Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.2e-279 964.9 461 100.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-243 846.3 497 85.5
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.3e-243 844.3 497 85.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 9.4e-190 667.2 497 69.6
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.0e-188 662.1 497 68.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.2e-184 650.2 562 62.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.1e-177 625.2 498 64.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 9.4e-166 587.4 476 62.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.0e-164 583.9 497 60.0
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.8e-164 583.2 497 62.4
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.8e-164 583.2 509 59.1
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.8e-164 583.2 493 61.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 7.5e-163 577.8 508 58.9
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-162 577.0 565 56.8
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.7e-162 575.5 497 59.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 3.7e-162 575.5 497 59.8
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-160 570.5 496 61.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.0e-160 569.7 497 60.6
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.7e-160 569.3 500 62.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.9e-159 565.8 499 59.3
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.0e-159 565.1 454 63.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.5e-158 562.8 499 58.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.3e-158 562.4 501 60.1
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 9.5e-158 560.8 437 64.5
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.6e-157 558.9 458 62.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 8.0e-157 557.8 440 64.5
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 5.7e-155 551.6 497 59.0
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-154 550.1 406 67.2
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 4.1e-153 545.4 432 64.6
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.0e-152 543.1 499 58.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.8e-152 541.2 440 62.7
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.8e-152 541.2 499 56.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.9e-151 538.9 484 59.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 9.5e-150 534.3 497 57.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.1e-149 533.1 426 65.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.8e-149 532.7 495 55.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.6e-149 532.3 423 64.5
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 6.2e-149 531.6 438 62.1
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.3e-148 529.6 501 57.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.8e-148 528.1 440 61.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.2e-147 527.3 444 59.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.5e-147 526.9 448 60.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 7.5e-147 524.6 407 64.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.2e-146 523.1 430 61.9
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 6.4e-146 521.5 448 60.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.1e-145 518.8 481 58.0
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 7.0e-145 518.1 447 60.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.2e-144 517.3 472 58.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.5e-144 515.8 448 60.5
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.0e-143 514.2 447 59.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.0e-143 512.7 447 59.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.9e-143 512.3 410 63.2
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 6.6e-143 511.5 412 63.3
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.2e-141 507.3 499 55.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.2e-141 507.3 499 55.3
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.6e-141 506.9 471 56.9
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.7e-141 505.4 464 56.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.1e-140 504.2 414 62.3
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.4e-140 503.8 407 62.9
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.4e-140 503.8 448 59.4
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-140 503.1 435 60.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.1e-140 502.7 428 61.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 4.0e-140 502.3 475 57.5
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.2e-140 501.9 463 58.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 8.9e-140 501.1 475 57.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-139 500.7 455 59.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.2e-139 500.7 457 58.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.4e-139 499.2 454 59.0
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 7.5e-139 498.0 455 58.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.9e-138 496.1 414 61.1
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 6.4e-138 495.0 387 64.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.4e-137 493.0 472 57.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 5.4e-137 491.9 472 56.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.6e-136 488.8 406 61.3
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 6.0e-136 488.4 311 76.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.0e-135 487.6 434 57.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.3e-135 487.3 417 61.4
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.7e-135 486.9 457 56.5
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 6.6e-135 485.0 749 40.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.9e-134 483.4 411 60.3
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 3.3e-134 482.6 434 55.8
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.6e-133 480.3 434 57.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.8e-133 479.6 501 54.7
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.7e-133 478.8 432 56.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.1e-133 478.0 420 58.1
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.8e-132 476.9 425 59.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.1e-132 476.1 414 59.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.2e-132 475.3 408 61.3
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 6.8e-132 474.9 435 58.6
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.4e-131 472.2 428 56.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.8e-131 471.9 403 59.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 7.6e-131 471.5 446 55.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 7.6e-131 471.5 430 58.4
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-129 466.8 430 57.9
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.2e-129 466.1 432 57.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.2e-129 466.1 423 58.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.2e-129 464.5 428 55.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.6e-128 463.8 431 57.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.6e-128 463.8 430 57.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.0e-128 461.8 407 59.5
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.8e-128 461.5 430 57.7
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.0e-127 461.1 426 54.9
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.0e-127 459.5 450 54.2
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.9e-126 456.8 378 59.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.3e-126 454.9 429 55.0
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.2e-125 454.1 428 53.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.6e-125 453.8 429 56.2
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.8e-125 453.0 370 60.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 8.1e-125 451.4 539 47.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.1e-124 451.1 426 57.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 8.9e-124 448.0 356 61.2
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.4e-123 446.0 413 55.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.4e-123 445.7 442 53.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 5.8e-123 445.3 424 53.8
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 5.8e-123 445.3 424 53.8
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 5.8e-123 445.3 392 56.4
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 7.6e-123 444.9 416 56.0
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 9.9e-123 444.5 424 53.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.9e-123 444.5 425 55.1
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.8e-122 442.6 413 54.7
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 6.4e-122 441.8 417 54.9
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 6.4e-122 441.8 402 56.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.1e-121 441.0 418 54.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-121 439.5 403 55.3
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-121 439.5 403 55.3
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.2e-121 439.5 403 55.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 3.2e-121 439.5 374 58.6
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.2e-121 439.1 395 56.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.6e-120 437.2 405 56.8
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.1e-120 436.8 419 53.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.3e-119 433.3 377 56.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 5.1e-119 432.2 433 53.1
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.1e-119 432.2 451 53.0
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 8.7e-119 431.4 451 53.0
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 2.5e-118 429.9 434 53.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 9.6e-118 427.9 411 55.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.1e-117 426.8 366 58.7
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.4e-115 419.5 311 67.2
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.3e-110 402.5 318 63.2
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 4.0e-108 396.0 428 50.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.7e-106 390.6 369 52.0
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.1e-100 371.3 405 48.1
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 3.1e-100 369.8 307 59.6
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.7e-98 364.0 409 46.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.9e-98 362.5 314 58.6
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.2e-91 341.3 379 48.5
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.2e-89 332.8 260 63.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.3e-87 327.8 225 72.0
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.5e-74 282.3 221 65.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.4e-73 278.5 228 66.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 3.2e-65 253.4 194 61.9
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 6.7e-63 245.7 175 64.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.6e-62 243.8 278 51.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-60 236.9 417 43.2
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 6.8e-55 219.2 305 42.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.7e-53 214.5 244 48.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.2e-48 198.4 317 37.9
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 8.3e-37 159.1 385 31.4
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.6e-34 149.4 148 55.4
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.1e-33 148.7 223 39.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 8.3e-29 132.5 118 55.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.0e-27 127.9 156 44.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.5e-27 127.1 100 63.0
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 7.8e-27 125.9 135 51.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-20 104.4 125 50.4
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.1e-19 101.3 125 43.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.4e-15 87.8 119 47.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.8e-14 83.2 106 47.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 9.9e-14 82.4 158 32.9
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.6e-11 73.6 47 70.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.0e-10 72.4 48 62.5
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.9e-10 70.5 208 30.8


User provided reference genes

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