Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002321 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 7.0e-78 295.0 333 100.0
Actinidia08137 Actinidia chinensis HOM05D002488 ORTHO05D002613 4.5e-24 116.3 304 75.7
Rhsim12G0040500 Rhododendron simsii HOM05D002488 ORTHO05D002613 3.9e-20 103.2 314 76.8
CSS0011614 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 7.6e-16 89.0 123 65.9
QL03p058006 Quercus lobata HOM05D002488 ORTHO05D002613 3.2e-14 83.6 121 70.2
TAR622G0986 Trochodendron aralioides HOM05D002488 ORTHO05D002613 1.2e-13 81.6 113 71.7
Cpa.g.sc33.24 Carica papaya HOM05D002488 ORTHO05D002613 2.1e-13 80.9 113 70.8
Potri.010G046500 Populus trichocarpa HOM05D002488 ORTHO05D002613 2.7e-13 80.5 113 70.8
Atru.chr11.2123 Acer truncatum HOM05D002488 ORTHO05D002613 3.5e-13 80.1 120 65.0
Atru.chr11.2138 Acer truncatum HOM05D002488 ORTHO05D002613 3.5e-13 80.1 120 65.0
CSS0033940 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 3.5e-13 80.1 117 68.4
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 4.6e-13 79.7 119 66.4
Haze_12251 Corylus avellana HOM05D002488 ORTHO05D002613 1.0e-12 78.6 113 70.8
Migut.K00602 Erythranthe guttata HOM05D002488 ORTHO05D002613 3.0e-12 77.0 114 67.5
Rhsim12G0167800 Rhododendron simsii HOM05D002488 ORTHO05D002613 3.9e-12 76.6 112 70.5
Dinv38530 Davidia involucrata HOM05D002488 ORTHO05D002613 5.1e-12 76.3 112 69.6
Oeu020887.1 Olea europaea HOM05D002488 ORTHO05D002613 6.7e-12 75.9 116 50.9
Thecc.03G025300 Theobroma cacao HOM05D002488 ORTHO05D002613 6.7e-12 75.9 120 66.7
Dinv24780 Davidia involucrata HOM05D002488 ORTHO05D002613 8.7e-12 75.5 309 44.0
CiPaw.11G020700 Carya illinoinensis HOM05D002488 ORTHO05D002613 1.5e-11 74.7 121 66.1
CiPaw.12G030700 Carya illinoinensis HOM05D002488 ORTHO05D002613 1.5e-11 74.7 121 63.6
Duzib068G0576 Durio zibethinus HOM05D002488 ORTHO05D002613 1.5e-11 74.7 118 64.4
Manes.13G024100 Manihot esculenta HOM05D002488 ORTHO05D002613 1.5e-11 74.7 113 67.3
Medtr5g032910 Medicago truncatula HOM05D002488 ORTHO05D002613 1.5e-11 74.7 125 48.8
Nn2g14939 Nelumbo nucifera HOM05D002488 ORTHO05D002613 1.9e-11 74.3 123 64.2
Lj5C129G10 Lonicera japonica HOM05D002488 ORTHO05D002613 2.5e-11 73.9 110 69.1
MSTRG.7934 Avicennia marina HOM05D002488 ORTHO05D002613 5.7e-11 72.8 121 62.0
Nn4g22610 Nelumbo nucifera HOM05D002488 ORTHO05D002613 5.7e-11 72.8 111 67.6
vmacro16644 Vaccinium macrocarpon HOM05D002488 ORTHO05D002613 5.7e-11 72.8 112 68.8
Dinv20601 Davidia involucrata HOM05D002488 ORTHO05D002613 9.6e-11 72.0 110 68.2
VMungo1215G0429 Vigna mungo HOM05D002488 ORTHO05D002613 9.6e-11 72.0 114 67.5
ClCG06G017390 Citrullus lanatus HOM05D002488 ORTHO05D002613 1.3e-10 71.6 121 62.0
Prupe.1G244900 Prunus persica HOM05D002488 ORTHO05D002613 1.6e-10 71.2 297 72.7
