Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 0.0e+00 1834.3 915 100.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 0.0e+00 1681.8 842 99.2
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1134.0 888 67.9
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1129.4 888 67.6
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 0.0e+00 1102.0 870 66.4
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 6.4e-307 1057.4 898 64.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.4e-293 1013.1 961 59.2
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 9.3e-290 1000.3 872 61.7
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.3e-279 964.9 855 61.4
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 8.7e-272 940.6 870 58.4
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 4.3e-271 938.3 866 58.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.8e-269 932.9 867 57.8
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.0e-268 929.5 869 56.7
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 2.2e-267 926.0 870 56.3
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 1.9e-266 922.9 876 56.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.6e-262 909.8 872 56.8
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 7.7e-260 901.0 871 55.7
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 3.8e-259 898.7 870 56.3
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.2e-257 893.6 868 55.0
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 3.9e-256 888.6 872 55.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 8.8e-256 887.5 872 54.9
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-254 883.2 872 55.0
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.5e-252 876.7 855 56.0
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.0e-251 874.0 870 54.5
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.3e-251 873.6 872 54.0
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.7e-251 873.2 872 53.9
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 2.2e-251 872.8 867 55.7
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.6e-249 865.5 865 53.3
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.3e-247 859.0 872 54.1
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.4e-245 853.6 869 54.2
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 2.4e-245 852.8 879 53.1
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 3.5e-244 849.0 865 53.6
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 5.9e-244 848.2 854 53.3
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.9e-243 845.9 854 52.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.1e-242 844.0 871 51.9
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.5e-242 843.6 954 51.2
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.2e-242 841.3 872 53.9
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 9.4e-242 840.9 893 53.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.2e-241 840.5 854 52.9
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.7e-241 839.3 868 52.6
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 5.7e-239 831.6 849 53.4
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.2e-236 823.9 858 53.4
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 1.2e-236 823.9 858 53.4
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 1.0e-235 820.8 892 51.3
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 1.7e-235 820.1 864 51.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.2e-235 819.7 888 52.6
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.6e-231 806.2 893 50.6
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.7e-230 803.5 859 51.6
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 2.8e-230 802.7 875 52.2
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.3e-230 801.6 880 52.0
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 6.3e-230 801.6 898 51.0
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.3e-227 793.9 865 51.6
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 5.5e-226 788.5 882 51.4
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.8e-224 783.5 896 50.3
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.3e-224 783.1 859 50.5
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 3.0e-224 782.7 897 50.3
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 1.3e-222 777.3 872 49.5
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.2e-222 776.5 855 49.2
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.1e-221 774.2 867 49.6
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.4e-221 773.9 861 50.8
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.6e-220 770.4 876 50.0
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.7e-220 769.6 623 64.2
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 3.5e-220 769.2 891 48.9
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 7.8e-220 768.1 848 50.1
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.8e-217 759.6 851 48.8
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 1.8e-216 756.9 875 49.4
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 3.0e-216 756.1 852 49.6
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 4.4e-215 752.3 853 48.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.3e-214 750.7 851 48.8
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 4.6e-212 742.3 854 47.8
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 7.8e-212 741.5 737 54.3
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.7e-211 740.3 865 49.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 8.6e-211 738.0 860 48.0
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 7.3e-210 734.9 857 47.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 9.5e-210 734.6 848 49.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 9.5e-210 734.6 848 49.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.6e-209 732.6 847 49.0
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 4.7e-209 732.3 850 48.7
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 4.7e-209 732.3 755 53.2
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 6.2e-209 731.9 869 48.8
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.0e-208 729.2 841 50.7
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 2.0e-207 726.9 859 47.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 7.5e-207 724.9 835 48.1
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.2e-205 719.5 854 47.2
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 3.5e-204 716.1 928 46.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.3e-203 714.1 843 47.1
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.7e-203 713.8 846 47.5
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 2.1e-201 706.8 817 49.9
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.9e-199 698.0 737 52.8
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.7e-198 697.2 936 46.3
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.7e-198 696.0 851 46.2
