Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002488 Camellia sinensis var. sinensis HOM05D003544 ORTHO05D003830 8.7e-29 129.4 57 100.0
CSS0004294 Camellia sinensis var. sinensis HOM05D003544 ORTHO05D003830 2.0e-17 91.7 46 91.3
Oeu017652.1 Olea europaea HOM05D003544 ORTHO05D003830 2.1e-14 81.6 44 79.5
RcHm_v2.0_Chr1g0367981 Rosa chinensis HOM05D003544 ORTHO05D003830 4.6e-14 80.5 47 76.6
Actinidia13885 Actinidia chinensis HOM05D003544 ORTHO05D003830 6.1e-14 80.1 46 76.1
Rhsim09G0167200 Rhododendron simsii HOM05D003544 ORTHO05D003830 6.1e-14 80.1 46 80.4
Thecc.10G037000 Theobroma cacao HOM05D003544 ORTHO05D003830 7.9e-14 79.7 44 77.3
Potri.010G201500 Populus trichocarpa HOM05D003544 ORTHO05D003830 1.4e-13 79.0 46 78.3
Sabra10G0155500 Salix brachista HOM05D003544 ORTHO05D003830 1.4e-13 79.0 46 78.3
MD07G1201500 Malus domestica HOM05D003544 ORTHO05D003830 1.8e-13 78.6 46 76.1
vmacro10222 Vaccinium macrocarpon HOM05D003544 ORTHO05D003830 1.8e-13 78.6 46 78.3
COL.COLO4_15089 Corchorus olitorius HOM05D003544 ORTHO05D003830 2.3e-13 78.2 44 77.3
MD01G1136500 Malus domestica HOM05D003544 ORTHO05D003830 2.3e-13 78.2 46 76.1
Cfa001450 Carpinus fangiana HOM05D003544 ORTHO05D003830 3.9e-13 77.4 46 76.1
Haze_17091 Corylus avellana HOM05D003544 ORTHO05D003830 3.9e-13 77.4 46 76.1
FAN03G2315 Fragaria x ananassa HOM05D003544 ORTHO05D003830 3.9e-13 77.4 47 74.5
Ah.16g102480 Amaranthus hybridus HOM05D003544 ORTHO05D003392 6.7e-13 76.6 44 72.7
AUR62012119 Chenopodium quinoa HOM05D003544 ORTHO05D003830 8.8e-13 76.3 44 70.5
FvH4_7g22830 Fragaria vesca HOM05D003544 ORTHO05D003830 8.8e-13 76.3 47 72.3
FAN06G3709 Fragaria x ananassa HOM05D003544 ORTHO05D003830 8.8e-13 76.3 47 72.3
Atru.chr12.416 Acer truncatum HOM05D003544 ORTHO05D003830 1.1e-12 75.9 46 73.9
Aqoxy1G00897 Aquilegia oxysepala HOM05D003544 ORTHO05D003830 1.1e-12 75.9 46 73.9
CiPaw.01G289700 Carya illinoinensis HOM05D003544 ORTHO05D003830 1.1e-12 75.9 46 76.1
QL08p060246 Quercus lobata HOM05D003544 ORTHO05D003830 1.5e-12 75.5 45 73.3
QL08p060482 Quercus lobata HOM05D003544 ORTHO05D003830 1.5e-12 75.5 45 73.3
FAN10G3533 Fragaria x ananassa HOM05D003544 ORTHO05D003830 1.9e-12 75.1 47 72.3
Hund16071 Selenicereus undatus HOM05D003544 ORTHO05D003830 1.9e-12 75.1 46 73.9
Manes.07G118000 Manihot esculenta HOM05D003544 ORTHO05D003830 2.5e-12 74.7 46 78.3
TPR.G15819 Trifolium pratense HOM05D003544 ORTHO05D003830 2.5e-12 74.7 44 72.7
TAR623G1685 Trochodendron aralioides HOM05D003544 ORTHO05D003830 2.5e-12 74.7 46 73.9
Duzib114G0911 Durio zibethinus HOM05D003544 ORTHO05D003830 3.3e-12 74.3 44 75.0
GSVIVG01016511001 Vitis vinifera HOM05D003544 ORTHO05D003830 3.3e-12 74.3 46 73.9
