Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002822 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 1.6e-59 232.6 123 100.0
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 1.1e-47 193.4 108 89.8
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 2.4e-47 192.2 108 88.9
vmacro12772 Vaccinium macrocarpon HOM05D002593 ORTHO05D006476 8.4e-45 183.7 120 79.2
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 2.4e-44 182.2 108 82.4
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 7.1e-44 180.6 108 82.4
Dinv07259 Davidia involucrata HOM05D002593 ORTHO05D006476 1.2e-43 179.9 92 93.5
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 1.1e-41 173.3 91 90.1
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 1.1e-41 173.3 91 90.1
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 1.5e-41 172.9 91 90.1
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 1.9e-41 172.6 89 91.0
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 3.3e-41 171.8 89 91.0
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 3.3e-41 171.8 91 90.1
CiPaw.07G075900 Carya illinoinensis HOM05D002593 ORTHO05D006476 4.3e-41 171.4 92 89.1
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 5.6e-41 171.0 91 87.9
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 7.4e-41 170.6 92 87.0
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 9.6e-41 170.2 92 84.8
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 9.6e-41 170.2 91 90.1
Nitab4.5_0002512g0060 Nicotiana tabacum HOM05D002593 ORTHO05D006476 9.6e-41 170.2 88 92.0
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.3e-40 169.9 92 85.9
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 1.3e-40 169.9 91 89.0
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 1.3e-40 169.9 91 89.0
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 1.3e-40 169.9 91 90.1
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 1.6e-40 169.5 91 89.0
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 2.1e-40 169.1 91 86.8
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 2.1e-40 169.1 92 88.0
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 2.1e-40 169.1 92 85.9
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 2.1e-40 169.1 91 87.9
TAR381G0660 Trochodendron aralioides HOM05D002593 ORTHO05D006476 2.1e-40 169.1 91 87.9
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 2.8e-40 168.7 92 85.9
Haze_16323 Corylus avellana HOM05D002593 ORTHO05D006476 2.8e-40 168.7 90 90.0
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 2.8e-40 168.7 92 87.0
Hma1.2p1_0619F.1_g190380 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 2.8e-40 168.7 92 87.0
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 2.8e-40 168.7 92 85.9
Prupe.4G114800 Prunus persica HOM05D002593 ORTHO05D006476 2.8e-40 168.7 89 89.9
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 3.7e-40 168.3 92 87.0
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 3.7e-40 168.3 91 86.8
Cfa002121 Carpinus fangiana HOM05D002593 ORTHO05D006476 4.8e-40 167.9 88 92.0
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 4.8e-40 167.9 91 86.8
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 6.2e-40 167.5 107 77.6
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 6.2e-40 167.5 92 84.8
Sc06g0005350 Simmondsia chinensis HOM05D002593 ORTHO05D006476 6.2e-40 167.5 92 85.9
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 8.1e-40 167.2 91 86.8
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 8.1e-40 167.2 91 87.9
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 8.1e-40 167.2 91 86.8
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 8.1e-40 167.2 91 86.8
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 8.1e-40 167.2 92 87.0
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 8.1e-40 167.2 90 88.9
CARHR204290 Cardamine hirsuta HOM05D002593 ORTHO05D006476 1.1e-39 166.8 92 83.7
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 1.1e-39 166.8 92 85.9
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 1.4e-39 166.4 92 84.8
Eucgr.I00094 Eucalyptus grandis HOM05D002593 ORTHO05D006476 1.4e-39 166.4 92 87.0
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 1.4e-39 166.4 91 86.8
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 1.4e-39 166.4 92 84.8
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 2.4e-39 165.6 91 85.7
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 3.1e-39 165.2 91 84.6
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 3.1e-39 165.2 91 84.6
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 3.1e-39 165.2 90 85.6
