Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.3e-144 514.6 253 100.0
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.8e-143 511.9 253 99.6
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.8e-134 482.6 253 94.5
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 1.8e-126 456.1 249 89.6
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 3.4e-125 451.8 249 89.2
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 3.4e-125 451.8 251 86.5
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 4.4e-125 451.4 251 88.0
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 5.8e-125 451.1 251 86.5
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 2.2e-124 449.1 249 87.6
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 2.9e-124 448.7 249 87.6
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.4e-123 446.4 251 87.6
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 7.1e-123 444.1 248 87.5
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 9.3e-123 443.7 248 85.9
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 2.1e-122 442.6 249 85.9
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 2.7e-122 442.2 251 85.3
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 3.5e-122 441.8 248 86.7
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 4.6e-122 441.4 248 87.1
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 4.6e-122 441.4 248 85.9
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 7.8e-122 440.7 251 86.1
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 1.3e-121 439.9 248 86.7
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 3.0e-121 438.7 249 85.5
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 3.0e-121 438.7 251 86.1
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 3.0e-121 438.7 248 85.9
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 3.0e-121 438.7 249 85.9
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.1e-121 438.0 253 87.0
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 5.1e-121 438.0 251 84.5
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 1.1e-120 436.8 251 84.5
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 1.1e-120 436.8 251 85.7
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 1.5e-120 436.4 251 85.7
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 1.5e-120 436.4 251 84.9
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 2.5e-120 435.6 252 83.3
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 2.5e-120 435.6 248 85.5
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 9.6e-120 433.7 248 85.1
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 1.6e-119 433.0 253 83.4
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 2.1e-119 432.6 251 84.5
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 2.1e-119 432.6 251 85.3
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 2.8e-119 432.2 248 85.1
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 3.6e-119 431.8 251 85.3
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 3.6e-119 431.8 251 82.9
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 1.1e-118 430.3 247 84.6
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 1.4e-118 429.9 251 83.3
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 1.8e-118 429.5 248 83.5
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 2.4e-118 429.1 251 83.3
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 5.3e-118 427.9 248 84.7
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 3.4e-117 425.2 250 83.2
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 9.9e-117 423.7 251 82.5
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 9.9e-117 423.7 251 82.5
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 1.7e-116 422.9 251 82.1
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 2.9e-116 422.2 248 84.3
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 2.9e-116 422.2 249 83.1
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 3.8e-116 421.8 251 82.9
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 4.9e-116 421.4 251 81.7
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 4.9e-116 421.4 251 81.7
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 8.4e-116 420.6 251 82.5
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.1e-115 420.2 253 80.2
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 1.9e-115 419.5 253 80.2
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 3.2e-115 418.7 251 80.1
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 5.4e-115 417.9 251 80.9
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 5.4e-115 417.9 252 81.0
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 7.1e-115 417.5 248 82.7
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 2.1e-114 416.0 261 78.5
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 2.3e-113 412.5 253 79.8
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 2.3e-113 412.5 251 78.5
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 4.3e-112 408.3 259 77.6
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 2.8e-111 405.6 253 80.6
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 1.1e-110 403.7 250 80.0
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.5e-109 399.8 249 79.5
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 2.0e-109 399.4 249 79.9
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 4.5e-109 398.3 241 80.9
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 1.7e-108 396.4 249 78.7
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 1.7e-108 396.4 239 81.2
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 2.2e-108 396.0 249 78.3
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 2.2e-108 396.0 248 77.8
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 2.9e-108 395.6 252 79.4
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 2.9e-108 395.6 249 78.3
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 2.9e-108 395.6 249 78.3
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 2.9e-108 395.6 245 78.8
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 3.8e-108 395.2 244 79.5
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 4.9e-108 394.8 253 77.1
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 4.9e-108 394.8 253 78.3
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 1.4e-107 393.3 244 79.1
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 1.9e-107 392.9 239 80.8
