Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003956 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D005993 2.0e-123 445.7 210 100.0
Actinidia04131 Actinidia chinensis HOM05D000306 ORTHO05D005993 8.0e-88 327.4 192 82.3
Dinv41268 Davidia involucrata HOM05D000306 ORTHO05D005993 3.2e-84 315.5 192 78.1
Rhsim01G0006800 Rhododendron simsii HOM05D000306 ORTHO05D005993 1.6e-83 313.2 192 79.7
TAR625G0692 Trochodendron aralioides HOM05D000306 ORTHO05D005993 3.6e-80 302.0 183 78.7
GSVIVG01029151001 Vitis vinifera HOM05D000306 ORTHO05D005993 6.2e-80 301.2 192 74.5
PSO063G2401 Papaver somniferum HOM05D000306 ORTHO05D005993 8.9e-79 297.4 192 73.4
PSO782G0277 Papaver somniferum HOM05D000306 ORTHO05D005993 4.4e-78 295.0 192 72.9
MSTRG.19696 Avicennia marina HOM05D000306 ORTHO05D005993 9.8e-78 293.9 200 71.0
Hma1.2p1_1022F.1_g248750 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 4.9e-77 291.6 192 72.4
Hma1.2p1_1022F.1_g248760 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 4.9e-77 291.6 192 72.4
Hma1.2p1_1423F.1_g282650 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 4.9e-77 291.6 192 72.4
DCAR_009913 Daucus carota HOM05D000306 ORTHO05D005993 1.1e-76 290.4 192 72.4
HanXRQChr03g0068921 Helianthus annuus HOM05D000306 ORTHO05D005993 1.9e-76 289.7 190 71.1
QL02p097337 Quercus lobata HOM05D000306 ORTHO05D005993 1.9e-76 289.7 192 71.4
CiPaw.07G190100 Carya illinoinensis HOM05D000306 ORTHO05D005993 2.4e-76 289.3 192 71.4
Lj9A687T82 Lonicera japonica HOM05D000306 ORTHO05D005993 3.2e-76 288.9 182 74.7
Cfa013519 Carpinus fangiana HOM05D000306 ORTHO05D005993 7.1e-76 287.7 182 75.3
Migut.J01457 Erythranthe guttata HOM05D000306 ORTHO05D005993 7.1e-76 287.7 192 71.9
Potri.006G170400 Populus trichocarpa HOM05D000306 ORTHO05D005993 7.1e-76 287.7 200 68.5
Aqoxy7G03117 Aquilegia oxysepala HOM05D000306 ORTHO05D005993 9.2e-76 287.3 200 66.5
Ciclev10007423m.g Citrus clementina HOM05D000306 ORTHO05D005993 9.2e-76 287.3 192 71.4
Manes.06G023800 Manihot esculenta HOM05D000306 ORTHO05D005993 9.2e-76 287.3 192 68.2
Haze_22119 Corylus avellana HOM05D000306 ORTHO05D005993 1.2e-75 287.0 182 75.3
CDE02G3177 Ceratophyllum demersum HOM05D000306 ORTHO05D005993 3.5e-75 285.4 203 66.0
Sabra06G0131200 Salix brachista HOM05D000306 ORTHO05D005993 1.0e-74 283.9 200 67.0
Sopen07g002910 Solanum pennellii HOM05D000306 ORTHO05D005993 1.0e-74 283.9 193 72.5
Solyc07g006810.3 Solanum lycopersicum HOM05D000306 ORTHO05D005993 2.3e-74 282.7 193 72.0
Nitab4.5_0000937g0040 Nicotiana tabacum HOM05D000306 ORTHO05D005993 3.9e-74 282.0 195 72.3
Atru.chr7.720 Acer truncatum HOM05D000306 ORTHO05D005993 8.6e-74 280.8 192 69.8
CAN.G584.9 Capsicum annuum HOM05D000306 ORTHO05D005993 8.6e-74 280.8 193 72.0
