Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 0.0e+00 1377.5 712 100.0
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 0.0e+00 1372.8 712 99.7
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.0e-307 1059.7 728 76.0
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.8e-301 1038.9 730 74.8
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 6.3e-278 960.7 679 75.6
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 8.9e-264 913.7 723 67.8
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.1e-253 878.2 717 64.7
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 1.3e-251 873.2 732 63.3
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 3.3e-250 868.6 733 63.6
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 3.5e-244 848.6 738 61.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.3e-243 846.7 728 60.9
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 5.1e-243 844.7 730 62.2
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.6e-243 844.3 732 61.6
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 7.3e-242 840.9 730 61.5
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.4e-240 835.9 600 73.2
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.5e-239 833.2 730 61.5
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 6.4e-238 827.8 728 61.1
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 7.8e-236 820.8 818 59.4
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.3e-235 820.1 738 59.9
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 8.7e-235 817.4 710 60.7
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 8.7e-235 817.4 732 62.2
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.8e-232 809.7 719 60.6
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.0e-232 808.5 727 60.8
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 7.6e-231 804.3 712 60.8
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.9e-230 802.4 723 59.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.4e-229 800.0 724 60.8
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.4e-229 799.3 727 60.4
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.2e-229 798.9 725 60.1
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.0e-227 793.9 719 59.1
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.3e-227 793.5 738 59.3
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.3e-227 793.5 746 58.8
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.8e-227 793.1 709 58.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.3e-227 792.7 723 59.8
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 3.9e-227 792.0 731 59.2
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.1e-227 791.6 712 60.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.7e-227 791.2 730 58.8
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 9.6e-226 787.3 730 59.9
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.3e-225 786.9 727 58.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.1e-225 786.2 714 59.8
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 4.8e-225 785.0 745 56.2
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 5.3e-224 781.6 711 60.5
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.5e-223 780.0 727 58.3
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.6e-223 779.2 724 59.0
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 8.4e-222 774.2 751 57.0
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.9e-220 767.7 727 57.9
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 7.9e-220 767.7 751 56.3
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.8e-219 766.5 727 57.9
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.8e-219 766.5 731 58.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.3e-218 762.3 703 58.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 7.4e-218 761.1 751 56.1
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.7e-217 758.8 709 57.7
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 4.8e-217 758.4 730 57.1
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 6.2e-217 758.1 727 57.6
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.4e-216 756.1 735 56.1
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 3.1e-216 755.7 731 56.8
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.0e-216 755.4 720 57.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 9.0e-216 754.2 709 56.3
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.4e-215 752.3 730 57.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.3e-214 750.4 731 56.8
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.9e-214 748.4 723 56.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 6.5e-214 748.0 731 56.1
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 9.3e-213 744.2 709 59.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.1e-212 743.0 713 55.1
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 6.7e-211 738.0 729 55.8
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 8.7e-211 737.6 752 55.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 4.3e-210 735.3 716 57.0
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 5.7e-210 734.9 752 55.3
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.8e-209 731.9 752 55.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 6.9e-208 728.0 770 52.9
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.0e-206 724.2 732 55.3
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.7e-206 723.4 730 55.2
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 5.5e-205 718.4 728 54.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.6e-204 716.8 729 54.9
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.1e-202 710.7 710 53.9
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 1.9e-202 709.9 751 54.1
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 5.7e-202 708.4 709 54.2
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.4e-200 703.7 673 56.5
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.9e-199 698.4 713 53.7
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 5.0e-198 695.3 722 54.2
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.9e-197 693.3 739 52.9
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 9.4e-197 691.0 673 54.5
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.6e-196 690.3 645 59.2
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 3.6e-196 689.1 729 52.7
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.0e-195 687.6 743 51.5
