Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.6e-117 424.9 203 100.0
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.1e-93 345.9 193 86.5
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.1e-93 345.9 193 86.5
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.5e-91 339.7 209 81.3
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 4.3e-86 321.6 192 82.8
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 9.5e-86 320.5 192 83.3
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 9.5e-86 320.5 209 77.5
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 1.8e-84 316.2 193 79.3
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 4.0e-84 315.1 209 74.6
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 2.2e-82 309.3 190 77.9
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.2e-80 303.5 211 73.9
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 2.7e-80 302.4 192 77.6
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 3.9e-79 298.5 192 75.5
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 3.3e-78 295.4 194 75.3
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 3.6e-77 292.0 192 73.4
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 1.8e-76 289.7 192 72.9
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 5.2e-76 288.1 191 73.3
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 6.8e-76 287.7 192 72.4
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 2.0e-75 286.2 193 72.0
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 2.0e-75 286.2 191 73.3
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 2.0e-75 286.2 192 72.4
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 3.4e-75 285.4 192 70.8
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 3.4e-75 285.4 192 72.4
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 4.4e-75 285.0 192 72.4
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 5.8e-75 284.6 192 72.9
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 5.8e-75 284.6 191 73.3
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 5.8e-75 284.6 192 72.4
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 1.7e-74 283.1 193 73.6
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 2.9e-74 282.3 192 72.4
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 3.7e-74 282.0 192 70.3
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 4.9e-74 281.6 192 73.4
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 4.9e-74 281.6 192 72.4
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 8.3e-74 280.8 194 72.2
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 1.1e-73 280.4 192 71.9
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 1.4e-73 280.0 192 71.9
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 2.4e-73 279.3 191 70.7
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 3.2e-73 278.9 192 69.8
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 7.1e-73 277.7 190 71.1
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 7.1e-73 277.7 192 70.8
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 9.2e-73 277.3 192 71.9
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 1.2e-72 276.9 192 70.3
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 1.6e-72 276.6 192 70.8
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 2.1e-72 276.2 192 71.4
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 4.6e-72 275.0 192 69.8
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 4.6e-72 275.0 194 71.1
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 6.0e-72 274.6 192 69.8
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 7.8e-72 274.2 193 70.5
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 1.0e-71 273.9 191 67.5
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 1.7e-71 273.1 194 67.5
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 2.3e-71 272.7 191 72.8
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 2.3e-71 272.7 191 72.8
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 3.0e-71 272.3 197 71.1
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 5.1e-71 271.6 201 67.7
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 5.1e-71 271.6 192 72.4
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 6.6e-71 271.2 192 70.3
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 8.6e-71 270.8 203 65.5
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 1.1e-70 270.4 191 70.2
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 1.5e-70 270.0 202 68.3
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 1.5e-70 270.0 187 72.7
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 1.5e-70 270.0 187 72.7
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 3.3e-70 268.9 192 70.3
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 7.3e-70 267.7 194 69.6
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 1.6e-69 266.5 192 69.8
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 2.1e-69 266.2 192 69.8
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 2.1e-69 266.2 192 69.8
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 4.7e-69 265.0 192 69.8
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 6.2e-69 264.6 192 68.2
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 6.2e-69 264.6 194 68.0
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 8.1e-69 264.2 194 69.1
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 1.8e-68 263.1 194 68.0
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 3.1e-68 262.3 191 70.2
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 4.0e-68 261.9 194 67.0
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 5.2e-68 261.5 194 67.5
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 6.8e-68 261.2 194 68.0
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 6.8e-68 261.2 194 69.1
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 6.8e-68 261.2 191 68.1
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 1.5e-67 260.0 194 68.6
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 1.5e-67 260.0 194 68.6
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 1.5e-67 260.0 191 69.1
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 2.6e-67 259.2 192 68.2
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 3.4e-67 258.8 192 68.8
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 3.4e-67 258.8 192 68.8
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 4.4e-67 258.5 194 68.0
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 1.7e-66 256.5 199 66.3
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 2.2e-66 256.1 194 68.0
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 4.9e-66 255.0 191 65.4
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 8.4e-66 254.2 191 68.1
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 2.4e-65 252.7 201 65.2
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 7.1e-65 251.1 191 66.0
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 1.6e-64 250.0 191 63.4
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 1.0e-63 247.3 191 67.0
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 1.3e-63 246.9 190 65.3
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 5.1e-63 245.0 193 64.8
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 6.6e-63 244.6 193 63.7
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 5.6e-62 241.5 191 60.7
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 7.3e-62 241.1 191 61.3
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 2.9e-58 229.2 159 73.0
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 8.4e-58 227.6 182 64.8
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 3.5e-56 222.2 194 58.8
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 2.3e-55 219.5 191 60.2
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 6.9e-52 208.0 195 55.4
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 1.7e-50 203.4 195 53.8
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 2.1e-48 196.4 121 73.6
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 7.9e-48 194.5 124 71.8
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 1.7e-47 193.4 124 71.0
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 8.7e-47 191.0 202 52.0
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 2.8e-45 186.0 92 90.2
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 1.1e-44 184.1 143 65.7
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 2.2e-34 149.8 92 70.7
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 1.4e-33 147.1 137 59.1
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 2.3e-31 139.8 191 46.1
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 1.2e-27 127.5 178 42.7
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 1.0e-26 124.4 69 76.8
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.8e-26 122.5 187 41.2
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 8.7e-23 111.3 87 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 7.4e-22 108.2 194 39.2
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 1.1e-12 77.8 117 42.7
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 4.7e-08 62.4 61 42.6
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 3.9e-07 59.3 37 73.0
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 8.8e-07 58.2 36 58.3
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 4.4e-06 55.8 37 64.9
Psat7g240520 Pisum sativum HOM05D000029 ORTHO05D037355 7.4e-06 55.1 32 78.1


User provided reference genes

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