Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002678 Camellia sinensis var. sinensis HOM05D002843 ORTHO05D003086 4.2e-59 231.1 113 100.0
CSS0038701 Camellia sinensis var. sinensis HOM05D002843 ORTHO05D003086 1.2e-26 123.2 208 41.8
CSS0037305 Camellia sinensis var. sinensis HOM05D002843 ORTHO05D003086 3.6e-26 121.7 208 41.3
vmacro09803 Vaccinium macrocarpon HOM05D002843 ORTHO05D003086 5.7e-24 114.4 181 45.3
vmacro09600 Vaccinium macrocarpon HOM05D002843 ORTHO05D003086 7.5e-24 114.0 183 44.8
Dinv19649 Davidia involucrata HOM05D002843 ORTHO05D003086 1.7e-23 112.8 208 41.3
Dinv40904 Davidia involucrata HOM05D002843 ORTHO05D003086 1.4e-22 109.8 208 40.4
Lj8C182T18 Lonicera japonica HOM05D002843 ORTHO05D003086 1.8e-22 109.4 177 44.1
GSVIVG01014761001 Vitis vinifera HOM05D002843 ORTHO05D003086 2.4e-22 109.0 209 39.7
CSS0024416 Camellia sinensis var. sinensis HOM05D002843 ORTHO05D003086 7.0e-22 107.5 202 40.1
Actinidia03670 Actinidia chinensis HOM05D002843 ORTHO05D003086 1.6e-21 106.3 208 38.9
Oeu006272.1 Olea europaea HOM05D002843 ORTHO05D003086 5.9e-21 104.4 165 41.8
Rhsim04G0008300 Rhododendron simsii HOM05D002843 ORTHO05D003086 5.9e-21 104.4 200 41.0
Thecc.07G002700 Theobroma cacao HOM05D002843 ORTHO05D003086 7.8e-21 104.0 203 38.4
TAR626G0850 Trochodendron aralioides HOM05D002843 ORTHO05D003086 1.3e-20 103.2 208 37.0
Cfa016953 Carpinus fangiana HOM05D002843 ORTHO05D003086 1.7e-20 102.8 208 37.5
Haze_09909 Corylus avellana HOM05D002843 ORTHO05D003086 1.7e-20 102.8 208 37.5
Gohir.A01G095000 Gossypium hirsutum HOM05D002843 ORTHO05D003086 6.6e-20 100.9 203 36.0
COL.COLO4_07781 Corchorus olitorius HOM05D002843 ORTHO05D003086 8.6e-20 100.5 200 37.0
PSO675G3130 Papaver somniferum HOM05D002843 ORTHO05D003086 1.1e-19 100.1 208 35.6
Lalb_Chr05g0229021 Lupinus albus HOM05D002843 ORTHO05D003086 1.5e-19 99.8 201 36.8
Cpa.g.sc12.76 Carica papaya HOM05D002843 ORTHO05D003086 1.9e-19 99.4 205 37.1
Gorai.002G104000 Gossypium raimondii HOM05D002843 ORTHO05D003086 1.9e-19 99.4 203 36.0
MBI15_g26853_MAGBIO Magnolia biondii HOM05D002843 ORTHO05D003086 1.9e-19 99.4 207 35.7
Gohir.D01G079401 Gossypium hirsutum HOM05D002843 ORTHO05D003086 2.5e-19 99.0 204 35.8
Ciclev10009385m.g Citrus clementina HOM05D002843 ORTHO05D003086 5.6e-19 97.8 203 35.5
Glyma.16G095700 Glycine max HOM05D002843 ORTHO05D003086 7.3e-19 97.4 201 35.8
Atru.chr2.3887 Acer truncatum HOM05D002843 ORTHO05D003086 9.5e-19 97.1 194 38.1
PSO541G6435 Papaver somniferum HOM05D002843 ORTHO05D003086 9.5e-19 97.1 208 35.1
QL08p000713 Quercus lobata HOM05D002843 ORTHO05D003086 9.5e-19 97.1 205 36.1
Glyma.08G265200 Glycine max HOM05D002843 ORTHO05D003086 1.2e-18 96.7 201 35.8
Sabra16G0319700 Salix brachista HOM05D002843 ORTHO05D003086 1.2e-18 96.7 203 36.0
