Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.6e-40 166.8 88 100.0
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-27 126.3 89 76.4
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.6e-27 124.0 83 79.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.6e-27 124.0 83 79.5
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.6e-27 123.2 85 78.8
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.3e-26 122.9 81 80.2
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 3.1e-25 118.2 83 77.1
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.0e-25 117.9 81 76.5
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 4.0e-25 117.9 82 75.6
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.3e-25 117.5 81 75.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 6.9e-25 117.1 83 75.9
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.5e-24 115.9 83 74.7
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 2.0e-24 115.5 80 76.2
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 3.4e-24 114.8 83 74.7
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 3.4e-24 114.8 93 68.8
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 5.8e-24 114.0 83 73.5
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.3e-23 112.8 83 71.1
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 1.3e-23 112.8 83 71.1
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.3e-23 112.8 83 72.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.7e-23 112.5 83 72.3
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.7e-23 112.5 83 72.3
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.2e-23 112.1 83 73.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.2e-23 112.1 83 73.5
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 4.9e-23 110.9 83 72.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 4.9e-23 110.9 83 71.1
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 8.4e-23 110.2 83 71.1
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 8.4e-23 110.2 80 72.5
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.1e-22 109.8 83 69.9
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.1e-22 109.8 80 71.2
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.4e-22 109.4 83 67.5
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.9e-22 109.0 87 69.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.9e-22 109.0 80 71.2
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.9e-22 109.0 83 68.7
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 2.5e-22 108.6 79 69.6
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.2e-22 108.2 81 70.4
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 3.2e-22 108.2 83 71.1
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 4.2e-22 107.8 83 71.1
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 5.5e-22 107.5 83 71.1
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 5.5e-22 107.5 83 69.9
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.1e-22 107.1 83 71.1
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 7.1e-22 107.1 81 70.4
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 7.1e-22 107.1 81 69.1
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.2e-21 106.3 83 68.7
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.2e-21 106.3 81 70.4
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 2.1e-21 105.5 83 69.9
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.1e-21 105.5 83 69.9
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 2.1e-21 105.5 83 62.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.7e-21 105.1 83 71.1
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.7e-21 105.1 83 71.1
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.7e-21 105.1 83 68.7
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.7e-21 105.1 83 68.7
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 4.6e-21 104.4 83 66.3
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 4.6e-21 104.4 81 69.1
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.1e-21 104.0 87 65.5
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 6.1e-21 104.0 79 72.2
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 7.9e-21 103.6 78 71.8
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 7.9e-21 103.6 79 72.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.0e-20 103.2 81 66.7
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.0e-20 103.2 82 68.3
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 1.0e-20 103.2 81 67.9
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.3e-20 102.8 78 69.2
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.3e-20 102.8 83 66.3
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.3e-20 102.8 83 66.3
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.3e-20 102.8 79 67.1
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.3e-20 102.8 73 75.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.8e-20 102.4 79 70.9
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.3e-20 102.1 87 64.4
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.3e-20 102.1 82 65.9
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.3e-20 102.1 78 67.9
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 3.0e-20 101.7 83 66.3
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 3.0e-20 101.7 85 67.1
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 3.9e-20 101.3 82 67.1
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 3.9e-20 101.3 83 65.1
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 3.9e-20 101.3 85 64.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 3.9e-20 101.3 83 65.1
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.1e-20 100.9 83 67.5
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 5.1e-20 100.9 83 65.1
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 5.1e-20 100.9 83 65.1
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 6.7e-20 100.5 81 66.7
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 6.7e-20 100.5 77 68.8
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 6.7e-20 100.5 79 69.6
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 6.7e-20 100.5 79 69.6
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 8.7e-20 100.1 88 67.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 8.7e-20 100.1 79 69.6
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.1e-19 99.8 81 65.4
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.5e-19 99.4 83 65.1
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.5e-19 99.4 77 71.4
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 4.3e-19 97.8 77 66.2
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 7.4e-19 97.1 83 62.7
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 7.4e-19 97.1 72 69.4
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 9.7e-19 96.7 75 68.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 9.7e-19 96.7 83 63.9
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 9.7e-19 96.7 85 61.2
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 1.3e-18 96.3 77 63.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.3e-18 96.3 81 67.9
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.6e-18 95.9 83 60.2
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.6e-18 95.9 79 65.8
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 4.8e-18 94.4 80 61.2
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 6.3e-18 94.0 83 62.7
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 6.3e-18 94.0 80 63.8
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 6.3e-18 94.0 78 64.1
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 8.2e-18 93.6 74 66.2
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.1e-17 93.2 80 62.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 1.8e-17 92.4 80 61.2
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 1.8e-17 92.4 80 62.5
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.8e-17 92.4 74 64.9
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.1e-17 91.7 80 62.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 4.1e-17 91.3 74 66.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 4.1e-17 91.3 74 64.9
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 4.1e-17 91.3 80 61.2
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 5.3e-17 90.9 74 63.5
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 5.3e-17 90.9 74 63.5
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 5.3e-17 90.9 74 63.5
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 6.9e-17 90.5 78 64.1
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.9e-17 90.5 74 63.5
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.9e-17 90.5 74 63.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.2e-16 89.7 80 60.0
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.2e-16 89.7 80 60.0
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.2e-16 89.7 80 60.0
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.5e-16 89.4 74 62.2
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.6e-16 88.6 80 58.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.6e-16 88.6 80 58.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.6e-16 88.6 80 58.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.6e-16 88.6 80 58.8
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.7e-15 85.9 77 59.7
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.9e-15 85.1 77 59.7
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 8.5e-15 83.6 72 59.7
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 8.5e-15 83.6 72 59.7
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 8.5e-15 83.6 72 59.7
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 8.5e-15 83.6 80 55.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 9.4e-14 80.1 73 60.3
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.3e-12 75.5 73 57.5
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 8.8e-12 73.6 72 56.9
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.0e-11 72.4 73 50.7
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.7e-11 70.1 67 58.2
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 9.7e-11 70.1 67 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.2e-10 68.9 78 51.3
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 3.7e-10 68.2 51 72.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 6.3e-10 67.4 73 49.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 8.2e-10 67.0 75 52.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.2e-08 63.2 43 67.4
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.2e-07 58.9 45 68.9
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.1e-06 56.6 53 56.6


User provided reference genes

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