Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 1.3e-203 713.0 394 100.0
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 1.0e-184 650.2 394 91.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.3e-184 649.8 394 91.6
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.2e-180 636.7 394 89.1
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 6.8e-173 610.9 394 85.3
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 2.2e-171 605.9 394 85.5
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.4e-170 603.2 394 84.8
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 7.1e-170 600.9 394 84.8
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.1e-169 599.4 394 84.5
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.7e-169 599.0 394 84.5
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 6.0e-169 597.8 394 84.3
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 7.8e-169 597.4 394 83.5
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.0e-168 597.0 394 85.0
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-168 596.7 394 83.5
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.3e-168 596.7 394 83.5
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.3e-168 595.9 394 82.0
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 3.0e-168 595.5 438 77.9
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 3.9e-168 595.1 394 83.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 3.9e-168 595.1 394 82.2
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 3.9e-168 595.1 394 84.3
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 5.1e-168 594.7 394 83.2
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 6.6e-168 594.3 394 83.5
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.1e-167 593.6 394 82.5
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.9e-167 592.8 394 82.7
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.9e-167 592.8 394 82.7
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.2e-166 590.1 394 82.5
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 1.6e-166 589.7 394 81.0
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-166 589.3 394 82.2
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 8.1e-166 587.4 394 82.7
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 82.2
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 1.8e-165 586.3 394 82.2
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.3e-165 585.9 394 82.0
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 3.1e-165 585.5 395 82.8
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 5.2e-165 584.7 394 82.2
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 6.8e-165 584.3 404 81.9
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 6.8e-165 584.3 410 80.7
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 8.9e-165 583.9 394 81.7
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.2e-164 583.6 395 82.5
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 82.0
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.5e-164 583.2 394 81.0
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.5e-164 583.2 392 81.1
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 4.4e-164 581.6 394 81.5
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 7.6e-164 580.9 394 81.0
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.3e-163 580.1 394 81.0
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 8.4e-163 577.4 394 79.4
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 9.2e-162 573.9 397 81.1
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.3e-160 570.1 417 77.9
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 5.1e-160 568.2 394 76.4
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 1.5e-159 566.6 394 76.4
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 5.6e-159 564.7 394 80.7
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 7.3e-159 564.3 370 84.6
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.6e-158 563.1 396 79.0
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.4e-157 560.1 394 76.9
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 2.4e-157 559.3 394 72.8
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.4e-157 559.3 394 79.4
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 6.9e-157 557.8 394 78.4
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 9.0e-157 557.4 394 72.6
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 3.4e-156 555.4 394 74.6
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 9.9e-156 553.9 394 72.3
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.7e-155 553.1 370 83.8
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.7e-155 553.1 426 75.6
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 3.8e-155 552.0 394 71.6
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 6.4e-155 551.2 394 71.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 1.9e-154 549.7 378 79.9
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 3.2e-154 548.9 399 71.9
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.2e-154 548.5 394 70.8
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.5e-151 540.0 394 72.1
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 4.3e-151 538.5 396 78.0
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.3e-150 537.0 394 77.9
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 2.1e-150 536.2 394 71.3
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 2.8e-150 535.8 399 77.9
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 4.8e-150 535.0 399 77.9
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 6.2e-150 534.6 394 70.8
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 68.8
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 1.1e-149 533.9 394 77.9
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.4e-149 533.5 395 77.5
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.8e-149 533.1 394 77.2
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 4.0e-149 531.9 394 70.6
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-149 531.9 394 70.6
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 6.9e-149 531.2 399 70.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 4.5e-148 528.5 395 74.9
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.1e-146 523.9 393 75.8
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 2.4e-146 522.7 399 73.2
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 7.1e-146 521.2 394 76.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 4.3e-143 511.9 378 70.1
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 5.6e-143 511.5 394 75.1
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.1e-142 509.6 409 72.4
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 7.6e-140 501.1 387 74.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.3e-139 500.4 402 72.9
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 2.2e-139 499.6 395 71.4
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 6.0e-137 491.5 358 72.9
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 1.8e-136 490.0 398 70.4
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.3e-136 489.6 394 74.6
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 5.3e-133 478.4 403 64.3
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.0e-131 474.2 394 64.0
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 2.6e-124 449.5 372 71.8
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 2.3e-120 436.4 394 59.1
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.4e-112 410.6 292 73.3
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 2.3e-112 409.8 382 60.5
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.3e-99 367.5 394 56.1
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 2.2e-99 366.7 287 75.6
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.5e-98 364.0 394 52.0
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 9.1e-93 344.7 328 66.8
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.9e-90 337.0 246 68.3
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 4.2e-90 335.9 399 48.1
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 4.2e-90 335.9 398 50.0
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 3.6e-81 306.2 378 50.3
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.8e-78 296.6 296 55.4
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.9e-75 286.6 302 55.0
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 3.0e-72 276.6 390 53.6
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 8.6e-67 258.5 182 69.8
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.5e-66 256.9 182 69.2
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.4e-63 246.5 292 51.0
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 9.9e-55 218.4 122 90.2
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 2.1e-52 210.7 542 31.7
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 3.5e-52 209.9 153 75.8
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.4e-48 198.0 165 62.4
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 4.4e-47 193.0 420 32.6
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 4.9e-46 189.5 205 53.7
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 2.7e-44 183.7 125 74.4
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.8e-40 171.0 407 33.4
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 7.6e-39 165.6 165 52.1
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 2.4e-37 160.6 393 30.3
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 3.5e-36 156.8 92 83.7
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 6.2e-33 146.0 137 56.2
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 3.8e-30 136.7 88 80.7
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 8.4e-30 135.6 71 83.1
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.1e-29 135.2 125 64.0
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 3.9e-27 126.7 81 79.0
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 1.9e-26 124.4 129 51.9
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 9.6e-26 122.1 88 69.3
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 3.7e-25 120.2 104 59.6
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 8.1e-25 119.0 150 44.0
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.2e-23 115.2 148 41.2
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 3.4e-23 113.6 130 63.8
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 3.9e-19 100.1 50 88.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.6e-17 94.7 80 66.2
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 7.6e-15 85.9 121 43.8
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.3e-14 85.1 51 82.4
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.4e-13 81.6 46 84.8
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.9e-13 81.3 48 66.7
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 7.1e-13 79.3 44 88.6
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 2.3e-11 74.3 65 58.5
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.9e-10 71.2 77 46.8
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.3e-10 70.1 38 89.5
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 5.7e-10 69.7 35 97.1
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 3.4e-07 60.5 50 64.0


User provided reference genes

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