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.5e-107 391.3 254 79.9
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 5.5e-107 391.3 248 77.0
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 9.3e-107 390.6 238 80.3
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 1.2e-106 390.2 250 76.4
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 1.6e-106 389.8 249 77.5
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 1.6e-106 389.8 239 80.8
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 3.0e-105 385.6 263 73.0
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 3.9e-105 385.2 248 77.0
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.4e-102 376.7 201 90.5
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 6.9e-102 374.4 242 74.8
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 1.2e-101 373.6 249 73.5
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 1.5e-101 373.2 247 75.3
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 1.1e-99 367.1 241 74.3
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 1.9e-99 366.3 236 75.8
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.5e-99 365.9 239 74.1
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 7.9e-98 360.9 253 75.1
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 1.0e-97 360.5 239 76.2
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 1.0e-92 344.0 240 69.6
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 8.5e-92 340.9 267 63.3
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.9e-91 339.7 253 68.0
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.5e-91 339.3 250 71.6
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 2.3e-89 332.8 235 66.8
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 6.7e-89 331.3 263 61.6
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 8.7e-89 330.9 191 83.2
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 1.5e-88 330.1 238 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 6.3e-87 324.7 254 62.6
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 1.7e-84 316.6 267 58.4
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 1.9e-83 313.2 243 69.5
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 1.4e-78 297.0 193 75.6
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 5.0e-76 288.5 185 76.2
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 4.7e-74 282.0 255 53.7
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 5.2e-73 278.5 157 86.6
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 4.4e-72 275.4 159 85.5
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 9.7e-72 274.2 159 82.4
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.1e-70 269.2 250 59.6
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 7.7e-69 264.6 238 53.8
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 3.3e-64 249.2 234 54.3
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 1.1e-62 244.2 142 86.6
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 2.4e-54 216.5 233 45.5
CSS0016583 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.6e-53 213.8 120 87.5
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.0e-53 213.4 195 57.4
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 1.3e-52 210.7 118 83.1
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 4.4e-48 195.7 117 78.6
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.3e-43 179.5 96 90.6
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.2e-40 171.0 103 77.7
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 7.5e-32 141.7 83 85.5
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 4.1e-30 136.0 85 78.8
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 7.8e-29 131.7 81 76.5
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 1.7e-15 87.4 56 76.8
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 1.3e-12 77.8 48 72.9
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.3e-12 77.8 49 73.5
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 6.6e-12 75.5 53 73.6
ATR1096G015 Amborella trichopoda HOM05D005859 ORTHO05D007576 9.6e-11 71.6 54 57.4
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 4.0e-09 66.2 179 27.9
Eucgr.D01073 Eucalyptus grandis HOM05D005695 ORTHO05D007810 9.9e-08 61.6 169 32.5
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 1.3e-07 61.2 218 29.8
HPP92_023786 Vanilla planifolia HOM05D005695 ORTHO05D007810 1.3e-07 61.2 175 32.0
Zm00001eb004570 Zea mays HOM05D005695 ORTHO05D007810 2.9e-07 60.1 205 29.8
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 4.9e-07 59.3 210 30.0
SEGI_31772 Sequoiadendron giganteum HOM05D005695 ORTHO05D007810 4.9e-07 59.3 171 29.8
Mapoly0006s0284 Marchantia polymorpha HOM05D005695 ORTHO05D007810 8.4e-07 58.5 173 27.7
ATR0568G060 Amborella trichopoda HOM05D005695 ORTHO05D007810 1.1e-06 58.2 146 31.5
Nn7g37385 Nelumbo nucifera HOM05D005695 ORTHO05D007810 1.1e-06 58.2 183 29.5
Pp3c18_9830 Physcomitrium patens HOM05D005695 ORTHO05D007810 1.1e-06 58.2 266 25.2
Glyma.07G122300 Glycine max HOM05D005695 ORTHO05D007810 1.4e-06 57.8 172 30.2
Hma1.2p1_0128F.1_g060080 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 1.4e-06 57.8 199 30.2
PSO063G4708 Papaver somniferum HOM05D005695 ORTHO05D007810 1.4e-06 57.8 218 28.9
Gorai.007G250100 Gossypium raimondii HOM05D005695 ORTHO05D007810 2.4e-06 57.0 181 32.0
TAR715G0002 Trochodendron aralioides HOM05D005695 ORTHO05D007810 2.4e-06 57.0 171 28.7
MCO05G350 Micromonas commoda HOM05D005695 ORTHO05D007810 3.2e-06 56.6 184 25.0
Cfa003697 Carpinus fangiana HOM05D005695 ORTHO05D007810 4.2e-06 56.2 175 30.9
Ciclev10032172m.g Citrus clementina HOM05D005695 ORTHO05D007810 4.2e-06 56.2 175 33.1
CANSAT54G1451 Cannabis sativa HOM05D005695 ORTHO05D007810 5.4e-06 55.8 189 29.1
CiPaw.02G047100 Carya illinoinensis HOM05D005695 ORTHO05D007810 5.4e-06 55.8 179 29.6
Thecc.05G234400 Theobroma cacao HOM05D005695 ORTHO05D007810 5.4e-06 55.8 165 33.3
ClCG05G002480 Citrullus lanatus HOM05D005695 ORTHO05D007810 7.1e-06 55.5 180 31.1
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 9.3e-06 55.1 236 24.2
Haze_15789 Corylus avellana HOM05D005695 ORTHO05D007810 9.3e-06 55.1 175 30.9
Gohir.A11G224224 Gossypium hirsutum HOM05D005695 ORTHO05D007810 9.3e-06 55.1 180 31.7
HanXRQChr04g0117691 Helianthus annuus HOM05D005695 ORTHO05D007810 9.3e-06 55.1 175 32.0


User provided reference genes

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