FAN01G0392 Fragaria x ananassa HOM05D000150 ORTHO05D003830 4.3e-12 73.9 45 71.1
FAN01G0956 Fragaria x ananassa HOM05D000150 ORTHO05D003830 4.3e-12 73.9 45 71.1
Hma1.2p1_1480F.1_g286053 Hydrangea macrophylla HOM05D003544 ORTHO05D003830 5.7e-12 73.6 46 71.7
Sc10g0001720 Simmondsia chinensis HOM05D003544 ORTHO05D003830 5.7e-12 73.6 47 72.3
AUR62040717 Chenopodium quinoa HOM05D003544 ORTHO05D003830 7.4e-12 73.2 44 68.2
HPP92_006644 Vanilla planifolia HOM05D003544 ORTHO05D003830 7.4e-12 73.2 47 70.2
Duzib106G1967 Durio zibethinus HOM05D003544 ORTHO05D003830 9.7e-12 72.8 44 72.7
Phvul.001G233500 Phaseolus vulgaris HOM05D003544 ORTHO05D003830 9.7e-12 72.8 44 70.5
VMungo1383G2117 Vigna mungo HOM05D003544 ORTHO05D003830 9.7e-12 72.8 44 70.5
Cpa.g.sc1.429 Carica papaya HOM05D003544 ORTHO05D003830 1.3e-11 72.4 46 71.7
CANSAT56G1342 Cannabis sativa HOM05D003544 ORTHO05D003830 2.2e-11 71.6 46 71.7
FAN06G0546 Fragaria x ananassa HOM05D003544 ORTHO05D003830 2.2e-11 71.6 46 69.6
Medtr3g067995 Medicago truncatula HOM05D003544 ORTHO05D003830 2.2e-11 71.6 44 68.2
Cc02_g07580 Coffea canephora HOM05D003544 ORTHO05D003830 2.8e-11 71.2 47 70.2
Eucgr.G02946 Eucalyptus grandis HOM05D003544 ORTHO05D003830 2.8e-11 71.2 43 69.8
Ca_08172_v3 Cicer arietinum L. HOM05D003544 ORTHO05D003830 3.7e-11 70.9 44 68.2
Lj8A82T51 Lonicera japonica HOM05D003544 ORTHO05D003830 3.7e-11 70.9 46 71.7
Peaxi162Scf00164g01220 Petunia axillaris HOM05D003544 ORTHO05D003830 3.7e-11 70.9 38 73.7
Psat0s5242g0040 Pisum sativum HOM05D003544 ORTHO05D003830 3.7e-11 70.9 44 68.2
arahy.Tifrunner.gnm1.ann1.2U9KWS Arachis hypogaea HOM05D003544 ORTHO05D003830 4.8e-11 70.5 44 68.2
arahy.Tifrunner.gnm1.ann1.95BPNM Arachis hypogaea HOM05D003544 ORTHO05D003830 4.8e-11 70.5 44 68.2
Ciclev10032379m.g Citrus clementina HOM05D003544 ORTHO05D003830 4.8e-11 70.5 46 71.7
Gohir.A10G221000 Gossypium hirsutum HOM05D003544 ORTHO05D003830 4.8e-11 70.5 44 72.7
Gohir.D10G233200 Gossypium hirsutum HOM05D003544 ORTHO05D003830 4.8e-11 70.5 44 72.7
Gorai.011G266800 Gossypium raimondii HOM05D003544 ORTHO05D003830 4.8e-11 70.5 44 72.7
Lj1C940T8 Lonicera japonica HOM05D003544 ORTHO05D003830 4.8e-11 70.5 46 71.7
Lalb_Chr15g0084651 Lupinus albus HOM05D003544 ORTHO05D003830 4.8e-11 70.5 44 68.2
TWI15G1030 Tripterygium wilfordii HOM05D003544 ORTHO05D003830 4.8e-11 70.5 46 69.6
Prupe.2G238100 Prunus persica HOM05D003544 ORTHO05D003830 6.3e-11 70.1 47 70.2
Zm00001eb012200 Zea mays HOM05D003544 ORTHO05D003830 6.3e-11 70.1 46 67.4
Zm00001eb397760 Zea mays HOM05D003544 ORTHO05D003830 6.3e-11 70.1 46 67.4
Medtr3g067985 Medicago truncatula HOM05D003544 ORTHO05D003830 1.1e-10 69.3 40 70.0
PSO339G1680 Papaver somniferum HOM05D003544 ORTHO05D003830 1.1e-10 69.3 46 67.4