ATR0824G118 Amborella trichopoda HOM05D002488 ORTHO05D002613 2.1e-10 70.9 110 69.1
Actinidia08959 Actinidia chinensis HOM05D002488 ORTHO05D002613 2.8e-10 70.5 110 66.4
Atru.chr9.2572 Acer truncatum HOM05D002488 ORTHO05D002613 3.7e-10 70.1 119 61.3
CSS0004341 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 3.7e-10 70.1 112 67.9
Cfa019211 Carpinus fangiana HOM05D002488 ORTHO05D002613 3.7e-10 70.1 124 64.5
Ciclev10031488m.g Citrus clementina HOM05D002488 ORTHO05D002613 3.7e-10 70.1 109 57.8
Cfa009214 Carpinus fangiana HOM05D002488 ORTHO05D002613 4.8e-10 69.7 112 68.8
Gohir.D12G202100 Gossypium hirsutum HOM05D002488 ORTHO05D002613 4.8e-10 69.7 121 60.3
Gorai.005G178200 Gossypium raimondii HOM05D002488 ORTHO05D002613 4.8e-10 69.7 119 59.7
MBI04_g31204_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 4.8e-10 69.7 123 60.2
Cc11_g15780 Coffea canephora HOM05D002488 ORTHO05D002613 6.2e-10 69.3 120 63.3
arahy.Tifrunner.gnm1.ann1.ZI7BUH Arachis hypogaea HOM05D002488 ORTHO05D002613 8.2e-10 68.9 121 65.3
Potri.012G085600 Populus trichocarpa HOM05D002488 ORTHO05D002613 8.2e-10 68.9 121 62.8
TWI36G0291 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 8.2e-10 68.9 113 65.5
Prupe.8G003900 Prunus persica HOM05D002488 ORTHO05D002613 1.1e-09 68.6 121 59.5
Cpa.g.sc159.28 Carica papaya HOM05D002488 ORTHO05D002613 1.4e-09 68.2 110 64.5
Haze_07582 Corylus avellana HOM05D002488 ORTHO05D002613 1.4e-09 68.2 124 62.9
Phvul.002G149700 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 1.4e-09 68.2 114 64.9
Lj9A442T65 Lonicera japonica HOM05D002488 ORTHO05D002613 2.4e-09 67.4 115 66.1
Peaxi162Scf00117g00118 Petunia axillaris HOM05D002488 ORTHO05D002613 2.4e-09 67.4 120 47.5
QL10p006915 Quercus lobata HOM05D002488 ORTHO05D002613 2.4e-09 67.4 120 60.8
Sabra12G0061500 Salix brachista HOM05D002488 ORTHO05D002613 2.4e-09 67.4 121 60.3
Sed0021301 Sechium edule HOM05D002488 ORTHO05D002613 2.4e-09 67.4 121 62.0
Actinidia24595 Actinidia chinensis HOM05D002488 ORTHO05D002613 3.1e-09 67.0 110 65.5
Ca_04560_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 4.1e-09 66.6 110 48.2
Manes.14G060900 Manihot esculenta HOM05D002488 ORTHO05D002613 4.1e-09 66.6 119 62.2
CANSAT80G1691 Cannabis sativa HOM05D002488 ORTHO05D002613 5.3e-09 66.2 121 60.3
CsaV3_1G001020 Cucumis sativus L. HOM05D002488 ORTHO05D002613 5.3e-09 66.2 121 60.3
Eucgr.B03282 Eucalyptus grandis HOM05D002488 ORTHO05D002613 5.3e-09 66.2 124 62.1
FAN27G2309 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.3e-09 66.2 112 63.4
Hma1.2p1_2227F.1_g317490 Hydrangea macrophylla HOM05D002488 ORTHO05D002613 5.3e-09 66.2 110 67.3
Sed0014577 Sechium edule HOM05D002488 ORTHO05D002613 5.3e-09 66.2 121 62.8
