Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-105 386.0 235 100.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.7e-57 225.7 171 66.1
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 5.3e-56 221.9 167 66.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.2e-55 220.7 169 69.2
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.4e-53 213.8 166 68.7
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.3e-51 206.5 166 66.9
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.9e-51 205.7 168 61.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.7e-51 204.9 168 61.3
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-50 203.0 171 59.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.1e-48 197.6 168 60.1
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-48 197.6 172 57.6
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.8e-48 196.8 152 65.1
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.2e-47 194.1 150 68.7
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.2e-47 194.1 182 56.6
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.2e-46 189.9 172 57.6
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.8e-46 189.1 170 55.9
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 3.8e-46 189.1 155 61.9
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.8e-46 189.1 154 60.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.0e-46 188.7 174 55.7
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.5e-46 188.3 157 58.6
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.1e-45 187.6 169 56.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.5e-45 187.2 152 61.8
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.5e-45 187.2 170 54.1
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.5e-45 186.4 155 61.9
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 9.4e-45 184.5 154 57.8
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 9.4e-45 184.5 151 61.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-44 184.1 175 55.4
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.6e-44 183.7 172 57.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.1e-44 183.3 162 58.6
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.7e-44 183.0 175 55.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.7e-44 183.0 172 55.2
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 4.7e-44 182.2 153 59.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 4.7e-44 182.2 167 56.3
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 6.1e-44 181.8 154 57.8
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 6.1e-44 181.8 166 57.8
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.0e-43 181.0 156 59.6
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 5.2e-43 178.7 156 58.3
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 8.8e-43 177.9 151 58.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 8.8e-43 177.9 169 55.0
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.5e-42 177.2 166 55.4
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.5e-42 177.2 155 58.1
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.5e-42 177.2 154 55.8
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 2.0e-42 176.8 170 53.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.0e-42 176.8 154 57.1
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 2.0e-42 176.8 154 55.8
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.6e-42 176.4 171 56.1
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.3e-42 176.0 171 56.1
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.4e-42 175.6 173 54.3
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 4.4e-42 175.6 156 57.7
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.7e-42 175.3 164 56.7
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.7e-42 175.3 156 58.3
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.7e-42 174.5 132 66.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 9.7e-42 174.5 165 50.9
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 9.7e-42 174.5 170 53.5
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.3e-41 174.1 176 51.7
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.7e-41 173.7 154 54.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.7e-41 172.6 166 54.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 4.8e-41 172.2 172 51.7
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 6.3e-41 171.8 164 55.5
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 3.1e-40 169.5 158 56.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 5.3e-40 168.7 171 52.0
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 5.3e-40 168.7 166 51.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 5.3e-40 168.7 173 52.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 9.1e-40 167.9 164 54.3
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.6e-39 167.2 150 54.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.0e-39 166.8 173 50.9
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.0e-39 166.8 184 50.5
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 2.7e-39 166.4 157 52.2
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.9e-38 162.9 150 57.3
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.9e-38 162.9 162 50.6
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.5e-37 159.8 149 53.0
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 3.2e-37 159.5 163 50.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.4e-37 157.9 152 53.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-36 157.5 161 50.9
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-36 156.8 272 44.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.1e-36 156.8 147 54.4
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 8.0e-36 154.8 179 45.8
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.0e-36 154.8 161 49.1
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.0e-35 152.5 150 52.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 6.8e-35 151.8 152 51.3
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.0e-34 150.2 150 48.7
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 4.4e-34 149.1 152 50.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 7.5e-34 148.3 159 50.3
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 7.5e-34 148.3 162 48.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.3e-33 147.5 153 42.5
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 4.8e-33 145.6 150 45.3
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.8e-33 145.6 158 43.7
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 8.3e-33 144.8 151 43.7
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-32 143.3 136 55.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.1e-32 142.9 150 42.7
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 5.4e-32 142.1 151 42.4
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 7.0e-32 141.7 165 46.7
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.1e-32 141.4 158 51.3
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.2e-31 141.0 151 42.4
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.2e-31 141.0 151 42.4
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 4.5e-31 139.0 168 45.8
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.2e-30 136.7 151 39.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.2e-30 136.7 153 41.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.5e-29 134.0 172 44.2
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.2e-29 132.9 154 48.1
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 5.5e-29 132.1 156 39.1
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 7.2e-29 131.7 183 37.2
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 7.2e-29 131.7 146 42.5
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 9.5e-29 131.3 156 39.7
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.2e-28 131.0 173 42.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.1e-28 130.2 173 42.8
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.0e-28 128.3 183 36.6
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.0e-27 127.9 145 50.3
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.8e-27 127.1 153 39.2
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.3e-27 126.7 174 37.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.3e-27 126.7 153 39.9
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 3.0e-27 126.3 136 50.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 8.8e-27 124.8 161 43.5
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.0e-26 123.6 152 44.7
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.8e-25 119.8 105 55.2
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 6.3e-25 118.6 152 39.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.4e-24 117.5 153 37.9
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.1e-24 115.9 153 39.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.1e-24 115.9 153 39.2
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.4e-24 115.5 153 38.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 5.9e-23 112.1 235 32.3
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.9e-23 112.1 153 35.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.0e-22 109.0 168 33.9
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 8.6e-22 108.2 191 34.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.2e-20 104.4 160 35.0
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 4.7e-20 102.4 107 52.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.8e-19 100.5 81 60.5
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.8e-19 100.5 81 60.5
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.0e-19 99.8 94 53.2
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-18 97.8 81 60.5
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.0e-18 97.1 104 45.2
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.7e-17 94.0 73 64.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.9e-17 93.2 73 63.0
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.9e-17 93.2 108 44.4
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 5.4e-16 89.0 154 31.2
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 4.6e-15 85.9 166 30.7
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.6e-10 70.1 102 36.3
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 5.8e-10 68.9 122 35.2
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 2.0e-07 60.5 74 39.2
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 4.6e-07 59.3 85 40.0
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.0e-07 58.9 66 36.4


User provided reference genes

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