CiPaw.11G209900 Carya illinoinensis HOM05D002843 ORTHO05D003086 1.6e-18 96.3 205 37.1
Aqoxy4G02255 Aquilegia oxysepala HOM05D002843 ORTHO05D003086 2.8e-18 95.5 208 35.6
TWI38G1992 Tripterygium wilfordii HOM05D002843 ORTHO05D003086 2.8e-18 95.5 202 36.1
Duzib213G0303 Durio zibethinus HOM05D002843 ORTHO05D003086 3.6e-18 95.1 194 37.1
MD03G1041500 Malus domestica HOM05D002843 ORTHO05D003086 3.6e-18 95.1 202 35.6
VMungo0251G3218 Vigna mungo HOM05D002843 ORTHO05D003086 4.7e-18 94.7 201 36.3
EL10Ac4g07497 Beta vulgaris HOM05D002843 ORTHO05D003086 8.0e-18 94.0 202 35.6
FvH4_3g41720 Fragaria vesca HOM05D002843 ORTHO05D003086 8.0e-18 94.0 202 35.1
FAN11G0368 Fragaria x ananassa HOM05D002843 ORTHO05D003086 8.0e-18 94.0 202 35.1
Nn1g08295 Nelumbo nucifera HOM05D002843 ORTHO05D003086 8.0e-18 94.0 207 36.2
Potri.001G471100 Populus trichocarpa HOM05D002843 ORTHO05D003086 8.0e-18 94.0 200 36.0
arahy.Tifrunner.gnm1.ann1.Z602RZ Arachis hypogaea HOM05D002843 ORTHO05D003086 1.1e-17 93.6 199 35.2
Medtr8g070510 Medicago truncatula HOM05D002843 ORTHO05D003086 1.8e-17 92.8 201 35.3
RcHm_v2.0_Chr5g0074811 Rosa chinensis HOM05D002843 ORTHO05D003086 1.8e-17 92.8 202 34.7
MD11G1042400 Malus domestica HOM05D002843 ORTHO05D003086 2.3e-17 92.4 202 34.7
Os06g0609600 Oryza sativa ssp. japonica HOM05D002843 ORTHO05D003086 2.3e-17 92.4 201 35.3
TWI39G1132 Tripterygium wilfordii HOM05D002843 ORTHO05D003086 3.1e-17 92.0 199 36.2
arahy.Tifrunner.gnm1.ann1.LEYW5Q Arachis hypogaea HOM05D002843 ORTHO05D003086 4.0e-17 91.7 199 35.2
FAN21G3576 Fragaria x ananassa HOM05D002843 ORTHO05D003086 4.0e-17 91.7 202 35.1
PGR083G2889 Punica granatum HOM05D002843 ORTHO05D003086 4.0e-17 91.7 202 35.6
AL7G26470 Arabidopsis lyrata HOM05D002843 ORTHO05D003086 5.2e-17 91.3 206 32.5
Sp7g24410 Schrenkiella parvula HOM05D002843 ORTHO05D003086 5.2e-17 91.3 206 33.0
Gohir.A04G001500 Gossypium hirsutum HOM05D002843 ORTHO05D003086 8.9e-17 90.5 200 36.0
Oeu019687.1 Olea europaea HOM05D002843 ORTHO05D003086 8.9e-17 90.5 202 34.7
Prupe.6G033600 Prunus persica HOM05D002843 ORTHO05D003086 8.9e-17 90.5 202 34.7
Ca_22542_v3 Cicer arietinum L. HOM05D002843 ORTHO05D003086 1.2e-16 90.1 201 34.8
Phvul.003G275000 Phaseolus vulgaris HOM05D002843 ORTHO05D003086 1.2e-16 90.1 198 35.9
Migut.H01719 Erythranthe guttata HOM05D002843 ORTHO05D003086 1.5e-16 89.7 208 33.7
arahy.Tifrunner.gnm1.ann1.11ZMB3 Arachis hypogaea HOM05D002843 ORTHO05D003086 2.0e-16 89.4 199 34.2
Zm00001eb236060 Zea mays HOM05D002843 ORTHO05D003086 2.0e-16 89.4 204 31.9
BcaC06g32744 Brassica carinata HOM05D002843 ORTHO05D003086 2.6e-16 89.0 198 34.3
C07p55310 Brassica napus HOM05D002843 ORTHO05D003086 2.6e-16 89.0 198 34.3
BolC7t45983H Brassica oleracea HOM05D002843 ORTHO05D003086 2.6e-16 89.0 198 34.3
arahy.Tifrunner.gnm1.ann1.G81GNA Arachis hypogaea HOM05D002843 ORTHO05D003086 3.4e-16 88.6 199 34.2