Duzib205G2026 Durio zibethinus HOM05D002488 ORTHO05D002613 6.9e-09 65.9 110 65.5
Lsat_1_v5_gn_5_14360 Lactuca sativa HOM05D002488 ORTHO05D002613 6.9e-09 65.9 125 54.4
Potri.015G083800 Populus trichocarpa HOM05D002488 ORTHO05D002613 6.9e-09 65.9 120 61.7
Sabra10G0021800 Salix brachista HOM05D002488 ORTHO05D002613 6.9e-09 65.9 113 62.8
SalBow2G1298 Salvia bowleyana HOM05D002488 ORTHO05D002613 6.9e-09 65.9 113 61.9
CiPaw.05G181700 Carya illinoinensis HOM05D002488 ORTHO05D002613 9.0e-09 65.5 114 64.0
COL.COLO4_24273 Corchorus olitorius HOM05D002488 ORTHO05D002613 9.0e-09 65.5 112 64.3
FAN20G0001 Fragaria x ananassa HOM05D002488 ORTHO05D002613 9.0e-09 65.5 112 56.2
MD05G1037800 Malus domestica HOM05D002488 ORTHO05D002613 1.2e-08 65.1 121 57.9
MD10G1041600 Malus domestica HOM05D002488 ORTHO05D002613 1.2e-08 65.1 119 58.8
Psat0s3170g0040 Pisum sativum HOM05D002488 ORTHO05D002613 1.5e-08 64.7 121 62.8
AL1G24620 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 2.0e-08 64.3 113 63.7
MSTRG.11493 Avicennia marina HOM05D002488 ORTHO05D002613 2.0e-08 64.3 115 62.6
ECA233G5053 Erigeron canadensis HOM05D000669 ORTHO05D000679 2.6e-08 63.9 114 65.8
Glyma.04G188000 Glycine max HOM05D002488 ORTHO05D002613 2.6e-08 63.9 121 62.8
CDE02G2064 Ceratophyllum demersum HOM05D002488 ORTHO05D002613 3.4e-08 63.5 116 62.1
PSO017G5698 Papaver somniferum HOM05D002488 ORTHO05D002613 3.4e-08 63.5 113 61.9
Phvul.009G174300 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 3.4e-08 63.5 124 61.3
RcHm_v2.0_Chr6g0249641 Rosa chinensis HOM05D002488 ORTHO05D002613 4.5e-08 63.2 112 61.6
VMungo1309G0915 Vigna mungo HOM05D002488 ORTHO05D002613 4.5e-08 63.2 121 62.8
CDE05G0902 Ceratophyllum demersum HOM05D000479 ORTHO05D002613 5.8e-08 62.8 117 61.5
Glyma.01G025600 Glycine max HOM05D002488 ORTHO05D002613 5.8e-08 62.8 114 61.4
Gohir.A12G199300 Gossypium hirsutum HOM05D002488 ORTHO05D002613 5.8e-08 62.8 121 59.5
Manes.06G109900 Manihot esculenta HOM05D002488 ORTHO05D002613 5.8e-08 62.8 119 59.7
Ciclev10019747m.g Citrus clementina HOM05D002488 ORTHO05D002613 7.6e-08 62.4 101 68.3
FvH4_2g00400 Fragaria vesca HOM05D002488 ORTHO05D002613 7.6e-08 62.4 112 61.6
Gorai.008G217100 Gossypium raimondii HOM05D002488 ORTHO05D002613 7.6e-08 62.4 121 57.9
PGR083G2220 Punica granatum HOM05D002488 ORTHO05D002613 7.6e-08 62.4 120 60.0
Sp1g11530 Schrenkiella parvula HOM05D002488 ORTHO05D002613 7.6e-08 62.4 106 67.0
Lalb_Chr08g0236741 Lupinus albus HOM05D002488 ORTHO05D002613 1.0e-07 62.0 121 62.0
PSO478G1227 Papaver somniferum HOM05D002488 ORTHO05D002613 1.0e-07 62.0 113 58.4
Carub.0001s1273 Capsella rubella HOM05D002488 ORTHO05D002613 1.3e-07 61.6 106 66.0
CsaV3_5G031080 Cucumis sativus L. HOM05D002488 ORTHO05D002613 1.3e-07 61.6 113 66.4