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 1.5e-73 280.0 172 75.6
Nitab4.5_0000244g0320 Nicotiana tabacum HOM05D000306 ORTHO05D005993 1.5e-73 280.0 204 69.1
Peaxi162Scf00050g00628 Petunia axillaris HOM05D000306 ORTHO05D005993 1.9e-73 279.6 200 68.5
SGA_v2.0_scaffold69G23277 Striga asiatica HOM05D000306 ORTHO05D005993 5.6e-73 278.1 192 68.8
SalBow6G4076 Salvia bowleyana HOM05D000306 ORTHO05D005993 9.5e-73 277.3 192 70.3
CANSAT11G2131 Cannabis sativa HOM05D000306 ORTHO05D005993 2.1e-72 276.2 200 68.0
MD13G1267300 Malus domestica HOM05D000306 ORTHO05D005993 2.1e-72 276.2 192 69.3
RcHm_v2.0_Chr4g0403051 Rosa chinensis HOM05D000306 ORTHO05D005993 2.1e-72 276.2 182 72.0
MELO3C017490.2 Cucumis melo HOM05D000306 ORTHO05D005993 2.8e-72 275.8 192 66.7
Prupe.1G089300 Prunus persica HOM05D000306 ORTHO05D005993 2.8e-72 275.8 192 68.8
Gorai.013G246300 Gossypium raimondii HOM05D000306 ORTHO05D005993 3.6e-72 275.4 192 67.7
Sed0027913 Sechium edule HOM05D000306 ORTHO05D005993 3.6e-72 275.4 192 66.7
FAN17G3079 Fragaria x ananassa HOM05D000306 ORTHO05D005993 4.7e-72 275.0 182 72.0
TWI34G1047 Tripterygium wilfordii HOM05D000306 ORTHO05D005993 4.7e-72 275.0 192 68.8
Lsat_1_v5_gn_7_54301 Lactuca sativa HOM05D000306 ORTHO05D005993 6.2e-72 274.6 175 74.3
MBI14_g17347_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D005993 6.2e-72 274.6 195 68.7
Cpa.g.sc95.64 Carica papaya HOM05D000306 ORTHO05D005993 8.1e-72 274.2 185 69.7
Cc06_g13480 Coffea canephora HOM05D000306 ORTHO05D005993 1.1e-71 273.9 200 64.5
Gohir.A13G211900 Gossypium hirsutum HOM05D000306 ORTHO05D005993 1.1e-71 273.9 192 67.2
Duzib150G0339 Durio zibethinus HOM05D000306 ORTHO05D005993 1.8e-71 273.1 192 66.7
FAN22G2400 Fragaria x ananassa HOM05D000306 ORTHO05D005993 2.3e-71 272.7 182 71.4
AUR62040306 Chenopodium quinoa HOM05D000306 ORTHO05D005993 3.1e-71 272.3 192 66.7
FvH4_4g09130 Fragaria vesca HOM05D000306 ORTHO05D005993 5.2e-71 271.6 182 71.4
Sc14g0001190 Simmondsia chinensis HOM05D000306 ORTHO05D005993 6.8e-71 271.2 192 65.6
ClCG06G013170 Citrullus lanatus HOM05D000306 ORTHO05D005993 1.5e-70 270.0 182 68.1
Thecc.09G168600 Theobroma cacao HOM05D000306 ORTHO05D005993 2.6e-70 269.2 192 66.1
unitig_749.g14164 Utricularia gibba HOM05D000306 ORTHO05D005993 3.4e-70 268.9 188 67.0
CsaV3_1G031330 Cucumis sativus L. HOM05D000306 ORTHO05D005993 7.5e-70 267.7 192 65.1
Aa31LG3G13440 Aethionema arabicum HOM05D000306 ORTHO05D005993 1.3e-69 266.9 182 68.7
BcaB08g36111 Brassica carinata HOM05D000306 ORTHO05D005993 1.7e-69 266.5 182 67.6
A10p15010 Brassica napus HOM05D000306 ORTHO05D005993 2.2e-69 266.2 182 68.1
C03p14920 Brassica napus HOM05D000306 ORTHO05D005993 2.2e-69 266.2 182 67.6
BolC3t13934H Brassica oleracea HOM05D000306 ORTHO05D005993 2.2e-69 266.2 182 67.6
