Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003954 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 2.0e-101 372.5 190 100.0
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 3.2e-51 205.7 146 78.8
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 6.2e-47 191.4 146 71.9
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 5.8e-45 184.9 146 69.9
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 7.9e-42 174.5 144 68.8
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 4.3e-40 168.7 136 69.9
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 7.4e-40 167.9 136 69.9
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 7.4e-40 167.9 142 65.5
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 1.3e-39 167.2 146 65.8
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 4.8e-39 165.2 142 65.5
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 6.2e-39 164.9 142 64.8
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 6.2e-39 164.9 142 65.5
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 1.4e-38 163.7 142 64.8
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 1.8e-38 163.3 139 66.2
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 3.1e-38 162.5 129 71.3
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 4.0e-38 162.2 142 64.1
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 6.9e-38 161.4 146 63.7
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 9.0e-38 161.0 139 64.7
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 1.2e-37 160.6 146 63.7
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 2.0e-37 159.8 136 66.9
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 2.0e-37 159.8 136 66.2
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 4.5e-37 158.7 144 62.5
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 4.5e-37 158.7 144 62.5
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 5.8e-37 158.3 124 66.9
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 5.8e-37 158.3 144 61.8
Lsat_1_v5_gn_2_135421 Lactuca sativa HOM05D003018 ORTHO05D003402 7.6e-37 157.9 142 63.4
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 1.0e-36 157.5 136 66.9
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 1.3e-36 157.1 136 64.7
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 1.3e-36 157.1 139 63.3
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 1.3e-36 157.1 139 63.3
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 1.3e-36 157.1 136 66.2
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 2.2e-36 156.4 144 62.5
Lalb_Chr08g0239411 Lupinus albus HOM05D003018 ORTHO05D003402 2.2e-36 156.4 128 68.8
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 2.2e-36 156.4 143 64.3
ClCG01G000020 Citrullus lanatus HOM05D003018 ORTHO05D003402 1.1e-35 154.1 134 66.4
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 1.4e-35 153.7 136 64.0
Atru.chr12.2500 Acer truncatum HOM05D003018 ORTHO05D003402 1.9e-35 153.3 136 64.0
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 1.9e-35 153.3 136 64.0
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.9e-35 153.3 143 63.6
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 2.5e-35 152.9 135 63.7
MELO3C005915.2 Cucumis melo HOM05D003018 ORTHO05D003402 3.2e-35 152.5 139 64.0
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 3.2e-35 152.5 147 61.2
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 4.2e-35 152.1 143 62.9
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 5.5e-35 151.8 136 63.2
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 7.1e-35 151.4 135 63.7
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 9.3e-35 151.0 136 64.7
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 9.3e-35 151.0 138 61.6
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.2e-34 150.6 143 62.2
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 1.6e-34 150.2 147 61.2
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 2.1e-34 149.8 144 62.5
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 2.7e-34 149.4 135 63.0
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 2.7e-34 149.4 135 60.7
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 2.7e-34 149.4 125 67.2
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 2.7e-34 149.4 136 63.2
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 3.5e-34 149.1 142 61.3
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 4.6e-34 148.7 142 56.3
TAR375G0624 Trochodendron aralioides HOM05D003018 ORTHO05D003402 4.6e-34 148.7 146 61.0
