Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.8e-154 549.3 268 100.0
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 1.9e-140 502.7 267 91.0
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 8.5e-136 487.3 258 91.5
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.1e-134 482.6 262 90.1
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 7.9e-134 480.7 264 87.9
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 8.8e-133 477.2 269 87.7
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 8.8e-133 477.2 269 87.4
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 3.3e-132 475.3 268 87.3
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.1e-130 470.3 260 88.8
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 2.4e-130 469.2 269 85.1
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 9.1e-130 467.2 266 85.7
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.0e-129 466.1 269 86.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 3.4e-129 465.3 266 86.5
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 7.7e-129 464.2 258 88.8
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 1.3e-128 463.4 267 85.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 3.8e-128 461.8 268 85.8
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 3.8e-128 461.8 260 86.9
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 5.0e-128 461.5 266 87.6
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 8.5e-128 460.7 267 85.0
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.4e-127 459.9 267 85.0
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 1.4e-127 459.9 266 85.0
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 5.5e-127 458.0 260 86.5
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 7.2e-127 457.6 256 87.9
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 4.7e-126 454.9 265 84.9
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 7.9e-126 454.1 259 86.9
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 3.0e-125 452.2 267 84.6
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 3.9e-125 451.8 266 85.0
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 5.1e-125 451.4 258 85.3
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 6.7e-125 451.1 260 85.0
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 8.8e-125 450.7 251 88.8
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-124 450.3 254 87.0
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-124 450.3 254 87.0
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.1e-124 450.3 254 87.0
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.5e-124 449.9 251 87.3
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 2.6e-124 449.1 257 86.0
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 3.3e-124 448.7 266 82.7
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 4.4e-124 448.4 268 82.8
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.3e-123 446.8 269 83.3
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.3e-123 446.8 273 81.3
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.7e-123 446.4 268 83.2
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.2e-123 444.1 267 82.4
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.1e-122 443.7 265 81.5
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.1e-122 443.7 263 82.1
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 3.1e-122 442.2 275 81.1
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.1e-122 442.2 247 85.8
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-122 442.2 246 87.0
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 4.1e-122 441.8 248 85.9
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 7.0e-122 441.0 264 82.6
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 7.0e-122 441.0 263 81.4
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 2.6e-121 439.1 270 80.7
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 3.5e-121 438.7 308 73.7
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 4.5e-121 438.3 263 81.0
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 5.9e-121 438.0 263 81.0
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.0e-120 437.2 270 80.4
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.3e-120 436.8 286 76.2
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.3e-120 436.8 349 67.0
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 1.3e-120 436.8 237 86.5
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.7e-120 436.4 230 89.1
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.7e-120 436.4 263 80.6
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 2.2e-120 436.0 264 80.3
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.2e-120 436.0 261 82.0
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.9e-120 435.6 269 80.7
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 5.0e-120 434.9 262 81.3
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 8.5e-120 434.1 234 86.8
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 3.2e-119 432.2 268 80.6
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.2e-119 431.8 267 80.1
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 4.2e-119 431.8 249 85.5
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.2e-119 431.8 243 86.0
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 2.1e-118 429.5 231 88.3
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 6.1e-118 427.9 259 80.3
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 8.0e-118 427.6 259 79.9
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.4e-117 426.8 241 88.0
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.4e-117 426.8 264 80.7
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 6.7e-117 424.5 260 82.7
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 6.7e-117 424.5 249 83.5
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 2.6e-116 422.5 264 79.2
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.6e-116 422.5 249 84.7
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 5.7e-116 421.4 252 81.0
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 7.4e-116 421.0 258 78.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 9.7e-116 420.6 230 86.1
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.7e-115 419.9 247 81.8
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 2.2e-115 419.5 333 65.8
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 2.8e-115 419.1 339 65.5
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 4.8e-115 418.3 265 81.1
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.8e-114 416.4 342 64.6
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 4.1e-114 415.2 260 80.8
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 7.0e-114 414.5 252 83.3
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 9.1e-114 414.1 254 81.5
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.6e-113 413.3 252 81.3
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.9e-112 409.1 268 78.7
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 6.5e-112 407.9 245 81.6
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 6.5e-112 407.9 245 81.6
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.2e-110 403.7 250 80.0
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 7.5e-108 394.4 260 78.5
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 9.7e-108 394.0 267 71.5
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.3e-107 391.3 226 79.2
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.3e-106 388.3 260 73.5
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.0e-104 381.7 270 72.2
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.2e-103 378.6 225 78.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 4.2e-103 378.6 225 78.2
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 5.2e-101 371.7 263 70.7
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.6e-100 369.4 266 71.4
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.2e-99 366.3 287 65.2
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 3.6e-94 349.0 210 84.8
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.8e-93 346.7 213 82.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 4.4e-92 342.0 211 82.0
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.3e-83 313.9 155 91.0
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 9.5e-79 297.7 168 88.1
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 3.6e-78 295.8 149 89.3
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.2e-77 292.0 209 70.3
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.2e-70 270.8 137 87.6
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 6.4e-67 258.5 168 77.4
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 3.5e-65 252.7 144 82.6
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 3.9e-64 249.2 274 51.8
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 8.6e-64 248.1 152 81.6
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 9.5e-63 244.6 153 80.4
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.2e-60 237.7 218 51.4
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 2.0e-60 236.9 175 68.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 6.0e-57 225.3 258 46.9
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 8.1e-54 214.9 153 74.5
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.8e-53 213.8 170 68.2
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 9.0e-53 211.5 112 84.8
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 5.8e-52 208.8 143 77.6
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.4e-50 203.4 96 95.8
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 3.5e-49 199.5 102 89.2
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 1.1e-47 194.5 152 70.4
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 5.6e-47 192.2 133 80.5
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.5e-44 184.1 97 88.7
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.5e-44 184.1 197 54.3
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 3.4e-44 183.0 128 81.2
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 7.1e-42 175.3 96 82.3
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 6.0e-41 172.2 118 78.8
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 7.9e-41 171.8 96 82.3
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.0e-40 171.4 130 63.1
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 3.7e-38 162.9 113 77.0
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 8.1e-38 161.8 84 85.7
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.0e-37 159.5 86 87.2
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.2e-36 157.9 82 85.4
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.2e-33 147.9 80 87.5
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 7.9e-33 145.2 80 86.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 5.1e-32 142.5 80 85.0
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.4e-27 125.2 118 61.9
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.1e-26 124.8 84 73.8
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.6e-25 120.9 77 79.2
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 7.9e-25 118.6 146 51.4
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 6.3e-22 109.0 74 66.2
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 9.0e-21 105.1 90 72.2
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.2e-20 104.8 60 85.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 1.2e-20 104.8 68 67.6
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.3e-19 101.3 89 69.7
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.2e-17 94.7 91 67.0
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.7e-14 84.3 63 61.9
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 5.9e-12 75.9 42 83.3
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 2.2e-11 73.9 72 66.7


User provided reference genes

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