Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002368 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 5.3e-142 507.7 259 100.0
CSS0010724 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 4.7e-114 414.8 277 81.2
CSS0008587 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 3.7e-111 405.2 277 80.1
CSS0012964 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006683 3.9e-52 209.1 122 86.1
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.4e-46 190.7 121 76.9
Dinv14946 Davidia involucrata HOM05D000070 ORTHO05D006683 5.5e-46 188.7 121 78.5
Dinv20210 Davidia involucrata HOM05D000070 ORTHO05D006683 2.1e-45 186.8 121 76.9
Actinidia35238 Actinidia chinensis HOM05D000070 ORTHO05D006683 1.4e-44 184.1 121 75.2
Gohir.A01G060800 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.7e-42 177.2 121 73.6
Gohir.D01G047300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.7e-42 177.2 121 73.6
Gorai.002G066800 Gossypium raimondii HOM05D000070 ORTHO05D006683 1.7e-42 177.2 121 73.6
QL08p023642 Quercus lobata HOM05D000070 ORTHO05D006683 2.2e-42 176.8 121 72.7
TAR626G0798 Trochodendron aralioides HOM05D000070 ORTHO05D006683 2.2e-42 176.8 121 71.9
Duzib213G1081 Durio zibethinus HOM05D000070 ORTHO05D006683 2.8e-42 176.4 121 71.9
Nitab4.5_0002019g0010 Nicotiana tabacum HOM05D000070 ORTHO05D006683 2.8e-42 176.4 120 73.3
GSVIVG01014274001 Vitis vinifera HOM05D000070 ORTHO05D006683 3.7e-42 176.0 121 72.7
Nitab4.5_0000246g0030 Nicotiana tabacum HOM05D000070 ORTHO05D006683 4.8e-42 175.6 121 72.7
Cfa020618 Carpinus fangiana HOM05D000070 ORTHO05D006683 6.3e-42 175.3 121 71.1
Haze_09387 Corylus avellana HOM05D000070 ORTHO05D006683 8.2e-42 174.9 121 71.1
Sopen07g030990 Solanum pennellii HOM05D000070 ORTHO05D006683 8.2e-42 174.9 121 71.9
PGSC0003DMG400012401 Solanum tuberosum HOM05D000070 ORTHO05D006683 8.2e-42 174.9 121 71.9
CiPaw.11G166700 Carya illinoinensis HOM05D000070 ORTHO05D006683 1.1e-41 174.5 121 70.2
Manes.15G090100 Manihot esculenta HOM05D000070 ORTHO05D006683 1.1e-41 174.5 121 71.1
CANSAT35G1857 Cannabis sativa HOM05D000070 ORTHO05D006683 1.4e-41 174.1 121 72.7
Gohir.D08G032300 Gossypium hirsutum HOM05D000070 ORTHO05D006683 1.4e-41 174.1 121 72.7
Gorai.004G029700 Gossypium raimondii HOM05D000070 ORTHO05D006683 1.4e-41 174.1 121 72.7
Atru.chr2.2387 Acer truncatum HOM05D000070 ORTHO05D006683 1.8e-41 173.7 121 71.1
Duzib170G1082 Durio zibethinus HOM05D000070 ORTHO05D006683 1.8e-41 173.7 121 71.9
CAN.G162.29 Capsicum annuum HOM05D000070 ORTHO05D006683 3.1e-41 172.9 121 71.1
MSTRG.14209 Avicennia marina HOM05D000070 ORTHO05D006683 5.3e-41 172.2 121 70.2
Prupe.4G173800 Prunus persica HOM05D000070 ORTHO05D006683 5.3e-41 172.2 121 71.1
Peaxi162Scf00069g01842 Petunia axillaris HOM05D000070 ORTHO05D006683 7.0e-41 171.8 121 70.2
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 9.1e-41 171.4 121 71.9
Solyc07g062770.2 Solanum lycopersicum HOM05D000070 ORTHO05D006683 9.1e-41 171.4 121 70.2
Lj1A837T49 Lonicera japonica HOM05D000070 ORTHO05D006683 1.2e-40 171.0 121 71.1
Hma1.2p1_0416F.1_g148460 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 2.0e-40 170.2 121 69.4
Hma1.2p1_0416F.1_g148470 Hydrangea macrophylla HOM05D000070 ORTHO05D006683 2.0e-40 170.2 121 69.4
MD11G1256000 Malus domestica HOM05D000070 ORTHO05D006683 2.0e-40 170.2 121 71.1
ClCG05G009240 Citrullus lanatus HOM05D000070 ORTHO05D006683 2.6e-40 169.9 121 68.6
MELO3C019399.2 Cucumis melo HOM05D000070 ORTHO05D006683 2.6e-40 169.9 121 68.6
CsaV3_3G019540 Cucumis sativus L. HOM05D000070 ORTHO05D006683 2.6e-40 169.9 121 68.6