Thhalv10007575m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 1.3e-07 61.6 106 66.0
HanXRQChr02g0035791 Helianthus annuus HOM05D002488 ORTHO05D002613 1.3e-07 61.6 112 62.5
Aqoxy3G01216 Aquilegia oxysepala HOM05D002488 ORTHO05D002613 1.7e-07 61.2 103 69.9
AT1G12970 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 1.7e-07 61.2 106 66.0
BcaB08g34236 Brassica carinata HOM05D002488 ORTHO05D002613 1.7e-07 61.2 106 67.9
Ca_14275_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 1.7e-07 61.2 139 56.1
Eucgr.B00224 Eucalyptus grandis HOM05D002488 ORTHO05D002613 1.7e-07 61.2 111 62.2
FAN19G3027 Fragaria x ananassa HOM05D002488 ORTHO05D002613 1.7e-07 61.2 112 59.8
Medtr4g105010 Medicago truncatula HOM05D002488 ORTHO05D002613 1.7e-07 61.2 121 59.5
TWI39G1221 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 1.7e-07 61.2 120 60.0
BcaC03g17369 Brassica carinata HOM05D002488 ORTHO05D002613 2.2e-07 60.8 119 58.8
Lalb_Chr23g0273331 Lupinus albus HOM05D002488 ORTHO05D002613 2.2e-07 60.8 121 61.2
TWI23G0090 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 2.2e-07 60.8 122 59.0
C08p47010 Brassica napus HOM05D000048 ORTHO05D000445 2.9e-07 60.5 106 67.0
BolC8t52238H Brassica oleracea HOM05D002488 ORTHO05D002613 2.9e-07 60.5 106 67.0
Glyma.05G041400 Glycine max HOM05D002488 ORTHO05D002613 2.9e-07 60.5 121 60.3
COL.COLO4_35718 Corchorus olitorius HOM05D002488 ORTHO05D002613 3.8e-07 60.1 118 58.5
MELO3C026254.2 Cucumis melo HOM05D002488 ORTHO05D002613 3.8e-07 60.1 121 56.2
FAN24G3477 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.8e-07 60.1 112 60.7
THA.LOC104825664 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 3.8e-07 60.1 107 64.5
Thecc.02G260400 Theobroma cacao HOM05D002488 ORTHO05D002613 3.8e-07 60.1 292 70.9
GSVIVG01007654001 Vitis vinifera HOM05D002488 ORTHO05D002613 3.8e-07 60.1 50 48.0
CARHR013310 Cardamine hirsuta HOM05D002488 ORTHO05D002613 5.0e-07 59.7 104 65.4
Psat4g060240 Pisum sativum HOM05D002488 ORTHO05D002613 6.5e-07 59.3 111 62.2
Carub.0006s0475 Capsella rubella HOM05D002488 ORTHO05D002613 8.4e-07 58.9 115 61.7
Cc04_g11610 Coffea canephora HOM05D002488 ORTHO05D002613 8.4e-07 58.9 110 64.5
MELO3C011948.2 Cucumis melo HOM05D002488 ORTHO05D002613 8.4e-07 58.9 113 64.6
Lj4g0015296 Lotus japonicus HOM05D002488 ORTHO05D002613 8.4e-07 58.9 121 59.5
Medtr3g076990 Medicago truncatula HOM05D002488 ORTHO05D002613 8.4e-07 58.9 121 60.3
Nitab4.5_0001793g0070 Nicotiana tabacum HOM05D002488 ORTHO05D002613 8.4e-07 58.9 121 58.7
arahy.Tifrunner.gnm1.ann1.A1CNSV Arachis hypogaea HOM05D002488 ORTHO05D002613 1.1e-06 58.5 121 52.1
BcaNung06796 Brassica carinata HOM05D002488 ORTHO05D002613 1.1e-06 58.5 115 60.0
A09p63500 Brassica napus HOM05D000048 ORTHO05D000445 1.1e-06 58.5 106 66.0
