Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.9e-69 265.0 124 100.0
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.4e-63 246.1 124 95.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.8e-48 195.3 124 75.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 5.0e-45 184.5 122 71.3
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.1e-44 183.3 124 68.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.2e-44 181.4 122 68.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 5.5e-44 181.0 124 67.7
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 1.2e-43 179.9 124 70.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 1.2e-43 179.9 124 70.2
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.6e-43 179.5 124 68.5
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 6.1e-43 177.6 124 67.7
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 8.8e-42 173.7 124 66.9
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.3e-41 171.8 124 65.3
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 7.4e-41 170.6 124 64.5
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 2.8e-40 168.7 121 64.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 6.3e-40 167.5 122 62.3
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 3.1e-39 165.2 124 61.3
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 4.1e-39 164.9 122 60.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 5.3e-39 164.5 124 64.5
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 3.2e-36 155.2 120 58.3
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 7.2e-36 154.1 110 69.1
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.1e-33 146.7 122 55.7
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.4e-33 144.8 107 67.3
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 4.4e-33 144.8 120 53.3
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 4.4e-33 144.8 122 55.7
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 7.4e-33 144.1 120 53.3
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 9.7e-33 143.7 130 56.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 9.7e-33 143.7 130 56.2
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.2e-32 142.5 128 53.9
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 6.3e-32 141.0 127 53.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 3.1e-31 138.7 126 50.8
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 4.1e-31 138.3 122 55.7
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 9.1e-31 137.1 122 53.3
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.6e-30 135.6 121 54.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 3.5e-30 135.2 122 52.5
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 4.5e-30 134.8 124 58.1
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 5.9e-30 134.4 122 52.5
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 7.7e-30 134.0 122 54.1
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 7.7e-30 134.0 122 53.3
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.0e-29 133.7 122 51.6
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.0e-29 133.7 122 54.1
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.3e-29 133.3 125 50.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 6.5e-29 131.0 122 52.5
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 6.5e-29 131.0 122 50.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.5e-28 129.8 122 51.6
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.5e-28 129.8 127 48.8
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 4.2e-28 128.3 121 52.9
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 7.2e-28 127.5 134 49.3
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 7.2e-28 127.5 121 52.1
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 7.2e-28 127.5 131 48.9
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 9.4e-28 127.1 122 50.0
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.4e-28 127.1 113 54.9
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.6e-27 126.3 122 50.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 2.1e-27 125.9 121 50.4
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.1e-27 125.9 120 50.8
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.7e-27 125.6 122 50.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 3.6e-27 125.2 124 50.8
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.6e-27 125.2 120 52.5
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 6.1e-27 124.4 121 49.6
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 6.1e-27 124.4 121 49.6
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 6.1e-27 124.4 121 49.6
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 6.1e-27 124.4 121 49.6
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 6.1e-27 124.4 121 49.6
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 6.1e-27 124.4 121 49.6
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.1e-27 124.4 113 54.0
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 8.0e-27 124.0 124 52.4
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.0e-26 123.6 121 48.8
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.0e-26 123.6 122 50.8
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.0e-26 123.6 122 48.4
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.4e-26 123.2 122 49.2
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.4e-26 123.2 122 48.4
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.3e-26 122.5 121 48.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 4.0e-26 121.7 121 47.9
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.2e-26 121.3 121 51.2
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 5.2e-26 121.3 121 47.9
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 5.2e-26 121.3 121 47.9
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 5.2e-26 121.3 121 48.8
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.7e-26 120.9 122 49.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.1e-25 120.2 113 50.4
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-25 120.2 122 48.4
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.5e-25 119.8 121 49.6
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.5e-25 119.8 123 51.2
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.0e-25 119.4 121 47.9
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 2.6e-25 119.0 128 45.3
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 3.3e-25 118.6 115 49.6
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.4e-25 118.2 121 47.9
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 5.7e-25 117.9 127 48.0
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 5.7e-25 117.9 121 47.1
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 7.5e-25 117.5 121 47.9
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.7e-24 116.3 121 47.1
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.2e-24 115.9 130 46.9
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.7e-24 115.2 121 47.1
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.8e-24 114.8 122 50.0
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.8e-24 114.8 122 50.0
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 4.8e-24 114.8 122 50.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 8.2e-24 114.0 116 47.4
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 8.2e-24 114.0 115 50.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.4e-23 113.2 121 46.3
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 2.4e-23 112.5 122 48.4
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 7.7e-22 107.5 121 43.8
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.3e-21 106.7 121 45.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 8.0e-19 97.4 119 41.2
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 2.0e-17 92.8 113 43.4
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.7e-17 91.3 80 52.5
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 2.2e-16 89.4 99 45.5
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.8e-16 89.0 155 32.9
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 4.8e-16 88.2 81 51.9
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.4e-15 85.9 119 39.5
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 4.1e-15 85.1 121 38.0
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 4.1e-15 85.1 91 46.2
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 7.7e-14 80.9 90 44.4
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 8.5e-13 77.4 54 59.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.5e-12 76.6 117 35.9
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.2e-11 73.6 61 55.7
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.1e-11 72.8 53 54.7
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 2.7e-11 72.4 130 32.3
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 6.1e-11 71.2 93 45.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.0e-11 70.9 61 52.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.3e-10 69.3 59 45.8
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 6.8e-10 67.8 82 41.5
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.8e-09 63.9 78 42.3
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-08 63.5 84 39.3
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.2e-08 62.8 73 41.1
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.2e-08 62.8 45 62.2
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 6.3e-08 61.2 40 65.0
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 6.3e-08 61.2 73 37.0
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 1.1e-07 60.5 34 67.6
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 9.2e-07 57.4 87 33.3
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 2.0e-06 56.2 119 28.6
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 4.5e-06 55.1 40 57.5
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 4.5e-06 55.1 119 30.3


User provided reference genes

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