Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.1e-66 256.5 130 100.0
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 5.2e-53 211.1 130 79.2
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.2e-52 209.9 127 79.5
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 5.7e-52 207.6 146 72.6
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 2.4e-50 202.2 124 80.6
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 3.1e-50 201.8 124 76.6
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 3.1e-50 201.8 126 77.8
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 5.4e-50 201.1 124 75.8
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 7.8e-49 197.2 125 74.4
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 8.6e-48 193.7 100 100.0
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 8.6e-48 193.7 127 70.1
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 1.5e-47 193.0 127 70.9
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 1.5e-47 193.0 121 75.2
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.9e-47 192.6 128 75.0
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 1.9e-47 192.6 123 73.2
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 4.3e-47 191.4 126 69.8
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 9.5e-47 190.3 122 75.4
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 1.2e-46 189.9 120 75.0
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.2e-46 189.9 126 69.8
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 1.6e-46 189.5 126 67.5
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 2.8e-46 188.7 124 68.5
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 3.6e-46 188.3 120 74.2
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 4.7e-46 188.0 127 70.1
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.4e-45 186.4 116 78.4
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 1.4e-45 186.4 122 72.1
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 1.8e-45 186.0 124 71.0
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 1.8e-45 186.0 128 68.8
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 3.1e-45 185.3 124 67.7
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 5.2e-45 184.5 122 71.3
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 5.2e-45 184.5 121 74.4
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 5.2e-45 184.5 124 66.9
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 6.8e-45 184.1 126 67.5
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 6.8e-45 184.1 127 66.1
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 1.5e-44 183.0 121 73.6
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 2.0e-44 182.6 122 71.3
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 4.4e-44 181.4 122 68.9
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 5.8e-44 181.0 124 70.2
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 7.5e-44 180.6 122 70.5
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 7.5e-44 180.6 126 67.5
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 9.8e-44 180.3 122 73.0
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 2.2e-43 179.1 122 69.7
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 2.9e-43 178.7 130 63.8
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.9e-43 178.7 122 69.7
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 2.9e-43 178.7 122 68.0
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 2.9e-43 178.7 126 66.7
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 8.3e-43 177.2 121 70.2
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-42 176.8 124 66.9
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.4e-42 176.4 124 66.9
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.4e-42 176.4 124 66.9
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.4e-42 176.4 121 69.4
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 1.9e-42 176.0 122 65.6
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.9e-42 176.0 124 63.7
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 2.4e-42 175.6 124 66.1
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 2.4e-42 175.6 121 69.4
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 4.1e-42 174.9 124 67.7
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 5.4e-42 174.5 124 65.3
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 7.0e-42 174.1 124 65.3
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 9.2e-42 173.7 122 66.4
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 1.2e-41 173.3 124 65.3
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.2e-41 173.3 126 65.9
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 2.0e-41 172.6 121 67.8
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 2.7e-41 172.2 120 66.7
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 2.7e-41 172.2 120 66.7
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 2.7e-41 172.2 120 66.7
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 3.5e-41 171.8 121 66.9
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 3.5e-41 171.8 120 66.7
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 4.6e-41 171.4 120 68.3
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 4.6e-41 171.4 121 66.1
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 4.6e-41 171.4 120 66.7
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 6.0e-41 171.0 122 62.3
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 6.0e-41 171.0 127 62.2
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 2.3e-40 169.1 124 63.7
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 3.0e-40 168.7 121 67.8
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 3.9e-40 168.3 121 62.8
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 3.9e-40 168.3 122 64.8
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 6.6e-40 167.5 120 65.0
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 1.5e-39 166.4 128 63.3
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 2.5e-39 165.6 126 61.1
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 4.3e-39 164.9 120 63.3
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 5.6e-39 164.5 123 63.4
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 1.6e-38 162.9 120 61.7
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 4.7e-38 161.4 124 60.5
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 1.1e-37 160.2 122 61.5
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.1e-37 160.2 123 61.8
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.1e-37 160.2 107 70.1
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 5.2e-37 157.9 107 69.2
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 1.5e-36 156.4 104 74.0
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.5e-36 156.4 151 55.0
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 2.6e-36 155.6 96 80.2
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 3.4e-36 155.2 98 75.5
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 5.8e-36 154.5 130 58.5
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 7.5e-36 154.1 122 59.0
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 9.8e-36 153.7 164 50.6
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.4e-34 149.1 171 47.4
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 7.0e-34 147.5 131 59.5
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 6.0e-33 144.4 97 73.2
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 1.3e-32 143.3 97 68.0
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 3.0e-32 142.1 94 72.3
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 5.1e-32 141.4 120 52.5
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 1.6e-30 136.3 92 72.8
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 1.1e-29 133.7 122 50.8
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 1.8e-29 132.9 126 47.6
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 2.3e-29 132.5 103 58.3
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 3.1e-29 132.1 96 68.8
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 5.8e-28 127.9 97 64.9
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.9e-27 124.8 96 60.4
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-26 122.9 93 64.5
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 4.1e-26 121.7 96 58.3
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.2e-25 120.2 96 57.3
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 1.6e-25 119.8 92 66.3
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 4.3e-23 111.7 90 62.2
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 4.0e-21 105.1 106 43.4
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 8.9e-21 104.0 102 50.0
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 2.9e-19 99.0 126 43.7
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 3.8e-19 98.6 74 64.9
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 8.4e-19 97.4 71 66.2
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 8.4e-19 97.4 90 56.7
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 7.1e-18 94.4 94 51.1
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 1.4e-13 80.1 124 36.3
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 4.4e-12 75.1 53 64.2
MCO04G004 Micromonas commoda HOM05D002376 ORTHO05D008821 4.2e-10 68.6 108 29.6


User provided reference genes

Program Settings