Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 0.0e+00 1078.2 549 100.0
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.3e-246 856.3 583 78.7
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 4.5e-231 804.7 604 71.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 6.1e-228 794.3 584 72.6
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 2.0e-218 762.7 576 72.0
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.4e-216 756.5 586 72.4
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.0e-214 750.4 592 68.8
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.9e-211 738.4 476 79.0
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 9.7e-210 733.8 610 64.9
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 9.7e-210 733.8 581 69.5
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.7e-209 733.0 600 64.5
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 3.7e-209 731.9 581 68.3
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 2.4e-208 729.2 594 67.7
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 1.6e-207 726.5 581 68.2
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.3e-206 723.4 600 64.5
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.3e-206 723.4 601 65.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.0e-206 721.5 631 64.2
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 1.1e-205 720.3 602 64.8
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 9.4e-205 717.2 592 65.5
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 6.1e-204 714.5 583 67.2
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 6.1e-204 714.5 583 65.5
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.4e-203 713.4 600 65.3
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.0e-203 712.2 612 63.9
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 4.0e-203 711.8 600 64.3
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.7e-203 711.1 600 65.2
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.6e-202 709.1 569 67.0
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 3.3e-202 708.8 581 67.5
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 1.7e-201 706.4 587 66.8
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 2.2e-201 706.1 586 65.2
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 4.8e-201 704.9 577 68.1
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.8e-200 703.0 498 75.9
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.8e-200 703.0 572 66.4
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.8e-200 703.0 616 63.0
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.4e-200 702.6 599 63.6
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 3.1e-200 702.2 599 63.8
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.1e-200 700.7 572 66.3
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.2e-199 700.3 594 65.0
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.0e-199 699.5 570 65.4
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.3e-198 696.8 599 63.1
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 2.9e-198 695.7 587 67.0
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 6.5e-198 694.5 608 63.0
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 8.5e-198 694.1 592 65.0
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 4.2e-197 691.8 600 65.5
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 7.2e-197 691.0 603 64.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.1e-196 689.5 599 63.4
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.6e-196 688.7 628 62.6
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.7e-196 688.3 584 64.0
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 8.0e-196 687.6 580 65.7
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 3.0e-195 685.6 603 64.0
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.0e-195 685.3 599 63.1
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 6.8e-195 684.5 602 63.8
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 8.8e-195 684.1 608 61.5
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 8.8e-195 684.1 608 61.2
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 5.7e-194 681.4 574 63.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 2.2e-193 679.5 594 60.8
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 3.7e-193 678.7 627 59.2
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 3.7e-193 678.7 574 66.0
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.1e-192 677.2 596 60.7
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.1e-192 675.2 542 65.1
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 5.4e-192 674.9 598 63.5
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 9.1e-192 674.1 657 59.5
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.6e-191 673.3 607 61.0
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.6e-191 673.3 608 60.0
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.0e-191 672.9 603 61.9
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 5.9e-191 671.4 589 63.2
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.0e-190 670.6 594 59.8
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.7e-190 669.8 606 61.4
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 2.3e-190 669.5 577 63.6
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.1e-189 667.2 586 61.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.5e-189 666.8 645 57.5
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.3e-189 665.6 598 62.9
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 9.5e-189 664.1 596 63.3
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 1.2e-188 663.7 578 61.9
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 4.7e-188 661.8 584 62.0
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 6.1e-188 661.4 592 59.8
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.3e-187 659.4 578 62.5
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.0e-187 659.1 570 62.1
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 5.2e-187 658.3 580 62.1
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 7.5e-186 654.4 605 61.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 9.8e-186 654.1 595 61.2
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.7e-185 653.3 600 61.2
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.8e-185 652.5 590 60.7
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 6.3e-185 651.4 608 60.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 8.3e-185 651.0 607 60.5
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 1.4e-184 650.2 597 60.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 3.1e-184 649.0 596 61.9
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 3.1e-184 649.0 605 60.8
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.6e-183 646.7 534 66.9