Thecc.07G098900 Theobroma cacao HOM05D000070 ORTHO05D006683 4.5e-40 169.1 121 69.4
TWI38G2035 Tripterygium wilfordii HOM05D000070 ORTHO05D006683 5.9e-40 168.7 121 67.8
Ciclev10007229m.g Citrus clementina HOM05D000070 ORTHO05D006683 1.3e-39 167.5 121 68.6
ECA240G2408 Erigeron canadensis HOM05D000070 ORTHO05D006683 1.3e-39 167.5 121 69.4
HanXRQChr13g0391161 Helianthus annuus HOM05D000070 ORTHO05D006683 1.7e-39 167.2 121 70.2
Nn1g06393 Nelumbo nucifera HOM05D000070 ORTHO05D006683 1.7e-39 167.2 121 67.8
BraA03t13065Z Brassica rapa HOM05D000070 ORTHO05D006683 2.2e-39 166.8 147 62.6
Lj3g0013945 Lotus japonicus HOM05D000070 ORTHO05D006683 6.5e-39 165.2 122 67.2
SGA_v2.0_scaffold70G23693 Striga asiatica HOM05D000070 ORTHO05D006683 8.5e-39 164.9 121 67.8
THA.LOC104810458 Tarenaya hassleriana HOM05D000070 ORTHO05D006683 1.9e-38 163.7 121 68.6
Lsat_1_v5_gn_9_98220 Lactuca sativa HOM05D000070 ORTHO05D006683 3.2e-38 162.9 123 67.5
Sabra11G0127000 Salix brachista HOM05D000070 ORTHO05D006683 3.2e-38 162.9 121 66.9
A03p39160 Brassica napus HOM05D000070 ORTHO05D006683 5.5e-38 162.2 120 69.2
DCAR_013128 Daucus carota HOM05D000070 ORTHO05D006683 5.5e-38 162.2 121 69.4
Potri.011G141400 Populus trichocarpa HOM05D000070 ORTHO05D006683 7.2e-38 161.8 119 67.2
SalBow7G0119 Salvia bowleyana HOM05D000070 ORTHO05D006683 7.2e-38 161.8 121 66.1
TPR.G7945 Trifolium pratense HOM05D000070 ORTHO05D006683 7.2e-38 161.8 122 63.9
Sed0024008 Sechium edule HOM05D000070 ORTHO05D006683 9.4e-38 161.4 120 66.7
Sc07g0002540 Simmondsia chinensis HOM05D000070 ORTHO05D006683 1.2e-37 161.0 121 64.5
arahy.Tifrunner.gnm1.ann1.48N9B9 Arachis hypogaea HOM05D000070 ORTHO05D006683 1.6e-37 160.6 121 65.3
Migut.H01962 Erythranthe guttata HOM05D000070 ORTHO05D006683 2.1e-37 160.2 121 66.1
RcHm_v2.0_Chr5g0032311 Rosa chinensis HOM05D000070 ORTHO05D006683 3.6e-37 159.5 121 67.8
EL10Ac4g08256 Beta vulgaris HOM05D000070 ORTHO05D006683 6.1e-37 158.7 121 65.3
Cc05_g11650 Coffea canephora HOM05D000070 ORTHO05D006683 1.0e-36 157.9 121 65.3
Thhalv10019880m.g Eutrema salsugineum HOM05D000070 ORTHO05D006683 1.4e-36 157.5 120 66.7
FvH4_3g19240 Fragaria vesca HOM05D000070 ORTHO05D006683 1.4e-36 157.5 121 67.8
FAN11G2237 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.4e-36 157.5 121 67.8
FAN21G0502 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.4e-36 157.5 121 67.8
FAN25G1528 Fragaria x ananassa HOM05D000070 ORTHO05D006683 1.4e-36 157.5 121 67.8
PSO541G4369 Papaver somniferum HOM05D000070 ORTHO05D006683 1.4e-36 157.5 121 66.9
Phvul.005G069600 Phaseolus vulgaris HOM05D000070 ORTHO05D006683 1.4e-36 157.5 121 64.5
BcaC01g03897 Brassica carinata HOM05D000070 ORTHO05D006683 1.8e-36 157.1 120 67.5
C03p47510 Brassica napus HOM05D000070 ORTHO05D006683 1.8e-36 157.1 120 67.5
BolC3t17015H Brassica oleracea HOM05D000070 ORTHO05D006683 1.8e-36 157.1 120 67.5
PGR083G0044 Punica granatum HOM05D000070 ORTHO05D006683 1.8e-36 157.1 121 64.5
Aa31LG8G2340 Aethionema arabicum HOM05D000070 ORTHO05D006683 2.3e-36 156.8 120 65.8
Glyma.13G273300 Glycine max HOM05D000070 ORTHO05D006683 2.3e-36 156.8 121 63.6
AL3G27480 Arabidopsis lyrata HOM05D000070 ORTHO05D006683 6.7e-36 155.2 120 65.8
AT3G15120 Arabidopsis thaliana HOM05D000070 ORTHO05D006683 6.7e-36 155.2 120 65.8
AUR62019488 Chenopodium quinoa HOM05D000070 ORTHO05D006683 6.7e-36 155.2 121 63.6
Ah.06g184760 Amaranthus hybridus HOM05D000070 ORTHO05D006683 8.8e-36 154.8 120 63.3
Sp3g13330 Schrenkiella parvula HOM05D000070 ORTHO05D006683 8.8e-36 154.8 121 64.5
Carub.0003s1477 Capsella rubella HOM05D000070 ORTHO05D006683 1.1e-35 154.5 120 65.8
