Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.4e-62 242.7 117 100.0
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.1e-61 238.8 116 98.3
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.0e-59 232.3 116 95.7
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.7e-58 229.2 116 94.0
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 4.8e-58 227.6 116 93.1
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.2e-56 223.0 116 89.7
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 2.6e-56 221.9 115 90.4
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.3e-55 219.5 115 90.4
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.8e-55 218.0 116 88.8
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.2e-54 214.5 115 88.7
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 3.6e-53 211.5 115 86.1
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 4.7e-53 211.1 115 86.1
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 6.1e-53 210.7 116 87.1
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 8.0e-53 210.3 116 86.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.0e-52 209.9 116 86.2
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.8e-52 209.1 116 87.1
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.3e-52 208.8 116 85.3
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 4.0e-52 208.0 115 84.3
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 4.0e-52 208.0 115 84.3
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 4.0e-52 208.0 115 84.3
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 2.0e-51 205.7 125 80.0
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.6e-51 205.3 116 87.1
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 3.3e-51 204.9 116 86.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 4.4e-51 204.5 115 83.5
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.4e-51 204.5 116 86.2
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 5.7e-51 204.1 116 85.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 5.7e-51 204.1 106 89.6
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 7.5e-51 203.8 116 86.2
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.3e-50 203.0 116 85.3
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.2e-50 202.2 113 85.8
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 3.7e-50 201.4 116 86.2
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.7e-50 201.4 105 91.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.7e-50 201.4 105 89.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 4.8e-50 201.1 106 88.7
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 6.3e-50 200.7 116 86.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 8.2e-50 200.3 115 85.2
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 8.2e-50 200.3 116 85.3
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.1e-49 199.9 115 85.2
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.1e-49 199.9 115 85.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.1e-49 199.9 114 84.2
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.1e-49 199.9 116 84.5
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.4e-49 199.5 116 85.3
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 1.4e-49 199.5 116 85.3
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.8e-49 199.1 116 83.6
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 3.1e-49 198.4 116 84.5
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 3.1e-49 198.4 116 84.5
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.1e-49 198.4 106 89.6
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 4.1e-49 198.0 117 84.6
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 5.3e-49 197.6 116 83.6
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 9.1e-49 196.8 116 83.6
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.2e-48 196.4 116 82.8
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.2e-48 196.4 116 82.8
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 2.0e-48 195.7 116 83.6
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.0e-48 195.7 115 80.9
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.0e-48 195.7 171 63.2
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.7e-48 195.3 115 81.7
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.7e-48 195.3 116 84.5
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 2.7e-48 195.3 115 84.3
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.5e-48 194.5 116 82.8
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 5.9e-48 194.1 116 83.6
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.9e-48 194.1 116 80.2
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 7.7e-48 193.7 116 81.9
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 7.7e-48 193.7 116 83.6
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.7e-47 192.6 116 82.8
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 3.8e-47 191.4 116 82.8
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 5.0e-47 191.0 116 81.0
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 6.5e-47 190.7 116 80.2
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.5e-47 190.7 116 81.0
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.5e-47 190.7 116 82.8
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 8.5e-47 190.3 114 79.8
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.1e-46 189.9 116 81.0
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.5e-46 188.7 116 79.3
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.5e-46 188.7 118 81.4
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.2e-46 188.3 116 78.4
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 3.2e-46 188.3 116 79.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 3.2e-46 188.3 114 78.1
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 4.2e-46 188.0 116 81.0
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 4.2e-46 188.0 116 79.3
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 5.5e-46 187.6 116 81.0
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 7.2e-46 187.2 118 79.7
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 7.2e-46 187.2 117 79.5
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 9.4e-46 186.8 116 79.3
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 9.4e-46 186.8 114 79.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 9.4e-46 186.8 117 79.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.2e-45 186.4 116 80.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.7e-45 185.3 115 78.3
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 4.7e-45 184.5 114 76.3
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 4.7e-45 184.5 114 76.3
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 4.7e-45 184.5 114 76.3
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 4.7e-45 184.5 114 76.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.7e-45 184.5 107 84.1
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.7e-45 184.5 107 84.1
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 4.7e-45 184.5 116 78.4
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 4.7e-45 184.5 114 76.3
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 4.7e-45 184.5 114 78.9
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 6.1e-45 184.1 114 76.3
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.0e-44 183.3 114 77.2
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-44 183.3 117 76.9
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.0e-44 181.8 117 77.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.0e-44 181.8 116 78.4
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 6.8e-44 180.6 114 74.6
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 6.8e-44 180.6 116 75.0
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.8e-44 180.6 116 75.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.8e-44 180.6 116 75.0
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.8e-44 180.3 116 75.9
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.2e-43 179.9 114 75.4
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.2e-43 179.9 107 84.1
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.5e-43 179.5 106 84.9
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 2.0e-43 179.1 117 76.1
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.6e-43 178.7 114 77.2
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 7.5e-43 177.2 116 73.3
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.3e-42 176.4 107 79.4
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.3e-42 176.4 114 74.6
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.2e-42 175.6 116 75.9
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 6.3e-42 174.1 116 75.0
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 6.3e-42 174.1 114 75.4
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 6.3e-42 174.1 138 67.4
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.4e-41 172.9 114 72.8
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.4e-41 172.2 116 74.1
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.1e-41 171.8 107 80.4
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.0e-40 169.1 114 70.2
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.0e-40 169.1 116 72.4
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 7.7e-40 167.2 155 58.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.0e-39 166.8 116 70.7
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 5.0e-39 164.5 107 75.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.6e-39 164.1 106 79.2
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-38 163.3 103 74.8
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.1e-38 163.3 103 74.8
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-38 163.3 110 74.5
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.3e-38 161.8 116 69.0
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 9.5e-38 160.2 107 72.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-37 159.8 147 58.5
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.6e-37 159.5 105 75.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.8e-37 158.7 106 74.5
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.4e-36 156.4 107 72.9
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 3.4e-35 151.8 105 70.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.1e-33 146.7 79 87.3
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 7.0e-33 144.1 96 75.0
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.6e-32 142.9 116 67.2
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 1.0e-31 140.2 79 83.5
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.3e-31 139.8 126 61.9
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.9e-31 138.7 79 81.0
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-30 136.7 116 61.2
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-30 136.7 116 61.2
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-30 136.7 116 61.2
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 3.6e-29 131.7 74 86.5
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.4e-28 129.8 105 65.7
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.6e-27 125.6 114 56.1
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 3.7e-26 121.7 134 52.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 4.9e-26 121.3 77 83.1
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.2e-21 106.7 57 87.7
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 4.0e-20 101.7 116 44.0
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 8.9e-20 100.5 57 80.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 2.0e-19 99.4 76 61.8
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 3.4e-19 98.6 76 63.2
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.3e-18 96.7 59 81.4
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.2e-18 95.9 83 63.9
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 2.9e-18 95.5 76 61.8
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 4.1e-17 91.7 42 95.2
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 7.0e-17 90.9 47 83.0
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 7.3e-14 80.9 47 78.7
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 8.1e-13 77.4 105 41.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.5e-11 73.2 126 35.7
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 1.6e-08 63.2 39 71.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 3.3e-06 55.5 146 30.8


User provided reference genes

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