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.6e-183 646.7 593 61.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 2.7e-183 646.0 644 59.0
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.7e-182 643.3 604 60.1
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 1.9e-181 639.8 595 59.7
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 2.5e-181 639.4 568 61.8
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 5.6e-181 638.3 611 60.4
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.5e-181 637.5 614 59.3
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 9.5e-181 637.5 585 61.5
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.0e-179 634.0 564 59.9
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-178 630.2 591 60.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.3e-177 627.1 539 62.9
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.9e-176 623.2 589 58.2
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 7.0e-176 621.3 603 58.0
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 4.6e-175 618.6 569 60.8
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.3e-174 617.1 590 57.6
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.7e-174 616.7 626 56.7
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 3.3e-173 612.5 565 59.5
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 8.0e-172 607.8 595 56.6
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 4.1e-168 595.5 588 56.0
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 7.0e-168 594.7 599 55.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 9.2e-168 594.3 591 55.5
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 3.5e-167 592.4 639 53.1
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 6.0e-167 591.7 582 56.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 7.8e-167 591.3 591 55.5
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 2.3e-166 589.7 597 54.9
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 6.6e-166 588.2 598 55.5
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 6.6e-166 588.2 639 52.9
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-165 586.6 589 56.2
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.3e-165 585.9 589 56.4
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.8e-164 582.8 596 55.4
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.4e-163 580.5 571 57.4
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.8e-163 580.1 593 53.8
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 6.8e-163 578.2 597 54.8
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 6.8e-163 578.2 468 66.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 1.5e-162 577.0 550 58.0
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.4e-162 575.9 531 60.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.9e-161 572.0 478 65.9
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 4.6e-159 565.5 590 54.4
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.6e-159 565.5 551 59.0
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 2.3e-158 563.1 573 56.0
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.0e-154 550.1 553 56.6
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 7.6e-154 548.1 585 54.0
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 6.4e-153 545.0 479 62.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.2e-151 540.8 574 52.8
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 2.3e-150 536.6 538 56.1
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 4.8e-140 502.3 559 51.9
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 9.0e-139 498.0 386 69.9
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 9.9e-138 494.6 526 51.1
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.2e-137 493.4 595 48.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.2e-135 487.6 338 74.6
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 4.6e-135 485.7 584 49.7
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.5e-130 470.7 407 61.2
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.1e-128 464.5 557 48.8
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 6.0e-127 458.8 532 50.2
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.0e-121 441.4 443 54.4
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 1.7e-113 414.1 395 57.7
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.7e-111 406.8 316 69.3
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.7e-103 380.2 338 62.7
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 3.0e-94 350.1 630 35.9
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 1.5e-85 321.2 363 52.6
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 2.0e-69 267.7 163 85.9
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 8.6e-65 252.3 272 55.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 3.9e-57 226.9 235 57.9
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.3e-49 201.8 138 77.5
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.6e-47 194.9 246 48.4
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 3.9e-33 147.1 399 30.6
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 3.6e-31 140.6 165 53.9
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.1e-26 124.8 530 24.0
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 2.5e-24 117.9 520 23.3
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.5e-21 108.6 120 49.2
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.8e-17 95.1 78 70.5
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 3.9e-17 94.0 135 45.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.4e-16 89.7 62 72.6
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 9.6e-16 89.4 87 57.5
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 9.6e-16 89.4 101 49.5
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 6.2e-15 86.7 58 65.5
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 4.0e-14 84.0 69 53.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.0e-12 79.3 103 45.6
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 1.7e-12 78.6 69 52.2
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.8e-09 68.6 134 38.8
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.8e-09 68.6 177 31.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 4.3e-08 63.9 35 85.7
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 1.3e-07 62.4 36 83.3
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 6.3e-07 60.1 247 27.1
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.1e-06 57.8 36 86.1
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 3.1e-06 57.8 60 56.7
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 6.9e-06 56.6 247 26.7


User provided reference genes

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