Glyma.11G220200 Glycine max HOM05D003544 ORTHO05D003830 1.4e-10 68.9 38 73.7
Glyma.18G037200 Glycine max HOM05D003544 ORTHO05D003830 1.4e-10 68.9 38 73.7
Lj6g0009635 Lotus japonicus HOM05D003544 ORTHO05D003830 1.4e-10 68.9 44 65.9
PGR119G0781 Punica granatum HOM05D003544 ORTHO05D003830 1.4e-10 68.9 45 71.1
ClCG11G006780 Citrullus lanatus HOM05D003544 ORTHO05D003830 1.8e-10 68.6 45 68.9
COL.COLO4_18562 Corchorus olitorius HOM05D003544 ORTHO05D003830 1.8e-10 68.6 46 69.6
MELO3C008223.2 Cucumis melo HOM05D003544 ORTHO05D003830 1.8e-10 68.6 45 68.9
ECA232G4890 Erigeron canadensis HOM05D003544 ORTHO05D003830 3.1e-10 67.8 42 66.7
Os03g0272300 Oryza sativa ssp. japonica HOM05D003544 ORTHO05D003830 4.1e-10 67.4 44 70.5
Sopen05g031560 Solanum pennellii HOM05D003544 ORTHO05D003830 4.1e-10 67.4 46 69.6
PGSC0003DMG400027142 Solanum tuberosum HOM05D000478 ORTHO05D003830 4.1e-10 67.4 46 69.6
CDE08G0984 Ceratophyllum demersum HOM05D003544 ORTHO05D003830 5.3e-10 67.0 46 63.0
PSO063G3772 Papaver somniferum HOM05D003544 ORTHO05D003830 5.3e-10 67.0 46 65.2
Ciclev10030412m.g Citrus clementina HOM05D003544 ORTHO05D003830 6.9e-10 66.6 46 65.2
Duzib168G0263 Durio zibethinus HOM05D003544 ORTHO05D003830 9.1e-10 66.2 46 67.4
Gohir.A13G227000 Gossypium hirsutum HOM05D003544 ORTHO05D003830 9.1e-10 66.2 46 65.2
Gohir.D13G232300 Gossypium hirsutum HOM05D003544 ORTHO05D003830 9.1e-10 66.2 46 65.2
Gorai.013G263100 Gossypium raimondii HOM05D003544 ORTHO05D003830 9.1e-10 66.2 46 65.2
BcaB01g00085 Brassica carinata HOM05D003544 ORTHO05D003830 1.2e-09 65.9 50 62.0
QL01p030710 Quercus lobata HOM05D003544 ORTHO05D003830 1.2e-09 65.9 45 66.7
CsaV3_6G001260 Cucumis sativus L. HOM05D003544 ORTHO05D003830 1.5e-09 65.5 45 66.7
MBI05_g29687_MAGBIO Magnolia biondii HOM05D003544 ORTHO05D003830 1.5e-09 65.5 36 72.2
EL10Ac2g04722 Beta vulgaris HOM05D003544 ORTHO05D003830 2.0e-09 65.1 34 73.5
HanXRQChr10g0312851 Helianthus annuus HOM05D003544 ORTHO05D003830 2.0e-09 65.1 42 64.3
SGA_v2.0_scaffold2G01024 Striga asiatica HOM05D003544 ORTHO05D003830 2.0e-09 65.1 44 68.2
Thecc.09G317500 Theobroma cacao HOM05D003544 ORTHO05D003830 2.0e-09 65.1 46 67.4
Thhalv10010626m.g Eutrema salsugineum HOM05D003544 ORTHO05D003830 3.4e-09 64.3 46 65.2
Rhsim13G0078200 Rhododendron simsii HOM05D000082 ORTHO05D003830 3.4e-09 64.3 38 71.1
Solyc05g053040.3 Solanum lycopersicum HOM05D003544 ORTHO05D003830 3.4e-09 64.3 46 67.4
Aa31LG10G10560 Aethionema arabicum HOM05D003544 ORTHO05D003830 4.5e-09 63.9 38 68.4
A09p48540 Brassica napus HOM05D003544 ORTHO05D003830 4.5e-09 63.9 37 70.3
C08p30840 Brassica napus HOM05D003544 ORTHO05D003830 4.5e-09 63.9 49 63.3
Cfa011530 Carpinus fangiana HOM05D003544 ORTHO05D003830 4.5e-09 63.9 39 64.1
