Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 2004.6 998 100.0
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1933.7 1006 96.7
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1919.8 998 95.9
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1902.1 998 95.8
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1823.1 998 90.7
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1779.2 1038 86.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1758.8 998 87.2
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1755.7 994 88.2
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1755.7 998 86.6
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1754.2 998 87.2
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1745.7 998 87.3
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1736.5 998 85.8
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1735.7 999 86.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1731.1 998 85.3
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1728.8 995 86.1
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1723.4 998 85.4
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1721.4 994 85.7
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1716.8 998 84.7
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1716.8 998 85.0
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1715.3 998 84.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1714.1 998 85.2
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1711.8 998 84.8
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1710.3 998 85.2
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1709.9 998 84.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1709.5 998 84.7
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1709.5 999 84.7
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1706.0 998 84.6
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1704.1 999 84.3
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1696.0 1022 83.0
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1694.1 1022 82.8
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1691.0 999 83.5
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1689.1 998 83.6
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1687.2 1005 83.5
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1686.4 1004 84.0
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1681.8 999 83.5
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 1024 82.5
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1680.6 1093 77.8
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1678.7 998 83.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 1000 83.6
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1677.9 998 83.2
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1677.5 1022 82.0
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1673.3 996 83.2
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1671.8 998 82.8
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1671.0 1001 82.7
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1667.5 998 82.3
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1666.0 1000 82.8
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1666.0 999 82.8
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 998 82.4
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1657.1 1014 81.4
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 995 81.6
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1650.6 998 82.1
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1650.2 995 81.2
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1649.4 996 81.5
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1649.0 999 81.2
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1647.1 999 81.0
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 1086 77.5
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1645.9 1000 81.1
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1644.0 995 81.8
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1644.0 998 82.9
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1642.5 1001 80.8
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1636.7 999 80.7
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1634.0 998 82.3
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1633.6 995 81.1
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1630.9 1011 79.6
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1630.2 1000 80.0
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 999 80.3
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1629.8 1002 80.6
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1626.3 1001 80.2
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 999 79.9
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1620.9 998 81.8
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1616.3 999 81.4
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1615.5 1014 78.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1615.5 1004 79.6
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1612.4 1007 80.0
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1607.0 1014 78.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1606.7 941 84.4
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 998 79.8
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1598.2 1016 77.9
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1597.8 998 79.9
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 1036 78.8
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1592.4 946 83.8
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1585.9 996 79.0
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1578.1 998 78.7
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1563.5 1049 74.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1560.0 1026 77.0
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1547.3 1004 75.7
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1542.7 998 78.8
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1535.4 938 82.7
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1522.3 1004 80.4
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1511.1 998 76.4
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1479.5 905 80.7
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1458.4 1002 72.9
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1453.3 799 90.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1448.0 826 88.1
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1447.6 854 83.5
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1429.8 1004 71.8
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1411.4 771 91.8
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1379.0 794 86.0
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1345.5 781 85.8
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1344.7 865 78.5
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1338.9 803 84.3
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1325.5 961 70.3
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1303.9 801 80.9
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1286.6 772 83.3
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1203.3 791 77.9
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1193.7 991 60.1
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1190.3 1008 60.1
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1189.5 771 79.1
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.5e-301 1039.6 985 52.8
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.9e-296 1022.7 652 79.4
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.5e-296 1021.1 620 81.5
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 5.7e-293 1011.1 567 90.7
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 9.8e-293 1010.4 799 63.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 9.2e-291 1003.8 674 76.1
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.3e-257 893.6 583 76.7
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.3e-252 877.1 519 82.5
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 9.6e-248 860.9 620 68.2
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 8.1e-247 857.8 526 82.5
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.9e-204 716.5 417 81.3
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 1.4e-174 617.8 336 89.3
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.1e-158 565.1 337 83.7
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.7e-143 514.6 282 88.7
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 1.2e-125 455.3 1091 30.7
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 1.8e-121 441.4 249 87.6
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 5.5e-110 403.3 230 81.7
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 6.9e-105 386.3 231 78.8
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 6.5e-103 379.8 277 72.9
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.6e-101 375.2 1046 27.5
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 5.1e-100 370.2 1278 27.1
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 8.8e-100 369.4 204 86.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.2e-95 354.8 212 83.5
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 1.6e-93 348.6 207 79.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 9.7e-91 339.3 231 71.0
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 5.2e-84 317.0 178 83.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.8e-81 308.5 198 75.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 2.0e-75 288.5 302 52.0
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.6e-69 268.9 153 81.0
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 3.6e-69 267.7 441 38.8
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 3.3e-62 244.6 153 77.8
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.3e-58 232.6 127 82.7
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.0e-48 198.7 136 67.6
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 8.6e-47 193.4 174 67.2
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 2.6e-43 181.8 121 70.2
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.6e-40 172.6 172 55.8
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-39 169.5 111 75.7
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.9e-39 167.9 108 76.9
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.1e-36 158.3 91 82.4
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 1.3e-31 142.9 88 77.3
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.3e-30 137.1 72 94.4
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-29 136.3 98 69.4
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.0e-27 129.0 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 3.4e-27 128.3 127 59.8
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-26 125.9 75 81.3
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-25 122.9 81 70.4
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 5.4e-25 120.9 84 73.8
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.0e-23 115.2 89 66.3
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.9e-23 114.8 80 81.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.1e-23 114.4 88 67.0
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 2.9e-18 98.6 87 54.0
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.9e-17 95.9 51 86.3
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.9e-17 95.9 54 83.3
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-15 89.0 117 40.2
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-13 82.4 52 65.4
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 4.8e-13 81.3 160 35.0
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.5e-11 76.3 232 23.7
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 3.0e-07 62.0 45 66.7
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.1e-06 60.1 31 83.9
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 4.3e-06 58.2 47 63.8


User provided reference genes

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