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 4.0e-39 164.9 92 82.6
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 4.0e-39 164.9 92 82.6
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 6.9e-39 164.1 89 85.4
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 6.9e-39 164.1 91 83.5
ATR0584G276 Amborella trichopoda HOM05D002593 ORTHO05D006476 9.0e-39 163.7 91 81.3
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 9.0e-39 163.7 92 83.7
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 9.0e-39 163.7 92 83.7
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 9.0e-39 163.7 92 83.7
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 9.0e-39 163.7 91 84.6
PGSC0003DMG400012080 Solanum tuberosum HOM05D002593 ORTHO05D006476 9.0e-39 163.7 90 87.8
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 9.0e-39 163.7 91 85.7
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 82.6
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 81.5
Manes.12G083900 Manihot esculenta HOM05D002593 ORTHO05D006476 1.2e-38 163.3 91 85.7
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 1.2e-38 163.3 92 81.5
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 1.5e-38 162.9 92 81.5
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 2.0e-38 162.5 92 84.8
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 2.0e-38 162.5 92 81.5
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 2.6e-38 162.2 91 82.4
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 3.4e-38 161.8 92 80.4
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 4.5e-38 161.4 91 81.3
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 4.5e-38 161.4 92 81.5
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 7.6e-38 160.6 92 82.6
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 7.6e-38 160.6 92 80.4
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 9.9e-38 160.2 92 79.3
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 9.9e-38 160.2 91 81.3
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 9.9e-38 160.2 92 79.3
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 1.7e-37 159.5 92 80.4
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 2.2e-37 159.1 92 80.4
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 2.9e-37 158.7 91 80.2
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 2.9e-37 158.7 91 81.3
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 6.4e-37 157.5 92 78.3
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 8.4e-37 157.1 92 79.3
Glyma.06G158400 Glycine max HOM05D002593 ORTHO05D006476 1.1e-36 156.8 89 80.9
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 5.5e-36 154.5 92 78.3
Zm00001eb063890 Zea mays HOM05D002593 ORTHO05D006476 5.5e-36 154.5 91 78.0
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 7.1e-36 154.1 91 76.9
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 1.2e-35 153.3 91 75.8
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 1.6e-35 152.9 91 76.9
HPP92_025044 Vanilla planifolia HOM05D002593 ORTHO05D006476 2.7e-35 152.1 91 75.8
arahy.Tifrunner.gnm1.ann1.DM3640 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.0e-34 150.2 91 75.8
Actinidia20056 Actinidia chinensis HOM05D002593 ORTHO05D006476 8.7e-34 147.1 92 80.4
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 1.1e-33 146.7 92 76.1
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 1.5e-33 146.4 92 75.0
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 9.6e-33 143.7 92 73.9
SEGI_22974 Sequoiadendron giganteum HOM05D002593 ORTHO05D006476 9.6e-33 143.7 91 71.4
Eucgr.I00052 Eucalyptus grandis HOM05D002593 ORTHO05D006476 4.5e-30 134.8 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.116 Anthoceros agrestis HOM05D002593 ORTHO05D006476 5.1e-26 121.3 88 62.5
Pp3c16_9330 Physcomitrium patens HOM05D002593 ORTHO05D006476 2.5e-25 119.0 88 62.5
SMO230G0109 Selaginella moellendorffii HOM05D002593 ORTHO05D006476 1.5e-22 109.8 87 58.6
CDE02G1715 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 5.9e-22 107.8 56 89.3
Mapoly0148s0001 Marchantia polymorpha HOM05D002593 ORTHO05D006476 1.9e-20 102.8 87 55.2
CBR_g48801 Chara braunii HOM05D002593 ORTHO05D006476 7.9e-19 97.4 91 48.4
CDE08G0854 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 7.4e-09 64.3 36 72.2
Cc11_g02630 Coffea canephora HOM05D002593 ORTHO05D006476 7.0e-07 57.8 26 96.2
PRCOL_00005747 Prasinoderma coloniale HOM05D002593 ORTHO05D006476 1.5e-06 56.6 85 31.8
AagrBONN_evm.TU.Sc2ySwM_344.627 Anthoceros agrestis HOM05D015006 ORTHO05D015881 3.4e-06 55.5 64 39.1


User provided reference genes

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