AUR62036148 Chenopodium quinoa HOM05D000070 ORTHO05D006683 1.1e-35 154.5 121 63.6
Ca_03533_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006683 1.1e-35 154.5 121 62.8
Glyma.12G227000 Glycine max HOM05D000070 ORTHO05D006683 1.1e-35 154.5 121 64.5
Medtr2g078630 Medicago truncatula HOM05D000070 ORTHO05D006683 1.1e-35 154.5 121 62.8
Zm00001eb157300 Zea mays HOM05D000070 ORTHO05D006683 1.1e-35 154.5 120 64.2
FAN16G3451 Fragaria x ananassa HOM05D000070 ORTHO05D006683 2.0e-35 153.7 121 66.1
SHI21480 Sapria himalayana HOM05D000070 ORTHO05D006683 2.0e-35 153.7 121 64.5
Lalb_Chr20g0109491 Lupinus albus HOM05D000070 ORTHO05D006683 2.6e-35 153.3 120 66.7
Psat5g241520 Pisum sativum HOM05D000070 ORTHO05D006683 2.6e-35 153.3 121 62.0
VMungo1080G0328 Vigna mungo HOM05D000070 ORTHO05D006683 5.7e-35 152.1 121 63.6
Aqoxy1G02305 Aquilegia oxysepala HOM05D000070 ORTHO05D006683 7.4e-35 151.8 121 62.0
Lalb_Chr25g0286211 Lupinus albus HOM05D000070 ORTHO05D006683 1.7e-34 150.6 120 65.0
HPP92_024566 Vanilla planifolia HOM05D000070 ORTHO05D006683 2.8e-34 149.8 120 59.2
ATR0602G265 Amborella trichopoda HOM05D000070 ORTHO05D006683 6.3e-34 148.7 121 61.2
CARHR090100 Cardamine hirsuta HOM05D000070 ORTHO05D006683 1.1e-33 147.9 120 63.3
CDE10G0809 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 4.1e-33 146.0 120 60.0
CDE10G0445 Ceratophyllum demersum HOM05D000070 ORTHO05D006683 1.1e-30 137.9 111 61.3
SEGI_00098 Sequoiadendron giganteum HOM05D000070 ORTHO05D006683 2.2e-23 113.6 120 51.7
Eucgr.F01177 Eucalyptus grandis HOM05D000070 ORTHO05D006683 1.0e-20 104.8 86 62.8
Gohir.A08G021416 Gossypium hirsutum HOM05D000070 ORTHO05D006683 2.0e-19 100.5 77 68.8
TAR624G0378 Trochodendron aralioides HOM05D000070 ORTHO05D006683 3.4e-19 99.8 59 78.0
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 5.9e-16 89.0 45 97.8
CSS0000399 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 5.0e-15 85.9 43 97.7
CSS0033083 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D024697 5.0e-15 85.9 43 97.7
Pp3c8_5410 Physcomitrium patens HOM05D000070 ORTHO05D006683 1.5e-14 84.3 136 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1632 Anthoceros agrestis HOM05D000070 ORTHO05D006683 4.2e-14 82.8 137 38.7
Mapoly0043s0039 Marchantia polymorpha HOM05D036583 ORTHO05D006683 2.8e-13 80.1 140 35.0
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 6.1e-13 79.0 42 90.5
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 2.0e-11 73.9 54 68.5
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 4.4e-11 72.8 70 52.9
unitig_899.g15571 Utricularia gibba HOM05D000070 ORTHO05D006683 9.8e-11 71.6 62 62.9
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 1.7e-10 70.9 52 71.2
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 2.2e-10 70.5 53 67.9
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.2e-10 70.5 53 67.9
Lj9A311T56 Lonicera japonica HOM05D002759 ORTHO05D003290 2.2e-10 70.5 52 67.3
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 3.7e-10 69.7 52 69.2
vmacro01780 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 3.7e-10 69.7 43 79.1
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 4.9e-10 69.3 52 69.2
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 4.9e-10 69.3 52 67.3
CSS0010451 Camellia sinensis var. sinensis HOM05D000736 ORTHO05D002593 6.3e-10 68.9 56 69.6
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 8.3e-10 68.6 52 67.3
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 1.4e-09 67.8 52 67.3
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.4e-09 67.8 52 65.4
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.8e-09 67.4 52 65.4
