.2e-35 151.8 98 86.7
Dinv30328 Davidia involucrata HOM05D000084 ORTHO05D000639 3.9e-33 144.8 107 74.8
Dinv08214 Davidia involucrata HOM05D000084 ORTHO05D000639 5.1e-33 144.4 107 74.8
MSTRG.23481 Avicennia marina HOM05D000084 ORTHO05D000639 1.4e-30 136.3 112 66.1
Peaxi162Scf00699g00417 Petunia axillaris HOM05D000084 ORTHO05D024740 2.4e-30 135.6 98 75.5
Sopen12g013310 Solanum pennellii HOM05D000084 ORTHO05D000639 2.4e-30 135.6 98 75.5
Nitab4.5_0000420g0140 Nicotiana tabacum HOM05D000084 ORTHO05D000639 4.5e-29 131.3 100 73.0
Cc07_g19430 Coffea canephora HOM05D000084 ORTHO05D000639 2.9e-28 128.6 97 76.3
SGA_v2.0_scaffold211G42170 Striga asiatica HOM05D000084 ORTHO05D000639 5.0e-28 127.9 97 74.2
Rhsim08G0001400 Rhododendron simsii HOM05D000084 ORTHO05D000639 6.5e-28 127.5 98 74.5
Nitab4.5_0003946g0010 Nicotiana tabacum HOM05D000084 ORTHO05D000639 9.4e-27 123.6 100 71.0
Hund21793 Selenicereus undatus HOM05D000084 ORTHO05D000639 9.4e-27 123.6 97 71.1
Haze_25348 Corylus avellana HOM05D000084 ORTHO05D000639 1.6e-26 122.9 100 73.0
DCAR_022245 Daucus carota HOM05D000084 ORTHO05D000639 2.1e-26 122.5 97 71.1
Solyc12g027850.3 Solanum lycopersicum HOM05D000084 ORTHO05D024740 4.7e-26 121.3 84 76.2
CAN.G34.14 Capsicum annuum HOM05D000084 ORTHO05D024740 6.1e-26 120.9 101 69.3
Ciclev10019965m.g Citrus clementina HOM05D000084 ORTHO05D000639 1.8e-25 119.4 92 70.7
Migut.H00834 Erythranthe guttata HOM05D000084 ORTHO05D000639 1.8e-25 119.4 98 65.3
EL10Ac4g09669 Beta vulgaris HOM05D000084 ORTHO05D000639 2.3e-25 119.0 94 70.2
TAR376G0720 Trochodendron aralioides HOM05D000084 ORTHO05D000639 3.0e-25 118.6 99 71.7
CiPaw.04G077500 Carya illinoinensis HOM05D000084 ORTHO05D000639 5.2e-25 117.9 107 67.3
MD15G1137900 Malus domestica HOM05D000084 ORTHO05D000639 5.2e-25 117.9 97 72.2
Prupe.4G280700 Prunus persica HOM05D000084 ORTHO05D000639 5.2e-25 117.9 98 73.5
FvH4_1g25340 Fragaria vesca HOM05D000084 ORTHO05D000639 8.8e-25 117.1 97 69.1
FAN23G1911 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.8e-25 117.1 97 69.1
FAN26G0094 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.8e-25 117.1 97 69.1
FAN28G2683 Fragaria x ananassa HOM05D000084 ORTHO05D000639 8.8e-25 117.1 97 69.1
MD00G1110700 Malus domestica HOM05D000084 ORTHO05D000639 8.8e-25 117.1 98 70.4
QL06p045312 Quercus lobata HOM05D000084 ORTHO05D000639 1.1e-24 116.7 96 69.8
TWI60G0915 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 1.1e-24 116.7 97 69.1
Atru.chr9.1943 Acer truncatum HOM05D000084 ORTHO05D000639 2.0e-24 115.9 99 67.7
Oeu038346.1 Olea europaea HOM05D000084 ORTHO05D000639 2.0e-24 115.9 98 66.3
Sed0023536 Sechium edule HOM05D000084 ORTHO05D000639 2.6e-24 115.5 103 64.1
Sed0026349 Sechium edule HOM05D000084 ORTHO05D000639 4.4e-24 114.8 94 71.3
AUR62000549 Chenopodium quinoa HOM05D000084 ORTHO05D000639 7.4e-24 114.0 90 68.9
FAN19G1604 Fragaria x ananassa HOM05D000084 ORTHO05D000639 7.4e-24 114.0 97 68.0
Thecc.03G302600 Theobroma cacao HOM05D000084 ORTHO05D000639 7.4e-24 114.0 111 64.0
TWI60G1144 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 9.7e-24 113.6 98 66.3
