Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.8e-292 1008.4 491 100.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.3e-292 1006.9 491 99.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.1e-242 840.9 497 85.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 3.2e-228 795.0 491 79.8
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.7e-227 792.0 491 79.0
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 7.1e-220 767.3 559 71.2
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.9e-213 745.3 491 73.5
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 9.6e-201 703.7 494 71.1
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.1e-199 700.3 491 71.1
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.8e-199 699.5 491 68.6
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.8e-199 699.5 491 69.2
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.8e-198 694.5 562 64.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 4.9e-197 691.4 491 68.2
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 9.3e-196 687.2 503 67.0
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 8.7e-194 680.6 502 66.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.4e-193 677.6 492 70.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.6e-192 676.4 497 70.4
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.4e-191 672.5 491 68.4
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.4e-190 668.7 494 68.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 5.9e-190 667.9 495 68.5
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.9e-190 667.9 494 67.6
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 5.0e-189 664.8 494 67.2
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.5e-188 662.5 492 67.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 4.6e-187 658.3 503 66.6
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.4e-186 656.8 495 67.1
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.3e-186 656.0 491 67.0
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.3e-186 656.0 493 66.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.5e-185 652.5 493 65.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 9.7e-185 650.6 491 66.2
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-183 646.7 491 65.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.8e-183 646.4 493 65.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.4e-183 646.0 491 64.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.2e-181 639.4 477 67.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.9e-181 639.0 475 68.4
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 8.5e-181 637.5 478 67.8
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.5e-180 636.0 475 66.7
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.6e-179 633.3 497 64.8
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.0e-178 629.0 495 64.0
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 5.1e-178 628.2 492 63.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.1e-177 627.1 491 63.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 9.7e-177 624.0 492 64.0
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 6.3e-176 621.3 492 63.4
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.1e-175 619.0 470 68.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 5.3e-175 618.2 491 62.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.5e-174 616.7 493 63.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.5e-174 616.7 493 63.3
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.2e-173 612.8 486 64.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.8e-173 612.1 444 67.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-172 609.8 401 73.8
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.5e-172 609.4 492 62.0
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-170 604.0 492 61.8
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.0e-170 604.0 463 65.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 5.2e-170 601.7 463 65.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.7e-168 596.7 743 45.8
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.7e-168 595.5 500 61.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.4e-167 593.6 401 71.6
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 5.3e-167 591.7 460 63.7
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.2e-166 590.5 448 65.8
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-165 587.0 460 62.4
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-165 586.3 511 60.1
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 3.8e-165 585.5 522 60.2
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 3.8e-165 585.5 488 61.5
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 6.5e-165 584.7 404 70.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.5e-164 583.6 492 61.8
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.5e-164 583.6 406 70.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.7e-163 578.6 522 57.9
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.1e-163 578.2 462 62.3
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.8e-162 576.6 401 69.8
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.0e-162 575.9 485 61.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.2e-162 575.1 501 58.7
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.8e-162 574.7 527 59.4
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.8e-162 574.7 485 61.0
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-160 570.5 492 60.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.7e-160 570.1 425 66.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.8e-160 569.3 408 68.6
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 6.3e-160 568.2 492 60.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.3e-160 567.8 520 59.0
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.4e-159 566.2 408 67.9
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.7e-157 560.1 467 59.3
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 6.5e-157 558.1 400 68.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.5e-157 557.8 456 62.3
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.2e-156 555.8 414 67.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-155 553.9 458 59.6
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.8e-154 550.1 559 56.0
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.0e-154 549.3 514 57.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 5.2e-154 548.5 475 58.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.0e-153 546.6 468 61.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.4e-153 545.8 406 66.5
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.7e-152 543.5 458 59.0
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.8e-152 542.7 455 61.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.7e-152 542.3 402 68.4
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.7e-152 542.3 417 66.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.4e-151 539.7 319 82.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 7.0e-151 538.1 408 66.2
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.9e-150 535.0 453 62.7
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.9e-149 532.7 397 65.5
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.5e-148 529.6 493 56.2
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.5e-148 528.5 492 56.1
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 7.2e-148 528.1 452 61.7
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.6e-147 526.9 492 56.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.7e-147 525.4 497 55.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.1e-147 525.0 463 59.0
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.0e-146 522.7 419 61.1
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 4.0e-146 522.3 431 61.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.5e-145 520.4 366 69.9
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.0e-145 520.0 406 60.8
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 9.8e-145 517.7 431 61.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.3e-144 515.0 431 60.8
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 6.3e-144 515.0 477 57.4
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 6.3e-144 515.0 466 57.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-143 513.8 418 60.3
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.8e-143 513.5 406 61.8
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.4e-143 513.1 408 63.2
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.2e-143 512.7 396 63.1
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.1e-143 512.3 431 61.3
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 5.4e-143 511.9 444 57.9
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-143 511.5 635 47.9
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 9.2e-143 511.1 420 60.2
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 9.2e-143 511.1 420 60.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.7e-142 509.6 386 62.7
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.5e-142 509.2 382 64.7
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 5.9e-142 508.4 368 67.7
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 7.8e-142 508.1 429 62.0
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.9e-141 505.8 406 60.6
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 3.3e-140 502.7 459 55.3
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 5.6e-140 501.9 417 60.7
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.2e-139 500.7 400 62.0
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.6e-139 499.2 418 59.6
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 4.7e-139 498.8 421 59.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 4.7e-139 498.8 484 56.0
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.1e-138 496.1 458 55.5
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.1e-138 496.1 458 55.5
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.1e-138 496.1 458 55.5
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 6.8e-138 495.0 419 59.2
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-137 493.8 478 54.8
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.6e-137 493.0 478 54.8
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.2e-135 486.1 383 61.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 5.0e-133 478.8 375 63.7
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.5e-132 477.2 407 60.0
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.9e-132 476.9 457 55.4
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.0e-125 454.5 404 55.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.1e-125 452.2 377 61.5
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.9e-119 433.7 311 66.6
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.8e-115 419.9 405 51.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.1e-114 416.4 404 50.2
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.1e-107 393.7 373 53.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.5e-102 376.3 227 83.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.6e-99 366.3 222 79.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 6.9e-98 362.1 354 56.2
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.4e-95 354.4 268 67.2
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 7.9e-86 322.0 278 60.8
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.2e-80 303.9 202 71.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.7e-77 292.0 417 47.5
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-72 276.9 198 65.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.5e-68 263.8 238 57.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.9e-61 240.0 311 42.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.7e-56 224.6 305 43.6
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 6.5e-48 196.1 439 32.8
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-38 165.2 119 71.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-35 154.8 138 57.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.9e-35 153.3 140 59.3
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.4e-34 149.8 267 39.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.3e-32 144.4 153 50.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 8.0e-30 136.0 286 31.1
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.0e-29 135.6 118 55.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.9e-27 126.7 607 23.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.8e-26 124.8 101 64.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-20 104.8 134 49.3
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.4e-20 104.0 237 35.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 4.7e-14 83.6 115 46.1
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.2e-11 74.7 47 72.3
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.3e-11 72.8 48 62.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.2e-10 70.9 328 24.1
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 3.6e-06 57.4 42 59.5


User provided reference genes

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