Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.2e-51 205.3 102 100.0
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.2e-46 188.7 116 84.5
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 8.2e-46 186.8 116 83.6
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 8.2e-46 186.8 116 83.6
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 8.2e-46 186.8 116 83.6
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 8.2e-46 186.8 116 83.6
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 7.0e-45 183.7 116 82.8
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.6e-44 182.6 116 82.8
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 2.4e-21 105.5 63 77.8
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 9.2e-21 103.6 67 76.1
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 2.7e-20 102.1 64 79.7
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 3.5e-20 101.7 62 75.8
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 1.3e-19 99.8 62 74.2
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 8.6e-19 97.1 60 73.3
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 1.1e-18 96.7 67 68.7
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 1.9e-18 95.9 67 64.2
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 2.5e-18 95.5 64 65.6
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 4.3e-18 94.7 67 64.2
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 2.8e-17 92.0 58 67.2
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 3.6e-17 91.7 56 75.0
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 6.1e-17 90.9 64 64.1
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 8.0e-17 90.5 67 59.7
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 8.0e-17 90.5 57 71.9
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.4e-16 89.7 61 63.9
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 2.3e-16 89.0 67 62.7
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 3.0e-16 88.6 62 64.5
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 4.0e-16 88.2 59 69.5
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 6.8e-16 87.4 61 63.9
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 6.8e-16 87.4 63 71.4
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 6.8e-16 87.4 58 69.0
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 8.9e-16 87.0 62 64.5
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 8.9e-16 87.0 62 64.5
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 8.9e-16 87.0 67 58.2
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 1.2e-15 86.7 62 64.5
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 1.5e-15 86.3 59 67.8
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 2.6e-15 85.5 58 69.0
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 4.4e-15 84.7 62 62.9
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 4.4e-15 84.7 58 67.2
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 5.8e-15 84.3 57 71.9
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 5.8e-15 84.3 62 62.9
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 7.5e-15 84.0 61 68.9
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 9.8e-15 83.6 54 66.7
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 1.3e-14 83.2 55 70.9
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.7e-14 82.8 60 61.7
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 2.2e-14 82.4 53 71.7
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 2.9e-14 82.0 55 69.1
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 2.9e-14 82.0 60 61.7
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.9e-14 82.0 64 62.5
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.9e-14 82.0 58 67.2
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 3.7e-14 81.6 60 66.7
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 3.7e-14 81.6 58 67.2
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 4.9e-14 81.3 69 58.0
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 4.9e-14 81.3 67 52.2
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 8.3e-14 80.5 60 60.0
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 8.3e-14 80.5 60 60.0
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 8.3e-14 80.5 64 60.9
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.1e-13 80.1 62 61.3
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 1.1e-13 80.1 60 65.0
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 1.1e-13 80.1 62 62.9
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 1.8e-13 79.3 64 62.5
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 1.8e-13 79.3 64 62.5
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.8e-13 79.3 60 60.0
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 2.4e-13 79.0 64 60.9
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 2.4e-13 79.0 64 60.9
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 2.4e-13 79.0 64 59.4
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 3.2e-13 78.6 64 60.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 3.2e-13 78.6 62 64.5
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 3.2e-13 78.6 64 60.9
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.2e-13 78.6 55 67.3
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 3.2e-13 78.6 62 62.9
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 4.1e-13 78.2 64 59.4
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 4.1e-13 78.2 55 61.8
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 5.4e-13 77.8 60 63.3
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 5.4e-13 77.8 55 67.3
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 9.2e-13 77.0 64 59.4
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 9.2e-13 77.0 57 61.4
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 9.2e-13 77.0 59 57.6
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.2e-12 76.6 64 59.4
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 1.6e-12 76.3 60 61.7
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.7e-12 75.5 64 60.9
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 7.8e-12 73.9 62 58.1
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.0e-11 73.6 54 61.1
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 1.0e-11 73.6 64 54.7
Sopen01g052810 Solanum pennellii HOM05D004017 ORTHO05D004612 1.7e-11 72.8 84 50.0
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 5.0e-11 71.2 56 60.7
Solyc01g110640.2 Solanum lycopersicum HOM05D004017 ORTHO05D013629 6.6e-11 70.9 66 54.5
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 8.6e-11 70.5 48 70.8
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 1.1e-10 70.1 60 58.3
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.9e-10 69.3 64 53.1
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 5.6e-10 67.8 62 53.2
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 1.2e-09 66.6 62 54.8
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.6e-09 66.2 43 65.1
SHI29523 Sapria himalayana HOM05D004017 ORTHO05D004612 2.8e-09 65.5 51 58.8
Sopen02g027370 Solanum pennellii HOM05D004017 ORTHO05D004612 1.4e-08 63.2 50 60.0
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 1.4e-08 63.2 52 50.0
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 1.4e-08 63.2 52 50.0
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 4.0e-08 61.6 48 58.3
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 4.0e-08 61.6 55 49.1
CDE06G0086 Ceratophyllum demersum HOM05D004017 ORTHO05D004612 5.2e-08 61.2 55 54.5
Ah.03g142840 Amaranthus hybridus HOM05D004017 ORTHO05D004612 2.6e-07 58.9 62 43.5
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.6e-07 58.9 58 56.9
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 3.4e-07 58.5 58 55.2
Sopen02g033710 Solanum pennellii HOM05D004017 ORTHO05D004612 7.5e-07 57.4 45 55.6
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 9.8e-07 57.0 54 55.6


User provided reference genes

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