Haze_24135 Corylus avellana HOM05D003544 ORTHO05D003830 4.5e-09 63.9 39 64.1
Duzib150G0631 Durio zibethinus HOM05D003544 ORTHO05D003830 4.5e-09 63.9 46 65.2
Sed0003735 Sechium edule HOM05D003544 ORTHO05D003830 4.5e-09 63.9 45 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3221 Anthoceros agrestis HOM05D003544 ORTHO05D003830 5.9e-09 63.5 44 61.4
CiPaw.13G090700 Carya illinoinensis HOM05D003544 ORTHO05D003830 5.9e-09 63.5 46 65.2
Eucgr.J02038 Eucalyptus grandis HOM05D003544 ORTHO05D003830 5.9e-09 63.5 46 63.0
Nitab4.5_0006365g0020 Nicotiana tabacum HOM05D003544 ORTHO05D003830 5.9e-09 63.5 44 63.6
Potri.009G034700 Populus trichocarpa HOM05D003544 ORTHO05D003830 5.9e-09 63.5 46 63.0
GSVIVG01024921001 Vitis vinifera HOM05D003544 ORTHO05D003830 5.9e-09 63.5 38 65.8
Gohir.A03G044500 Gossypium hirsutum HOM05D003544 ORTHO05D003830 7.7e-09 63.2 34 76.5
Gohir.D03G122700 Gossypium hirsutum HOM05D003544 ORTHO05D003830 7.7e-09 63.2 34 76.5
Migut.F01531 Erythranthe guttata HOM05D003544 ORTHO05D003830 1.0e-08 62.8 46 67.4
Lj3g0017508 Lotus japonicus HOM05D003544 ORTHO05D003830 1.0e-08 62.8 39 64.1
AL5G36700 Arabidopsis lyrata HOM05D003544 ORTHO05D003830 1.3e-08 62.4 46 65.2
AT3G55530 Arabidopsis thaliana HOM05D003544 ORTHO05D003830 1.3e-08 62.4 46 65.2
Carub.0005s2226 Capsella rubella HOM05D003544 ORTHO05D003830 1.3e-08 62.4 46 65.2
CDE02G1059 Ceratophyllum demersum HOM05D003544 ORTHO05D003830 1.3e-08 62.4 45 62.2
SGA_v2.0_scaffold221G42690 Striga asiatica HOM05D003544 ORTHO05D003830 1.3e-08 62.4 40 70.0
vmacro03041 Vaccinium macrocarpon HOM05D003544 ORTHO05D003830 1.3e-08 62.4 30 83.3
MSTRG.276 Avicennia marina HOM05D003544 ORTHO05D003830 1.7e-08 62.0 46 63.0
CSS0032889 Camellia sinensis var. sinensis HOM05D003544 ORTHO05D003830 1.7e-08 62.0 39 66.7
Duzib170G0696 Durio zibethinus HOM05D003544 ORTHO05D003830 1.7e-08 62.0 46 63.0
Hma1.2p1_0757F.1_g213320 Hydrangea macrophylla HOM05D003544 ORTHO05D003830 1.7e-08 62.0 47 61.7
BolC8t50710H Brassica oleracea HOM05D003544 ORTHO05D003830 2.2e-08 61.6 37 70.3
CANSAT54G2540 Cannabis sativa HOM05D003544 ORTHO05D003830 2.2e-08 61.6 30 80.0
Gorai.003G129400 Gossypium raimondii HOM05D003544 ORTHO05D003830 2.2e-08 61.6 31 77.4
Prupe.6G071900 Prunus persica HOM05D003544 ORTHO05D003830 2.2e-08 61.6 46 63.0
Phvul.011G062500 Phaseolus vulgaris HOM05D003544 ORTHO05D003830 2.9e-08 61.2 30 80.0
Sed0018949 Sechium edule HOM05D003544 ORTHO05D003830 2.9e-08 61.2 45 62.2
Hund04929 Selenicereus undatus HOM05D003544 ORTHO05D003830 2.9e-08 61.2 47 59.6
THA.LOC104810038 Tarenaya hassleriana HOM05D003544 ORTHO05D003830 2.9e-08 61.2 39 66.7
CARHR165590 Cardamine hirsuta HOM05D003544 ORTHO05D003830 3.8e-08 60.8 47 61.7