RcHm_v2.0_Chr2g0123381 Rosa chinensis HOM05D000084 ORTHO05D000639 1.3e-23 113.2 97 68.0
MELO3C009014.2 Cucumis melo HOM05D000084 ORTHO05D000639 1.7e-23 112.8 106 65.1
Duzib084G0398 Durio zibethinus HOM05D000084 ORTHO05D000639 1.7e-23 112.8 98 67.3
CANSAT01G0286 Cannabis sativa HOM05D000084 ORTHO05D000639 2.2e-23 112.5 98 69.4
Aqoxy6G00240 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 3.7e-23 111.7 98 68.4
CsaV3_4G031270 Cucumis sativus L. HOM05D000084 ORTHO05D000639 8.2e-23 110.5 106 64.2
Gorai.006G206400 Gossypium raimondii HOM05D000084 ORTHO05D000639 8.2e-23 110.5 97 66.0
Duzib205G1637 Durio zibethinus HOM05D000084 ORTHO05D000639 1.4e-22 109.8 98 66.3
Gohir.A09G189200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.4e-22 109.8 97 66.0
Gohir.D09G184000 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.8e-22 109.4 97 64.9
Eucgr.H05079 Eucalyptus grandis HOM05D000084 ORTHO05D000639 2.4e-22 109.0 106 61.3
Potri.003G142900 Populus trichocarpa HOM05D000084 ORTHO05D000639 3.1e-22 108.6 96 68.8
Ca_17000_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 5.3e-22 107.8 97 66.0
Ca_17027_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 5.3e-22 107.8 97 66.0
TPR.G7861 Trifolium pratense HOM05D000084 ORTHO05D000639 7.0e-22 107.5 97 66.0
Manes.09G052700 Manihot esculenta HOM05D000084 ORTHO05D000639 9.1e-22 107.1 97 70.1
Potri.001G088000 Populus trichocarpa HOM05D000084 ORTHO05D000639 1.6e-21 106.3 96 68.8
Medtr3g096960 Medicago truncatula HOM05D000084 ORTHO05D000639 3.5e-21 105.1 97 63.9
Gohir.D13G011900 Gossypium hirsutum HOM05D000084 ORTHO05D000639 4.5e-21 104.8 99 63.6
Gorai.013G013100 Gossypium raimondii HOM05D000084 ORTHO05D000639 4.5e-21 104.8 99 63.6
Sabra01G0064400 Salix brachista HOM05D000084 ORTHO05D000639 4.5e-21 104.8 96 66.7
ATR0665G647 Amborella trichopoda HOM05D000084 ORTHO05D000639 5.9e-21 104.4 99 65.7
Lalb_Chr08g0238011 Lupinus albus HOM05D000084 ORTHO05D000639 1.0e-20 103.6 97 69.1
ECA233G5645 Erigeron canadensis HOM05D000084 ORTHO05D000639 1.3e-20 103.2 95 63.2
PSO528G0033 Papaver somniferum HOM05D000084 ORTHO05D000639 1.3e-20 103.2 98 63.3
PGR102G2481 Punica granatum HOM05D000084 ORTHO05D000639 1.3e-20 103.2 97 67.0
Glyma.04G207900 Glycine max HOM05D000084 ORTHO05D000639 1.7e-20 102.8 97 67.0
vmacro18678 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 2.9e-20 102.1 75 73.3
PSO170G4148 Papaver somniferum HOM05D000084 ORTHO05D000639 3.8e-20 101.7 98 62.2
Sabra03G0103500 Salix brachista HOM05D000084 ORTHO05D000639 3.8e-20 101.7 96 65.6
Lj1g0010965 Lotus japonicus HOM05D000084 ORTHO05D000639 8.5e-20 100.5 107 64.5
Psat5g058480 Pisum sativum HOM05D000084 ORTHO05D000639 8.5e-20 100.5 97 62.9
Glyma.05G195300 Glycine max HOM05D000084 ORTHO05D000639 1.1e-19 100.1 93 67.7
Glyma.08G002900 Glycine max HOM05D000084 ORTHO05D000639 1.5e-19 99.8 93 66.7
COL.COLO4_10747 Corchorus olitorius HOM05D000084 ORTHO05D000639 2.5e-19 99.0 97 67.0
Phvul.002G275500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 3.2e-19 98.6 92 70.7