A10p30520 Brassica napus HOM05D002488 ORTHO05D002613 1.1e-06 58.5 115 60.0
C09p70980 Brassica napus HOM05D002488 ORTHO05D002613 1.1e-06 58.5 115 60.0
BolC9t59862H Brassica oleracea HOM05D002488 ORTHO05D002613 1.1e-06 58.5 115 60.0
BraA10t45093Z Brassica rapa HOM05D002488 ORTHO05D002613 1.1e-06 58.5 115 60.0
VMungo1215G1015 Vigna mungo HOM05D002488 ORTHO05D002613 1.1e-06 58.5 121 55.4
PGR102G2271 Punica granatum HOM05D002488 ORTHO05D002613 1.4e-06 58.2 124 57.3
TPR.G38796 Trifolium pratense HOM05D002488 ORTHO05D002613 1.4e-06 58.2 104 47.1
CARHR207400 Cardamine hirsuta HOM05D002488 ORTHO05D002613 1.9e-06 57.8 117 59.0
Lalb_Chr13g0297591 Lupinus albus HOM05D002488 ORTHO05D002613 1.9e-06 57.8 123 61.0
MBI01_g17244_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 1.9e-06 57.8 111 45.9
Os04g0476700 Oryza sativa ssp. japonica HOM05D002488 ORTHO05D002613 1.9e-06 57.8 103 67.0
Thhalv10013295m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 2.5e-06 57.4 115 60.0
QL05p034566 Quercus lobata HOM05D002488 ORTHO05D002613 2.5e-06 57.4 59 44.1
Sp6g37050 Schrenkiella parvula HOM05D002488 ORTHO05D002613 2.5e-06 57.4 115 60.0
HanXRQChr05g0154171 Helianthus annuus HOM05D002488 ORTHO05D002613 3.2e-06 57.0 123 52.0
AT5G05850 Arabidopsis thaliana HOM05D002488 ORTHO05D002613 4.2e-06 56.6 115 60.0
BraA09t41700Z Brassica rapa HOM05D002488 ORTHO05D002613 4.2e-06 56.6 106 66.0
FvH4_5g35210 Fragaria vesca HOM05D002488 ORTHO05D002613 4.2e-06 56.6 317 69.1
Lsat_1_v5_gn_1_27821 Lactuca sativa HOM05D002488 ORTHO05D002613 4.2e-06 56.6 107 64.5
SGA_v2.0_scaffold25G10801 Striga asiatica HOM05D002488 ORTHO05D002613 4.2e-06 56.6 93 71.0
Aa31LG11G6860 Aethionema arabicum HOM05D002488 ORTHO05D002613 5.5e-06 56.2 119 58.8
DCAR_016455 Daucus carota HOM05D002488 ORTHO05D002613 5.5e-06 56.2 65 43.1
ECA246G1629 Erigeron canadensis HOM05D002176 ORTHO05D002598 5.5e-06 56.2 123 56.1
Thhalv10004130m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 5.5e-06 56.2 115 60.9
SHI17281 Sapria himalayana HOM05D002488 ORTHO05D002613 5.5e-06 56.2 95 50.5
PGSC0003DMG400018117 Solanum tuberosum HOM05D002488 ORTHO05D002613 5.5e-06 56.2 121 59.5
AL6G15760 Arabidopsis lyrata HOM05D002488 ORTHO05D002613 7.2e-06 55.8 115 60.0
PSO339G4325 Papaver somniferum HOM05D002488 ORTHO05D002613 7.2e-06 55.8 114 61.4
RcHm_v2.0_Chr7g0236341 Rosa chinensis HOM05D002488 ORTHO05D002613 7.2e-06 55.8 122 54.1
Sp2g15610 Schrenkiella parvula HOM05D002488 ORTHO05D002613 7.2e-06 55.8 111 62.2
THA.LOC104816567 Tarenaya hassleriana HOM05D002488 ORTHO05D002613 7.2e-06 55.8 115 58.3
CARHR085880 Cardamine hirsuta HOM05D002488 ORTHO05D002613 9.3e-06 55.5 117 65.0


User provided reference genes

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