AUR62040000 Chenopodium quinoa HOM05D000306 ORTHO05D005993 2.2e-69 266.2 192 65.6
PGR142G2544 Punica granatum HOM05D000306 ORTHO05D005993 2.2e-69 266.2 192 66.7
C09p49460 Brassica napus HOM05D000306 ORTHO05D005993 3.7e-69 265.4 182 67.6
BolC9t57799H Brassica oleracea HOM05D000306 ORTHO05D005993 3.7e-69 265.4 182 67.6
Lj4g0011507 Lotus japonicus HOM05D000306 ORTHO05D005993 3.7e-69 265.4 182 68.1
BcaC04g19951 Brassica carinata HOM05D000306 ORTHO05D005993 4.9e-69 265.0 182 67.6
BraA10t43578Z Brassica rapa HOM05D000306 ORTHO05D005993 4.9e-69 265.0 182 67.0
Glyma.13G094700 Glycine max HOM05D000306 ORTHO05D005993 4.9e-69 265.0 182 66.5
BraA03t10584Z Brassica rapa HOM05D000306 ORTHO05D005993 8.3e-69 264.2 182 67.0
Thhalv10012677m.g Eutrema salsugineum HOM05D000306 ORTHO05D005993 8.3e-69 264.2 182 67.6
BcaC01g06481 Brassica carinata HOM05D000306 ORTHO05D005993 1.1e-68 263.8 182 67.0
Carub.0008s1810 Capsella rubella HOM05D000306 ORTHO05D005993 1.4e-68 263.5 182 68.1
Ca_21207_v3 Cicer arietinum L. HOM05D000306 ORTHO05D005993 1.4e-68 263.5 182 68.1
VMungo1215G0493 Vigna mungo HOM05D000306 ORTHO05D005993 1.4e-68 263.5 182 65.9
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 1.9e-68 263.1 203 61.6
SHI02942 Sapria himalayana HOM05D000306 ORTHO05D005993 1.9e-68 263.1 182 68.1
Medtr4g128620 Medicago truncatula HOM05D000306 ORTHO05D005993 2.4e-68 262.7 182 68.1
Lalb_Chr07g0180301 Lupinus albus HOM05D000306 ORTHO05D005993 4.1e-68 261.9 200 62.0
CARHR271360 Cardamine hirsuta HOM05D000306 ORTHO05D005993 5.4e-68 261.5 182 65.4
Psat4g011120 Pisum sativum HOM05D000306 ORTHO05D005993 1.2e-67 260.4 172 69.8
AL8G33620 Arabidopsis lyrata HOM05D000306 ORTHO05D005993 1.6e-67 260.0 182 65.9
TPR.G5323 Trifolium pratense HOM05D000306 ORTHO05D005993 1.6e-67 260.0 192 64.6
AT5G57590 Arabidopsis thaliana HOM05D000306 ORTHO05D005993 7.8e-67 257.7 182 65.9
arahy.Tifrunner.gnm1.ann1.6YA4AW Arachis hypogaea HOM05D000306 ORTHO05D005993 7.8e-67 257.7 172 67.4
Phvul.003G147900 Phaseolus vulgaris HOM05D000306 ORTHO05D005993 1.0e-66 257.3 182 65.4
A03p12730 Brassica napus HOM05D000306 ORTHO05D005993 6.6e-66 254.6 209 59.8
arahy.Tifrunner.gnm1.ann1.MG2J04 Arachis hypogaea HOM05D000306 ORTHO05D005993 8.6e-66 254.2 172 66.3
Nn8g40500 Nelumbo nucifera HOM05D000306 ORTHO05D005993 8.6e-66 254.2 156 75.6
HPP92_013429 Vanilla planifolia HOM05D000306 ORTHO05D005993 1.6e-64 250.0 201 59.2
Zm00001eb412500 Zea mays HOM05D000306 ORTHO05D005993 1.2e-59 233.8 182 60.4
Os08g0245400 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D005993 3.0e-58 229.2 192 57.3
Mapoly0061s0099 Marchantia polymorpha HOM05D000306 ORTHO05D005993 3.9e-58 228.8 182 59.3
Hma1.2p1_0863F.1_g230000 Hydrangea macrophylla HOM05D000306 ORTHO05D005993 8.7e-58 227.6 184 64.1