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 6.0e-34 148.3 136 63.2
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 7.9e-34 147.9 136 63.2
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 7.9e-34 147.9 138 60.1
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 7.9e-34 147.9 136 64.0
COL.COLO4_14400 Corchorus olitorius HOM05D003018 ORTHO05D003402 1.0e-33 147.5 119 68.9
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.3e-33 147.1 135 62.2
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.8e-33 146.7 136 60.3
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 1.8e-33 146.7 136 60.3
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 1.8e-33 146.7 135 61.5
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 2.3e-33 146.4 136 61.8
Gohir.D09G181900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 2.3e-33 146.4 118 69.5
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 3.9e-33 145.6 147 57.1
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 5.1e-33 145.2 139 58.3
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 1.9e-32 143.3 135 63.0
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 1.9e-32 143.3 135 63.0
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 2.5e-32 142.9 136 62.5
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 3.3e-32 142.5 136 61.0
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 3.3e-32 142.5 135 57.0
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 5.7e-32 141.7 142 59.9
CDE02G1646 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 5.7e-32 141.7 135 60.7
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 9.6e-32 141.0 134 61.9
Sabra15G0000400 Salix brachista HOM05D003018 ORTHO05D003402 9.6e-32 141.0 136 62.5
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 1.6e-31 140.2 146 57.5
Cpa.g.sc3.187 Carica papaya HOM05D003018 ORTHO05D003402 1.1e-30 137.5 124 63.7
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 1.1e-30 137.5 142 56.3
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 1.8e-30 136.7 142 54.9
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 3.1e-30 136.0 136 56.6
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.1e-30 135.6 142 54.2
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 4.1e-30 135.6 142 54.2
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 6.9e-30 134.8 146 54.1
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 9.0e-30 134.4 142 54.2
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.2e-29 134.0 135 57.0
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 2.6e-29 132.9 134 55.2
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 2.6e-29 132.9 134 55.2
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 2.6e-29 132.9 134 55.2
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 2.6e-29 132.9 138 58.0
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 2.6e-29 132.9 144 54.2
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 3.4e-29 132.5 134 55.2
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 3.4e-29 132.5 134 55.2
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 3.4e-29 132.5 139 54.0
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 3.4e-29 132.5 139 54.0
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 3.4e-29 132.5 139 54.0
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 4.5e-29 132.1 134 55.2
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 7.6e-29 131.3 235 40.4
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 7.6e-29 131.3 134 54.5
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 1.0e-28 131.0 134 54.5
THA.LOC104814958 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 2.9e-28 129.4 136 51.5
CARHR188810 Cardamine hirsuta HOM05D003018 ORTHO05D003402 8.4e-28 127.9 134 52.2
BcaB01g00697 Brassica carinata HOM05D003018 ORTHO05D003402 1.4e-27 127.1 144 50.7
C08p24540 Brassica napus HOM05D003018 ORTHO05D003402 1.4e-27 127.1 134 53.7
BolC8t50072H Brassica oleracea HOM05D003018 ORTHO05D003402 1.4e-27 127.1 134 53.7
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.4e-27 127.1 138 56.5
Gorai.007G017700 Gossypium raimondii HOM05D003018 ORTHO05D003402 1.4e-27 127.1 138 56.5
Lsat_1_v5_gn_8_4220 Lactuca sativa HOM05D003018 ORTHO05D003402 1.4e-27 127.1 144 52.1
CARHR158570 Cardamine hirsuta HOM05D003018 ORTHO05D003402 2.5e-27 126.3 144 50.0
Sp5g12550 Schrenkiella parvula HOM05D003018 ORTHO05D003402 3.2e-27 125.9 144 50.0
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 7.2e-27 124.8 134 53.0