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 2.6e-194 682.9 637 59.8
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 5.7e-194 681.8 736 52.3
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.2e-193 679.9 748 51.9
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 3.7e-193 679.1 735 52.2
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.8e-192 676.8 744 52.0
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 2.4e-192 676.4 742 52.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 3.1e-192 676.0 742 51.3
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 5.3e-192 675.2 756 51.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 7.0e-192 674.9 734 51.5
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.5e-191 673.7 735 51.4
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.0e-191 673.3 769 50.1
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 6.5e-190 668.3 731 51.3
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-188 664.1 731 50.9
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.1e-188 663.3 715 52.4
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.1e-188 663.3 722 51.4
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 3.6e-188 662.5 731 51.8
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.3e-186 656.0 633 55.6
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 9.7e-186 654.4 656 55.6
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 2.8e-185 652.9 628 57.6
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.2e-183 647.5 778 50.4
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-183 647.1 731 50.8
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 2.6e-183 646.4 731 50.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 5.2e-171 605.5 651 53.1
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 2.0e-170 603.6 708 49.3
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.1e-168 597.8 712 47.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 5.4e-160 568.9 531 59.5
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-157 560.5 649 47.5
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.9e-153 546.6 773 44.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.1e-152 544.7 692 47.5
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 5.4e-144 515.8 662 46.1
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 8.9e-139 498.4 517 52.8
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.2e-135 488.0 711 42.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 5.6e-133 479.2 815 38.5
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 9.6e-125 451.8 744 41.7
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.6e-124 451.1 764 40.4
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.5e-119 433.3 761 38.1
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.0e-97 362.1 863 32.9
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 3.2e-96 357.1 545 40.7
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.5e-88 330.9 518 38.8
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.9e-80 304.7 484 39.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.0e-61 241.5 430 38.4
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 4.5e-58 230.3 653 28.9
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.0e-50 204.9 222 48.2
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.9e-48 198.4 228 49.1
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.4e-45 187.2 127 72.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 4.1e-43 180.6 293 40.3
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 9.2e-43 179.5 157 59.9
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.5e-42 177.6 216 49.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.1e-39 168.3 172 54.1
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 3.4e-37 161.0 98 80.6
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.7e-36 157.5 95 74.7
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.6e-32 143.7 95 70.5
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.2e-31 142.5 150 52.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 3.5e-26 124.4 143 46.9
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.6e-18 99.0 95 55.8
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 2.7e-18 98.2 251 37.5
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 9.6e-16 89.7 74 56.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.3e-09 69.3 414 25.8
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.9e-08 65.5 193 30.6
CAN.G696.6 Capsicum annuum HOM05D005219 ORTHO05D001154 1.6e-07 62.4 41 75.6
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 1.6e-07 62.4 177 32.8
Cc02_g13850 Coffea canephora HOM05D001439 ORTHO05D002726 2.1e-07 62.0 101 38.6
Nitab4.5_0004359g0020 Nicotiana tabacum HOM05D001439 ORTHO05D002726 6.2e-07 60.5 78 39.7
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 1.1e-06 59.7 162 29.6
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 1.1e-06 59.7 56 51.8
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 1.4e-06 59.3 74 37.8
Nitab4.5_0001955g0100 Nicotiana tabacum HOM05D001439 ORTHO05D002726 1.4e-06 59.3 78 38.5
CAN.G529.57 Capsicum annuum HOM05D001439 ORTHO05D002726 1.8e-06 58.9 80 40.0
THA.LOC104812616 Tarenaya hassleriana HOM05D001439 ORTHO05D002726 1.8e-06 58.9 98 39.8
SGA_v2.0_scaffold22G09664 Striga asiatica HOM05D001439 ORTHO05D002726 2.4e-06 58.5 56 48.2
Atru.chr6.2869 Acer truncatum HOM05D001439 ORTHO05D002726 3.1e-06 58.2 81 39.5
Hma1.2p1_0558F.1_g178470 Hydrangea macrophylla HOM05D001439 ORTHO05D002726 4.0e-06 57.8 77 44.2
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 4.0e-06 57.8 56 48.2
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 5.3e-06 57.4 149 32.2
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 5.3e-06 57.4 73 43.8
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 6.9e-06 57.0 149 32.2
Potri.007G135500 Populus trichocarpa HOM05D001439 ORTHO05D002726 6.9e-06 57.0 111 33.3
Solyc07g053610.3 Solanum lycopersicum HOM05D001439 ORTHO05D002726 6.9e-06 57.0 79 41.8
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 6.9e-06 57.0 79 41.8
CAN.G209.1 Capsicum annuum HOM05D001439 ORTHO05D002726 9.0e-06 56.6 79 43.0
MELO3C007260.2 Cucumis melo HOM05D001439 ORTHO05D002726 9.0e-06 56.6 63 44.4
Migut.M01107 Erythranthe guttata HOM05D001439 ORTHO05D002726 9.0e-06 56.6 63 41.3


User provided reference genes

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