EL10Ac8g18271 Beta vulgaris HOM05D000306 ORTHO05D005993 1.1e-57 227.3 182 61.5
SEGI_35821 Sequoiadendron giganteum HOM05D000306 ORTHO05D005993 1.5e-57 226.9 205 51.2
Ah.09g229770 Amaranthus hybridus HOM05D000306 ORTHO05D005993 7.3e-57 224.6 262 48.9
Hund09018 Selenicereus undatus HOM05D000306 ORTHO05D005993 6.2e-56 221.5 156 65.4
SMO146G0375 Selaginella moellendorffii HOM05D000306 ORTHO05D005993 8.1e-56 221.1 200 52.0
Pp3c17_24020 Physcomitrium patens HOM05D000306 ORTHO05D005993 1.0e-50 204.1 185 51.9
Eucgr.C00186 Eucalyptus grandis HOM05D000306 ORTHO05D005993 5.3e-39 165.2 131 55.0
CBR_g30689 Chara braunii HOM05D000306 ORTHO05D005993 3.4e-38 162.5 228 40.4
Gohir.D13G216000 Gossypium hirsutum HOM05D000306 ORTHO05D005993 5.5e-36 155.2 107 65.4
MCO16G292 Micromonas commoda HOM05D000306 ORTHO05D005993 2.3e-34 149.8 203 40.9
Cfa024735 Carpinus fangiana HOM05D000306 ORTHO05D005993 5.1e-26 122.1 198 35.4
vmacro13109 Vaccinium macrocarpon HOM05D000306 ORTHO05D005993 9.7e-25 117.9 73 79.5
Sp6g19290 Schrenkiella parvula HOM05D000306 ORTHO05D005993 1.3e-24 117.5 79 67.1
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 3.2e-20 102.8 69 63.8
Cre06.g277200 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D005993 1.4e-18 97.4 228 31.1
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 6.3e-16 88.6 63 68.3
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 1.8e-15 87.0 69 60.9
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 1.8e-15 87.0 69 60.9
C09p62180 Brassica napus HOM05D000306 ORTHO05D005993 1.8e-15 87.0 69 60.9
arahy.Tifrunner.gnm1.ann1.F592RX Arachis hypogaea HOM05D000306 ORTHO05D007065 5.3e-15 85.5 58 70.7
arahy.Tifrunner.gnm1.ann1.HK2K9G Arachis hypogaea HOM05D006158 ORTHO05D007065 5.3e-15 85.5 58 70.7
arahy.Tifrunner.gnm1.ann1.JGW43E Arachis hypogaea HOM05D000306 ORTHO05D005993 5.3e-15 85.5 163 36.8
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 1.5e-14 84.0 53 71.7
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 1.5e-14 84.0 53 71.7
arahy.Tifrunner.gnm1.ann1.S0LUWR Arachis hypogaea HOM05D000306 ORTHO05D007065 2.0e-14 83.6 53 71.7
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 2.0e-14 83.6 69 59.4
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 2.0e-14 83.6 69 59.4
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 2.0e-14 83.6 69 59.4
arahy.Tifrunner.gnm1.ann1.9D3V7N Arachis hypogaea HOM05D000129 ORTHO05D017460 7.0e-07 58.5 41 65.9
arahy.Tifrunner.gnm1.ann1.EEM62Q Arachis hypogaea HOM05D002203 ORTHO05D007065 7.0e-07 58.5 38 73.7
arahy.Tifrunner.gnm1.ann1.RYD0NS Arachis hypogaea HOM05D000129 ORTHO05D017460 2.0e-06 57.0 40 67.5


User provided reference genes

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