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.7e-198 696.0 851 46.2
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 6.4e-198 695.3 869 45.9
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 2.4e-197 693.3 851 47.4
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 5.1e-195 685.6 854 45.4
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.6e-193 679.5 858 47.2
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 4.7e-193 679.1 852 45.1
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 2.6e-191 673.3 787 47.0
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 4.6e-188 662.5 919 44.1
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 4.0e-184 649.4 804 46.8
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.1e-180 637.1 623 56.7
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 7.8e-180 635.2 672 52.7
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.9e-179 632.9 726 48.8
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 8.1e-177 625.2 623 55.7
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 4.5e-175 619.4 869 43.3
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 9.3e-173 611.7 846 45.5
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.0e-163 581.6 653 50.8
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 6.7e-163 578.9 683 46.3
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.1e-161 573.9 764 46.3
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.1e-157 561.6 683 46.4
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 1.4e-152 544.7 557 55.3
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 1.3e-150 538.1 625 48.8
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.9e-149 534.3 867 41.3
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.5e-146 523.9 641 50.2
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.9e-143 512.7 568 51.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.0e-126 458.8 500 51.4
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 7.7e-119 432.6 643 41.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.0e-110 403.3 543 47.0
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 8.9e-107 392.5 567 43.9
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.2e-105 387.9 354 57.6
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 7.5e-98 362.8 490 44.9
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.4e-96 358.6 547 40.0
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.3e-94 351.3 378 51.1
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 4.9e-89 333.6 959 29.9
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 1.4e-83 315.5 1051 27.7
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.2e-79 302.4 476 40.1
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.1e-79 301.6 520 37.5
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 1.5e-77 295.4 279 55.2
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.9e-77 295.0 222 69.8
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 2.5e-77 294.7 669 30.3
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.2e-71 275.8 193 72.0
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 9.3e-64 249.6 305 48.5
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.3e-62 245.7 240 57.9
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 4.8e-60 237.3 185 64.9
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 1.9e-56 225.3 331 44.1
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 5.4e-56 223.8 173 63.6
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.9e-49 201.4 226 50.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 4.9e-49 200.7 181 57.5
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.0e-46 193.0 164 61.6
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.1e-45 189.5 194 53.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 5.7e-45 187.2 182 56.6
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.7e-44 184.5 252 45.6
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 1.8e-43 182.2 164 58.5
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.8e-42 177.2 459 31.4
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.4e-40 172.6 153 60.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-38 166.0 147 60.5
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 2.3e-38 165.2 123 68.3
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.9e-38 164.5 157 59.2
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 6.7e-38 163.7 272 39.3
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.8e-36 158.3 147 57.1
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 3.7e-36 157.9 112 66.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 8.2e-36 156.8 115 66.1
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-35 156.4 200 45.0
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.8e-35 155.6 115 65.2
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 7.7e-34 150.2 121 57.9
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.4e-30 139.4 148 51.4
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.4e-30 139.4 95 74.7
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.1e-30 137.5 99 71.7
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 4.3e-29 134.4 722 23.0
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.7e-28 131.3 97 70.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.3e-25 122.9 83 68.7
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.4e-24 119.4 266 31.6
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.4e-22 112.8 72 83.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 2.3e-22 112.1 276 27.9
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.1e-21 109.8 315 27.6
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 7.4e-21 107.1 80 65.0
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.1e-19 103.2 118 50.8
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 9.1e-19 100.1 196 35.2
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 9.1e-19 100.1 146 40.4
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 8.5e-17 93.6 72 69.4
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.9e-14 84.7 80 57.5
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 3.3e-13 81.6 62 72.6
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 4.4e-13 81.3 49 75.5
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 7.4e-13 80.5 153 35.3
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.2e-12 79.0 70 58.6
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.3e-11 74.3 64 65.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.5e-10 71.6 58 60.3
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.7e-09 69.3 128 36.7
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 3.8e-09 68.2 90 47.8
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 2.7e-07 62.0 237 26.2
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 1.0e-06 60.1 60 51.7


User provided reference genes

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