Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.2e-147 525.0 259 100.0
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.4e-129 466.5 284 84.2
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.2e-103 379.4 280 67.5
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.2e-103 379.4 280 67.5
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 2.4e-102 375.9 280 66.4
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 8.6e-100 367.5 270 68.1
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.4e-97 359.4 280 63.2
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 4.0e-97 358.6 280 63.9
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.5e-96 356.7 281 63.3
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 7.6e-96 354.4 277 64.6
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 9.9e-96 354.0 275 65.1
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.3e-95 353.6 277 64.3
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 2.9e-95 352.4 305 60.3
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 3.8e-95 352.1 277 63.5
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.9e-94 349.7 274 63.5
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 3.2e-94 349.0 269 65.1
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 3.9e-92 342.0 271 62.0
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.1e-91 340.5 275 60.0
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.1e-91 340.5 280 60.7
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 1.5e-91 340.1 275 60.4
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.9e-91 339.7 277 61.7
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 3.3e-91 339.0 273 61.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 3.3e-91 339.0 281 60.9
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 7.3e-91 337.8 279 60.2
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 9.6e-91 337.4 278 59.7
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 2.1e-90 336.3 276 62.3
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 8.1e-90 334.3 275 62.5
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.1e-89 334.0 278 61.2
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 1.1e-89 334.0 279 58.4
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 1.1e-89 334.0 275 62.5
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 1.8e-89 333.2 269 62.5
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.1e-89 332.4 275 62.5
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 4.4e-88 328.6 287 60.6
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 9.9e-88 327.4 276 61.6
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.7e-87 326.6 278 60.1
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 2.2e-87 326.2 276 61.6
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 8.4e-87 324.3 278 57.6
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 5.4e-86 321.6 273 60.4
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 7.1e-86 321.2 275 59.3
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 9.3e-86 320.9 273 58.6
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 1.2e-85 320.5 271 57.2
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.2e-85 320.5 260 61.2
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.5e-85 318.9 276 56.9
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 3.5e-85 318.9 273 60.1
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 4.6e-85 318.5 271 61.3
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 7.8e-85 317.8 266 59.4
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.3e-84 317.0 271 59.8
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 1.7e-84 316.6 276 59.1
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.7e-84 316.6 272 59.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 5.1e-84 315.1 263 59.3
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 6.6e-84 314.7 267 59.2
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 8.7e-84 314.3 276 56.2
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 1.5e-83 313.5 276 56.5
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.9e-83 313.2 280 57.5
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.5e-83 312.8 266 60.5
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 4.3e-83 312.0 268 59.0
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 1.3e-82 310.5 266 59.0
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.8e-82 309.3 270 58.5
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 8.1e-82 307.8 276 54.7
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 2.4e-81 306.2 269 59.1
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-81 305.4 267 58.4
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 5.3e-81 305.1 278 52.9
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.5e-80 303.5 262 56.9
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 1.3e-79 300.4 248 61.3
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 2.2e-79 299.7 277 56.0
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 6.4e-79 298.1 269 55.0
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.1e-78 297.4 249 59.4
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 1.4e-78 297.0 266 54.9
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.9e-78 296.6 251 59.4
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 2.4e-78 296.2 280 54.6
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 4.2e-78 295.4 280 54.3
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.6e-77 293.5 280 53.2
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.1e-77 293.1 269 54.6
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.7e-77 292.7 280 53.2
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 2.7e-77 292.7 288 52.4
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.6e-77 292.0 264 54.5
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.1e-75 287.3 262 53.1
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 4.3e-75 285.4 280 53.2
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.8e-74 282.7 250 59.6
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 2.8e-74 282.7 278 53.2
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 6.2e-74 281.6 151 91.4
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 8.1e-74 281.2 281 52.7
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 8.1e-74 281.2 262 53.4
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-73 280.0 276 52.5
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.8e-73 280.0 276 52.2
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.8e-73 280.0 276 52.5
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.8e-73 280.0 276 52.5
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 2.4e-73 279.6 276 52.2
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 3.1e-73 279.3 331 46.8
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 3.1e-73 279.3 276 52.2
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 2.0e-72 276.6 278 52.9
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 9.9e-72 274.2 273 52.7
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 2.2e-71 273.1 261 52.1
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 6.4e-71 271.6 268 53.7
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 4.6e-69 265.4 254 53.1
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.0e-68 262.7 278 50.4
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.6e-66 256.9 155 79.4
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.4e-65 253.8 205 63.4
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.5e-64 250.4 148 81.1
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.3e-58 230.7 255 47.8
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 2.7e-53 213.0 154 70.1
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.6e-45 186.0 146 58.2
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 2.6e-43 179.9 213 48.4
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.1e-41 172.9 128 67.2
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.5e-39 165.2 113 75.2
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 3.6e-37 159.5 111 72.1
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.3e-36 156.8 111 67.6
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.0e-31 141.4 217 39.2
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.9e-31 139.8 109 64.2
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 5.0e-31 139.0 98 72.4
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 5.0e-31 139.0 251 35.5
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.6e-29 134.0 119 56.3
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.4e-28 131.0 246 33.3
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 2.6e-27 126.7 112 60.7
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 3.4e-27 126.3 249 30.1
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 1.3e-26 124.4 251 30.3
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 6.3e-26 122.1 237 30.4
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 4.1e-25 119.4 252 31.0
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 9.1e-25 118.2 199 41.7
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 2.5e-22 110.2 104 51.0
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 4.2e-22 109.4 105 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 8.0e-21 105.1 253 27.3
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 1.3e-18 97.8 96 50.0
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 9.1e-17 91.7 58 75.9
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 7.7e-16 88.6 81 54.3
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 3.4e-11 73.2 66 59.1
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 2.2e-10 70.5 38 84.2
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.8e-10 70.1 65 58.5
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 1.1e-09 68.2 38 81.6
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 3.2e-09 66.6 47 63.8
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 5.4e-09 65.9 38 78.9
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 7.0e-09 65.5 38 78.9
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 7.8e-08 62.0 40 75.0
Lsat_1_v5_gn_1_127740 Lactuca sativa HOM05D001044 ORTHO05D008486 1.9e-06 57.4 39 69.2


User provided reference genes

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