MSTRG.8261 Avicennia marina HOM05D003544 ORTHO05D003830 5.0e-08 60.5 46 60.9
AUR62020020 Chenopodium quinoa HOM05D002577 ORTHO05D003830 5.0e-08 60.5 45 57.8
Lsat_1_v5_gn_2_118280 Lactuca sativa HOM05D003544 ORTHO05D003830 5.0e-08 60.5 29 82.8
Lalb_Chr24g0394051 Lupinus albus HOM05D003544 ORTHO05D003830 5.0e-08 60.5 40 65.0
Glyma.11G137400 Glycine max HOM05D003544 ORTHO05D003830 6.5e-08 60.1 39 61.5
Glyma.12G060800 Glycine max HOM05D003544 ORTHO05D003830 6.5e-08 60.1 39 61.5
MD11G1096300 Malus domestica HOM05D003544 ORTHO05D003830 6.5e-08 60.1 29 82.8
PGR142G2124 Punica granatum HOM05D003544 ORTHO05D003830 6.5e-08 60.1 34 67.6
TPR.G23586 Trifolium pratense HOM05D003544 ORTHO05D003830 6.5e-08 60.1 38 63.2
Cpa.g.sc81.110 Carica papaya HOM05D003544 ORTHO05D003830 8.5e-08 59.7 30 76.7
Manes.01G170400 Manihot esculenta HOM05D003544 ORTHO05D003830 8.5e-08 59.7 39 59.0
Lj1A148T52 Lonicera japonica HOM05D003544 ORTHO05D003830 1.1e-07 59.3 34 73.5
Ah.15g098530 Amaranthus hybridus HOM05D003544 ORTHO05D003830 1.4e-07 58.9 29 82.8
EL10Ac7g16053 Beta vulgaris HOM05D003544 ORTHO05D003830 1.4e-07 58.9 33 69.7
BcaC07g39879 Brassica carinata HOM05D003544 ORTHO05D003830 1.4e-07 58.9 37 67.6
Sp5g06950 Schrenkiella parvula HOM05D003544 ORTHO05D003830 1.4e-07 58.9 30 80.0
VMungo1127G1202 Vigna mungo HOM05D003544 ORTHO05D003830 1.4e-07 58.9 26 84.6
arahy.Tifrunner.gnm1.ann1.1A4P42 Arachis hypogaea HOM05D003544 ORTHO05D003830 1.9e-07 58.5 28 82.1
Psat7g210640 Pisum sativum HOM05D003544 ORTHO05D003830 1.9e-07 58.5 39 61.5
TWI31G1295 Tripterygium wilfordii HOM05D003544 ORTHO05D003830 1.9e-07 58.5 39 59.0
unitig_0.g1019 Utricularia gibba HOM05D003544 ORTHO05D003830 1.9e-07 58.5 29 79.3
Atru.chr3.3967 Acer truncatum HOM05D003544 ORTHO05D003830 2.5e-07 58.2 46 58.7
AUR62001751 Chenopodium quinoa HOM05D003544 ORTHO05D003830 3.2e-07 57.8 29 75.9
SHI22634 Sapria himalayana HOM05D003544 ORTHO05D003830 3.2e-07 57.8 34 70.6
Medtr4g064550 Medicago truncatula HOM05D003544 ORTHO05D003830 4.2e-07 57.4 46 60.9
DCAR_018921 Daucus carota HOM05D003544 ORTHO05D003830 5.5e-07 57.0 38 60.5
Medtr4g064560 Medicago truncatula HOM05D003544 ORTHO05D003830 7.2e-07 56.6 46 60.9
PSO339G2861 Papaver somniferum HOM05D003544 ORTHO05D003830 1.6e-06 55.5 28 71.4
PSO513G0026 Papaver somniferum HOM05D003544 ORTHO05D003830 1.6e-06 55.5 26 80.8
Mapoly0020s0054 Marchantia polymorpha HOM05D003544 ORTHO05D003830 2.7e-06 54.7 45 55.6
Ca_20624_v3 Cicer arietinum L. HOM05D003544 ORTHO05D003830 6.1e-06 53.5 27 77.8
PSO339G1503 Papaver somniferum HOM05D003544 ORTHO05D003830 6.1e-06 53.5 26 76.9


User provided reference genes

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