Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 1.4e-303 1045.4 508 100.0
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 5.4e-239 830.9 546 76.0
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 4.9e-232 807.7 472 81.4
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 8.4e-232 807.0 506 77.7
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 9.3e-223 776.9 502 75.9
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 1.6e-219 766.1 505 76.2
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 9.0e-210 733.8 513 70.2
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 1.9e-207 726.1 495 70.7
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 1.0e-205 720.3 483 72.5
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 6.7e-205 717.6 502 70.5
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 6.7e-205 717.6 505 70.3
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 8.7e-205 717.2 478 72.4
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 3.3e-204 715.3 499 70.7
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 4.3e-204 714.9 478 72.2
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 8.2e-203 710.7 514 69.1
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 2.4e-202 709.1 484 72.1
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 9.0e-202 707.2 496 68.5
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 2.0e-201 706.1 492 69.7
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 1.3e-200 703.4 497 69.4
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 2.2e-200 702.6 498 69.7
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 3.8e-200 701.8 502 68.9
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 6.5e-200 701.0 511 69.1
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 1.2e-198 696.8 498 69.5
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 1.6e-195 686.4 499 67.5
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 6.3e-195 684.5 495 67.5
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 8.2e-195 684.1 495 67.5
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.1e-194 683.7 495 67.3
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 4.1e-194 681.8 495 67.3
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 2.0e-193 679.5 499 67.3
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 3.4e-193 678.7 500 66.6
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 2.9e-192 675.6 495 67.7
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 1.4e-191 673.3 501 66.3
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 2.7e-190 669.1 490 67.6
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 4.6e-190 668.3 472 69.9
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 6.7e-189 664.5 499 66.1
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 3.3e-188 662.1 521 63.7
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 7.4e-188 661.0 497 66.0
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 2.2e-187 659.4 508 66.9
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 2.2e-187 659.4 497 65.8
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 9.1e-186 654.1 486 66.5
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 9.1e-186 654.1 504 65.3
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 3.8e-184 648.7 491 65.0
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 1.1e-183 647.1 501 64.1
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 2.5e-183 646.0 495 66.9
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 4.2e-183 645.2 521 63.5
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 5.5e-183 644.8 466 69.7
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 9.4e-183 644.0 500 63.8
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 1.2e-182 643.7 493 66.3
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.1e-182 642.9 487 65.7
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.4e-181 640.2 492 63.2
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 3.0e-181 639.0 491 65.0
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 8.8e-181 637.5 512 62.7
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 9.7e-180 634.0 501 63.9
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 9.7e-180 634.0 501 64.5
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 1.3e-179 633.6 487 66.3
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 3.1e-178 629.0 528 61.2
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 7.7e-177 624.4 498 62.9
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 2.2e-176 622.9 499 63.3
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 1.4e-175 620.2 470 65.7
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 1.4e-175 620.2 501 63.3
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 7.2e-175 617.8 451 66.7
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 3.6e-174 615.5 492 64.0
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 4.7e-174 615.1 496 62.9
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 8.0e-174 614.4 451 66.5
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 1.5e-172 610.1 496 62.3
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 9.7e-172 607.4 494 63.2
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.7e-171 606.7 458 65.7
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 3.7e-171 605.5 500 61.8
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 1.4e-170 603.6 495 62.8
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 3.1e-170 602.4 459 66.7
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 4.1e-170 602.1 473 63.4
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 2.6e-169 599.4 512 61.3
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 4.5e-169 598.6 480 62.3
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 4.5e-169 598.6 491 61.5
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 4.5e-169 598.6 491 61.5
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 5.9e-169 598.2 491 60.9
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 5.9e-169 598.2 498 61.8
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 5.0e-168 595.1 503 60.8
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 6.5e-168 594.7 452 64.8
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 8.5e-168 594.3 494 61.9
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 3.2e-167 592.4 494 62.1
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 5.5e-167 591.7 501 61.7
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 1.2e-166 590.5 491 60.1
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 1.6e-166 590.1 491 59.9
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 1.0e-165 587.4 498 61.0
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 2.3e-165 586.3 527 57.9
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 2.2e-160 569.7 488 59.2
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 1.3e-155 553.9 450 63.3
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 3.7e-155 552.4 493 58.6
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 4.1e-154 548.9 488 57.8
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 2.7e-153 546.2 508 54.3
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 1.1e-151 540.8 443 62.8
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 1.5e-151 540.4 490 57.1
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 1.9e-151 540.0 511 55.6
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 3.4e-140 502.7 494 55.3
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 5.8e-140 501.9 506 52.6
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 9.8e-140 501.1 498 53.2
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 1.1e-138 497.7 495 57.4
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 8.0e-134 481.5 318 73.9
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 3.2e-130 469.5 352 67.3
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.3e-123 447.6 553 43.6
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 1.0e-120 438.0 490 47.8
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 7.6e-116 421.8 417 53.0
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 1.7e-115 420.6 554 43.7
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.7e-113 413.3 358 59.2
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 2.5e-111 406.8 314 65.6
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.7e-107 394.0 408 52.7
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 2.1e-102 377.1 495 45.5
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 1.6e-97 360.9 467 44.8
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.3e-83 314.7 286 56.6
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 5.5e-74 282.7 449 41.2
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 3.0e-64 250.4 327 41.9
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 2.6e-63 247.3 144 81.2
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 1.0e-59 235.3 402 33.6
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 1.3e-46 191.8 710 25.9
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 1.4e-40 171.8 339 32.7
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 2.2e-38 164.5 144 58.3
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 5.6e-34 149.8 95 70.5
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 8.3e-30 136.0 78 83.3
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 3.3e-26 124.0 136 52.2
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 5.6e-26 123.2 137 51.1
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 3.0e-11 74.3 60 63.3
Actinidia20496 Actinidia chinensis HOM05D006341 ORTHO05D000377 8.4e-06 56.2 42 64.3


User provided reference genes

Program Settings