Psat4g111520 Pisum sativum HOM05D002843 ORTHO05D003086 3.4e-16 88.6 200 35.0
Os02g0198200 Oryza sativa ssp. japonica HOM05D002843 ORTHO05D003086 4.4e-16 88.2 201 32.8
Gorai.009G454500 Gossypium raimondii HOM05D002843 ORTHO05D003086 5.8e-16 87.8 200 34.0
TPR.G6119 Trifolium pratense HOM05D002843 ORTHO05D003086 5.8e-16 87.8 201 33.8
Zm00001eb388550 Zea mays HOM05D002843 ORTHO05D003086 5.8e-16 87.8 201 33.8
MSTRG.7036 Avicennia marina HOM05D002843 ORTHO05D003086 1.3e-15 86.7 206 35.0
Lsat_1_v5_gn_7_116180 Lactuca sativa HOM05D002843 ORTHO05D003086 1.3e-15 86.7 203 33.5
Nitab4.5_0000611g0220 Nicotiana tabacum HOM05D002843 ORTHO05D003086 1.3e-15 86.7 205 33.2
CARHR234050 Cardamine hirsuta HOM05D002843 ORTHO05D003086 1.7e-15 86.3 198 32.8
ClCG10G004530 Citrullus lanatus HOM05D002843 ORTHO05D003086 1.7e-15 86.3 205 33.2
DCAR_017601 Daucus carota HOM05D002843 ORTHO05D003086 1.7e-15 86.3 208 33.7
DCAR_013762 Daucus carota HOM05D002843 ORTHO05D003086 2.2e-15 85.9 196 33.7
Lj1A899T33 Lonicera japonica HOM05D002843 ORTHO05D003086 2.2e-15 85.9 202 33.7
BcaC06g32742 Brassica carinata HOM05D002843 ORTHO05D003086 2.9e-15 85.5 196 33.7
Cc05_g15620 Coffea canephora HOM05D002843 ORTHO05D003086 2.9e-15 85.5 196 34.7
ECA236G4339 Erigeron canadensis HOM05D002843 ORTHO05D003086 2.9e-15 85.5 202 32.7
Nitab4.5_0001622g0090 Nicotiana tabacum HOM05D002843 ORTHO05D003086 2.9e-15 85.5 205 33.7
Aa31LG5G11820 Aethionema arabicum HOM05D002843 ORTHO05D003086 3.7e-15 85.1 200 32.0
A01p17720 Brassica napus HOM05D002843 ORTHO05D003086 3.7e-15 85.1 196 33.2
A03p56750 Brassica napus HOM05D002843 ORTHO05D003086 3.7e-15 85.1 194 34.0
C01p22390 Brassica napus HOM05D002843 ORTHO05D003086 3.7e-15 85.1 196 33.2
BolC1t02170H Brassica oleracea HOM05D002843 ORTHO05D003086 3.7e-15 85.1 196 33.2
BraA03t14743Z Brassica rapa HOM05D002843 ORTHO05D003086 3.7e-15 85.1 194 34.0
Lj4g0026437 Lotus japonicus HOM05D002843 ORTHO05D003086 3.7e-15 85.1 199 34.7
BcaC09g50712 Brassica carinata HOM05D002843 ORTHO05D003086 4.9e-15 84.7 196 33.2
BcaNung02416 Brassica carinata HOM05D002843 ORTHO05D003086 4.9e-15 84.7 196 33.2
CANSAT11G1848 Cannabis sativa HOM05D002843 ORTHO05D003086 6.4e-15 84.3 203 32.0
Peaxi162Scf00902g00036 Petunia axillaris HOM05D002843 ORTHO05D003086 6.4e-15 84.3 205 32.7
Manes.05G205300 Manihot esculenta HOM05D002843 ORTHO05D003086 8.3e-15 84.0 201 33.3
ATR0751G041 Amborella trichopoda HOM05D002843 ORTHO05D003086 1.1e-14 83.6 202 33.7
Carub.0007s1443 Capsella rubella HOM05D002843 ORTHO05D003086 1.1e-14 83.6 196 32.7
CAN.G492.57 Capsicum annuum HOM05D002843 ORTHO05D003086 1.4e-14 83.2 205 32.2
Thhalv10026168m.g Eutrema salsugineum HOM05D002843 ORTHO05D003086 1.4e-14 83.2 200 31.5
SGA_v2.0_scaffold11G05952 Striga asiatica HOM05D002843 ORTHO05D003086 1.4e-14 83.2 208 30.8