HPP92_014416 Vanilla planifolia HOM05D000084 ORTHO05D000639 9.4e-19 97.1 100 59.0
HPP92_014422 Vanilla planifolia HOM05D000084 ORTHO05D000639 9.4e-19 97.1 100 59.0
Sabra15G0063800 Salix brachista HOM05D000084 ORTHO05D000639 1.2e-18 96.7 96 65.6
Hund07215 Selenicereus undatus HOM05D000084 ORTHO05D000639 2.7e-18 95.5 71 69.0
Gohir.A13G011200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 1.4e-17 93.2 97 58.8
Lalb_Chr11g0068711 Lupinus albus HOM05D000084 ORTHO05D000639 3.0e-17 92.0 97 60.8
THA.LOC104818409 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 3.0e-17 92.0 96 53.1
Sabra15G0056100 Salix brachista HOM05D000084 ORTHO05D000639 4.0e-17 91.7 105 59.0
AL8G40730 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 5.2e-17 91.3 98 57.1
Sc16g0009660 Simmondsia chinensis HOM05D000084 ORTHO05D000639 6.7e-17 90.9 75 69.3
Thhalv10004142m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 1.2e-16 90.1 101 55.4
Sp2g26700 Schrenkiella parvula HOM05D000084 ORTHO05D000639 1.5e-16 89.7 99 60.6
Carub.0008s2437 Capsella rubella HOM05D000084 ORTHO05D000639 2.0e-16 89.4 107 51.4
Ah.02g117600 Amaranthus hybridus HOM05D000084 ORTHO05D000639 2.6e-16 89.0 72 66.7
BcaC04g23342 Brassica carinata HOM05D000084 ORTHO05D000639 1.3e-15 86.7 98 55.1
C09p09450 Brassica napus HOM05D000084 ORTHO05D000639 1.3e-15 86.7 98 55.1
BolC9t53857H Brassica oleracea HOM05D000084 ORTHO05D000639 1.3e-15 86.7 98 55.1
A09p08370 Brassica napus HOM05D000084 ORTHO05D000639 1.7e-15 86.3 98 55.1
BraA09t36486Z Brassica rapa HOM05D000084 ORTHO05D000639 1.7e-15 86.3 98 55.1
Hma1.2p1_0134F.1_g061600 Hydrangea macrophylla HOM05D000084 ORTHO05D024740 4.8e-15 84.7 62 69.4
arahy.Tifrunner.gnm1.ann1.2JWH31 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.8e-14 82.8 75 68.0
arahy.Tifrunner.gnm1.ann1.LW25T7 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.8e-14 82.8 75 68.0
CARHR277490 Cardamine hirsuta HOM05D000084 ORTHO05D000639 1.8e-14 82.8 98 56.1
AT5G63610 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 2.4e-14 82.4 98 52.0
CDE08G0532 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 3.1e-14 82.0 96 50.0
CDE06G1260 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 4.1e-14 81.6 96 50.0
unitig_60.g25591 Utricularia gibba HOM05D000084 ORTHO05D000639 3.5e-13 78.6 90 52.2
Os10g0580300 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D000639 1.7e-12 76.3 98 53.1
BcaB04g19936 Brassica carinata HOM05D000084 ORTHO05D000639 8.5e-12 73.9 100 53.0
Aa31LG1G18320 Aethionema arabicum HOM05D000084 ORTHO05D000639 4.2e-11 71.6 89 49.4
Lsat_1_v5_gn_5_68981 Lactuca sativa HOM05D000084 ORTHO05D000639 9.4e-11 70.5 101 51.5
AUR62006902 Chenopodium quinoa HOM05D000084 ORTHO05D000639 1.2e-10 70.1 57 68.4
MBI06_g01069_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 8.0e-10 67.4 74 54.1
HanXRQChr15g0468931 Helianthus annuus HOM05D000084 ORTHO05D000639 4.0e-09 65.1 74 59.5
VMungo0251G1725 Vigna mungo HOM05D000084 ORTHO05D000639 1.2e-08 63.5 58 67.2


User provided reference genes

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