BraA06t24904Z Brassica rapa HOM05D003018 ORTHO05D003402 7.2e-27 124.8 134 53.0
AUR62005947 Chenopodium quinoa HOM05D003018 ORTHO05D003402 7.2e-27 124.8 145 51.7
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 7.2e-27 124.8 136 50.0
A06p18200 Brassica napus HOM05D003018 ORTHO05D003402 9.3e-27 124.4 134 53.0
AUR62028118 Chenopodium quinoa HOM05D003018 ORTHO05D003402 9.3e-27 124.4 144 52.1
Psat1g196200 Pisum sativum HOM05D003018 ORTHO05D003402 9.3e-27 124.4 127 58.3
Psat6g092160 Pisum sativum HOM05D003018 ORTHO05D003402 9.3e-27 124.4 127 58.3
AT3G49560 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 2.1e-26 123.2 144 49.3
Carub.0005s1589 Capsella rubella HOM05D003018 ORTHO05D003402 2.1e-26 123.2 144 49.3
AL5G29400 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 4.6e-26 122.1 144 49.3
Thhalv10010930m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 7.9e-26 121.3 147 49.7
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 7.9e-26 121.3 234 39.7
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 1.3e-25 120.6 145 47.6
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 1.8e-25 120.2 145 52.4
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 8.7e-25 117.9 117 59.0
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 1.5e-24 117.1 143 49.7
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 5.7e-24 115.2 119 54.6
Os02g0526500 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 1.1e-22 110.9 118 53.4
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 1.4e-22 110.5 139 47.5
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 1.8e-22 110.2 133 51.1
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 2.4e-22 109.8 110 60.0
HanXRQChr15g0497021 Helianthus annuus HOM05D003018 ORTHO05D003402 6.9e-22 108.2 135 48.9
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 3.4e-21 105.9 118 53.4
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 3.4e-21 105.9 119 51.3
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 6.5e-20 101.7 143 44.1
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 1.9e-19 100.1 133 47.4
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 2.5e-19 99.8 170 43.5
AagrBONN_evm.TU.Sc2ySwM_344.126 Anthoceros agrestis HOM05D003018 ORTHO05D003402 4.2e-19 99.0 107 51.4
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 4.2e-19 99.0 119 51.3
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 6.1e-18 95.1 112 50.0
unitig_52.g16865 Utricularia gibba HOM05D003018 ORTHO05D003402 1.4e-17 94.0 138 44.9
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 2.8e-15 86.3 92 54.3
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 1.1e-14 84.3 126 44.4
AUR62030652 Chenopodium quinoa HOM05D003018 ORTHO05D003402 1.2e-13 80.9 73 58.9
ECA248G1111 Erigeron canadensis HOM05D001208 ORTHO05D001593 1.2e-13 80.9 139 38.8
ECA248G2250 Erigeron canadensis HOM05D003018 ORTHO05D003402 1.0e-12 77.8 139 38.1
PSO675G3559 Papaver somniferum HOM05D003018 ORTHO05D003402 2.5e-11 73.2 122 40.2
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 2.1e-10 70.1 62 62.9
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 6.1e-10 68.6 156 35.3
Nn7g35804 Nelumbo nucifera HOM05D003018 ORTHO05D003402 1.8e-09 67.0 64 65.6
PSO339G1784 Papaver somniferum HOM05D003018 ORTHO05D003402 6.7e-09 65.1 121 37.2
Pp3c16_18310 Physcomitrium patens HOM05D025156 ORTHO05D003402 2.0e-08 63.5 81 48.1
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 5.7e-08 62.0 55 61.8
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 5.7e-08 62.0 46 69.6
ECA248G0015 Erigeron canadensis HOM05D003018 ORTHO05D003402 9.7e-08 61.2 115 36.5
PSO724G0429 Papaver somniferum HOM05D003018 ORTHO05D003402 9.7e-08 61.2 117 36.8
PSO729G0279 Papaver somniferum HOM05D003018 ORTHO05D003402 2.2e-07 60.1 117 35.9
SEGI_07138 Sequoiadendron giganteum HOM05D003018 ORTHO05D003402 2.8e-07 59.7 76 48.7
unitig_62.g23858 Utricularia gibba HOM05D003018 ORTHO05D003402 1.1e-06 57.8 51 60.8
unitig_64.g29777 Utricularia gibba HOM05D003018 ORTHO05D003402 1.1e-06 57.8 51 60.8
Zm00001eb187080 Zea mays HOM05D003018 ORTHO05D003402 1.4e-06 57.4 75 44.0
PSO832G4292 Papaver somniferum HOM05D003018 ORTHO05D003402 3.1e-06 56.2 107 35.5
ECA232G1833 Erigeron canadensis HOM05D000455 ORTHO05D000434 7.0e-06 55.1 148 30.4
PSO339G6351 Papaver somniferum HOM05D003018 ORTHO05D003402 7.0e-06 55.1 111 35.1
PSO782G4498 Papaver somniferum HOM05D003018 ORTHO05D003402 9.1e-06 54.7 115 36.5


User provided reference genes

Program Settings