ClCG04G000030 Citrullus lanatus HOM05D000070 ORTHO05D006683 2.4e-09 67.0 120 40.0
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 4.1e-09 66.2 52 63.5
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 5.4e-09 65.9 43 74.4
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 7.0e-09 65.5 52 63.5
Dinv25525 Davidia involucrata HOM05D000736 ORTHO05D002593 1.2e-08 64.7 56 66.1
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 1.6e-08 64.3 52 63.5
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.0e-08 63.9 45 66.7
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.7e-08 63.5 52 61.5
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.7e-08 63.5 52 65.4
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 3.5e-08 63.2 52 61.5
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 3.5e-08 63.2 53 58.5
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 3.5e-08 63.2 53 58.5
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 3.5e-08 63.2 53 58.5
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 4.5e-08 62.8 42 71.4
vmacro18627 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 4.5e-08 62.8 42 73.8
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 7.8e-08 62.0 54 63.0
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.3e-07 61.2 52 61.5
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.3e-07 60.5 54 61.1
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 2.3e-07 60.5 54 61.1
GSVIVG01005672001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.3e-07 60.5 53 62.3
Actinidia30248 Actinidia chinensis HOM05D000736 ORTHO05D002593 2.9e-07 60.1 57 57.9
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 2.9e-07 60.1 54 59.3
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.9e-07 60.1 53 56.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 3.9e-07 59.7 52 57.7
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 3.9e-07 59.7 42 66.7
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 5.0e-07 59.3 52 61.5
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 5.0e-07 59.3 52 57.7
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 5.0e-07 59.3 54 59.3
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 5.0e-07 59.3 54 59.3
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 6.6e-07 58.9 76 43.4
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.5e-06 57.8 42 61.9
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 1.9e-06 57.4 54 57.4
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 2.5e-06 57.0 52 59.6
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 2.5e-06 57.0 52 55.8
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.3e-06 56.6 54 55.6
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 3.3e-06 56.6 53 54.7
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 5.6e-06 55.8 52 63.5
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 5.6e-06 55.8 43 65.1
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 7.3e-06 55.5 42 59.5
GSVIVG01011206001 Vitis vinifera HOM05D002759 ORTHO05D003290 7.3e-06 55.5 54 57.4
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 9.5e-06 55.1 45 62.2
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 9.5e-06 55.1 45 62.2
FAN04G1156 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.5e-06 55.1 52 51.9
FAN13G1302 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.5e-06 55.1 52 51.9
SHI26609 Sapria himalayana HOM05D002759 ORTHO05D003290 9.5e-06 55.1 45 57.8
Thecc.09G071900 Theobroma cacao HOM05D000736 ORTHO05D002593 9.5e-06 55.1 60 58.3


User provided reference genes

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