Zm00001eb205910 Zea mays HOM05D002843 ORTHO05D003086 1.4e-14 83.2 201 31.8
CsaV3_3G004350 Cucumis sativus L. HOM05D002843 ORTHO05D003086 2.4e-14 82.4 205 32.2
Solyc10g005750.3 Solanum lycopersicum HOM05D002843 ORTHO05D003086 2.4e-14 82.4 205 32.2
Sopen10g001720 Solanum pennellii HOM05D002843 ORTHO05D003086 2.4e-14 82.4 205 32.2
PGSC0003DMG400008692 Solanum tuberosum HOM05D002843 ORTHO05D003086 2.4e-14 82.4 205 32.2
Sed0021293 Sechium edule HOM05D002843 ORTHO05D003086 3.2e-14 82.0 202 33.2
SGA_v2.0_scaffold92G28178 Striga asiatica HOM05D002843 ORTHO05D003086 3.2e-14 82.0 198 31.8
HanXRQChr17g0558491 Helianthus annuus HOM05D002843 ORTHO05D003086 5.4e-14 81.3 198 33.3
BraA01t01727Z Brassica rapa HOM05D002843 ORTHO05D003086 7.0e-14 80.9 196 32.7
SalBow8G1291 Salvia bowleyana HOM05D002843 ORTHO05D003086 7.0e-14 80.9 200 32.5
Actinidia00824 Actinidia chinensis HOM05D002843 ORTHO05D003086 1.2e-13 80.1 46 84.8
ECA246G4996 Erigeron canadensis HOM05D002843 ORTHO05D003086 1.2e-13 80.1 197 33.0
Eucgr.F03649 Eucalyptus grandis HOM05D002843 ORTHO05D003086 2.7e-13 79.0 48 81.2
MELO3C014128.2 Cucumis melo HOM05D002843 ORTHO05D003086 3.5e-13 78.6 198 31.3
HanXRQChr05g0160151 Helianthus annuus HOM05D002843 ORTHO05D003086 3.5e-13 78.6 197 32.5
Hund22974 Selenicereus undatus HOM05D002843 ORTHO05D003086 7.8e-13 77.4 203 32.0
Gohir.D05G387900 Gossypium hirsutum HOM05D002843 ORTHO05D003086 5.0e-12 74.7 93 50.5
Lsat_1_v5_gn_4_51340 Lactuca sativa HOM05D002843 ORTHO05D003086 6.6e-12 74.3 196 31.6
AUR62017174 Chenopodium quinoa HOM05D002843 ORTHO05D003086 8.6e-12 73.9 211 30.3
AUR62035632 Chenopodium quinoa HOM05D002843 ORTHO05D003086 8.6e-12 73.9 208 30.8
Sc03g0011750 Simmondsia chinensis HOM05D002843 ORTHO05D003086 1.9e-11 72.8 45 75.6
AL678U10010 Arabidopsis lyrata HOM05D002843 ORTHO05D003086 7.3e-11 70.9 46 67.4
AT4G26470 Arabidopsis thaliana HOM05D002843 ORTHO05D003086 7.3e-11 70.9 46 67.4
CDE06G1963 Ceratophyllum demersum HOM05D002843 ORTHO05D003086 7.3e-11 70.9 202 29.2
MSTRG.13039 Avicennia marina HOM05D002843 ORTHO05D003086 2.1e-10 69.3 201 29.4
MSTRG.14517 Avicennia marina HOM05D002843 ORTHO05D003086 3.1e-09 65.5 200 29.0
FAN25G3162 Fragaria x ananassa HOM05D002843 ORTHO05D003086 6.8e-09 64.3 35 74.3
SMO232G0027 Selaginella moellendorffii HOM05D002843 ORTHO05D003086 1.7e-07 59.7 222 25.7
unitig_21.g20262 Utricularia gibba HOM05D002843 ORTHO05D003086 8.3e-07 57.4 35 68.6
AagrBONN_evm.TU.Sc2ySwM_344.3188 Anthoceros agrestis HOM05D002843 ORTHO05D003086 1.9e-06 56.2 211 25.1
HPP92_017861 Vanilla planifolia HOM05D002843 ORTHO05D003086 2.4e-06 55.8 35 68.6
Pp3c16_16010 Physcomitrium patens HOM05D002843 ORTHO05D003086 7.1e-06 54.3 40 55.0


User provided reference genes

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