Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-34 149.4 71 100.0
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.1e-23 111.3 91 68.1
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.0e-19 97.1 71 71.8
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.4e-12 75.9 58 67.2
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.9e-12 75.5 39 89.7
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 9.2e-12 73.2 37 91.9
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 9.2e-12 73.2 36 91.7
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 9.2e-12 73.2 36 91.7
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-11 72.0 36 91.7
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 86.1
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 2.7e-11 71.6 36 91.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 3.5e-11 71.2 36 88.9
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.5e-11 71.2 36 88.9
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 3.5e-11 71.2 36 88.9
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 3.5e-11 71.2 36 88.9
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 3.5e-11 71.2 36 88.9
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 86.1
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 88.9
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 88.9
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 88.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 88.9
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 88.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 4.6e-11 70.9 36 88.9
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.0e-11 70.5 36 88.9
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 7.8e-11 70.1 36 86.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 7.8e-11 70.1 36 88.9
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 7.8e-11 70.1 36 88.9
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 7.8e-11 70.1 36 86.1
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 86.1
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 86.1
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 86.1
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 86.1
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 83.3
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.0e-10 69.7 36 88.9
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 86.1
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 86.1
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.3e-10 69.3 37 83.8
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.3e-10 69.3 36 88.9
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.7e-10 68.9 36 86.1
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.7e-10 68.9 36 86.1
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.7e-10 68.9 37 81.1
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.7e-10 68.9 56 60.7
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 88.9
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 83.3
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 83.3
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.3e-10 68.6 36 86.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.3e-10 68.6 36 86.1
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 86.1
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 86.1
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 86.1
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 86.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 86.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 86.1
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.0e-10 68.2 36 83.3
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.0e-10 68.2 35 88.6
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 80.6
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 83.3
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 83.3
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 88.9
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 83.3
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 80.6
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.9e-10 67.8 55 60.0
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 80.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 3.9e-10 67.8 36 83.3
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.1e-10 67.4 39 79.5
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 5.1e-10 67.4 35 82.9
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 5.1e-10 67.4 35 82.9
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.1e-10 67.4 56 60.7
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 6.6e-10 67.0 36 86.1
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 8.6e-10 66.6 36 88.9
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-09 66.2 35 82.9
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.1e-09 66.2 36 80.6
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-09 66.2 36 77.8
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 1.1e-09 66.2 36 83.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 1.5e-09 65.9 34 88.2
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.9e-09 65.5 36 86.1
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 2.5e-09 65.1 36 77.8
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 4.3e-09 64.3 35 82.9
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 5.6e-09 63.9 36 86.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 5.6e-09 63.9 36 75.0
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 7.3e-09 63.5 33 84.8
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 7.3e-09 63.5 36 80.6
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 9.5e-09 63.2 36 80.6
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.5e-09 63.2 79 48.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.2e-08 62.8 36 77.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.2e-08 62.8 36 77.8
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.2e-08 62.8 36 77.8
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.6e-08 62.4 36 77.8
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 8.1e-08 60.1 34 76.5
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 9.9e-06 53.1 39 61.5


User provided reference genes

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