Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.2e-255 885.9 430 100.0
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 6.7e-214 747.3 428 83.9
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.4e-210 734.9 428 83.4
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 9.9e-210 733.4 428 83.2
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 5.3e-203 711.1 455 77.1
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 7.7e-194 680.6 429 77.9
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.0e-193 677.9 427 76.8
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 3.2e-192 675.2 429 77.9
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.1e-179 633.6 421 75.5
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 5.3e-179 631.3 428 74.3
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 3.5e-178 628.6 421 74.8
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 7.7e-178 627.5 428 72.7
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.9e-176 622.9 430 71.4
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 2.7e-175 619.0 431 72.9
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.4e-174 616.7 429 70.2
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.1e-173 613.6 429 73.4
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.6e-173 612.5 424 72.2
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.7e-172 609.8 428 69.9
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 4.5e-170 601.7 427 68.6
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 2.2e-169 599.4 423 69.7
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 3.8e-169 598.6 423 69.7
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.5e-168 595.9 427 70.5
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 3.6e-167 592.0 421 69.8
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.6e-167 592.0 428 68.0
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.6e-167 592.0 431 68.0
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 4.7e-167 591.7 434 68.2
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 1.8e-166 589.7 432 67.4
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.0e-166 589.0 427 69.1
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 4.0e-166 588.6 427 68.9
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.2e-166 588.2 427 69.1
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 8.8e-166 587.4 427 68.9
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-165 586.6 427 68.6
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 7.5e-165 584.3 419 66.6
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.3e-164 583.6 419 65.6
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.3e-164 583.6 419 65.6
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 6.3e-164 581.3 431 67.1
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.4e-163 580.1 428 65.9
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.8e-163 579.7 426 68.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 2.4e-163 579.3 428 67.1
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 5.3e-163 578.2 428 67.1
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 7.0e-163 577.8 433 67.2
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 2.7e-162 575.9 428 66.6
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 3.5e-162 575.5 428 64.0
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 3.5e-162 575.5 435 67.1
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 4.5e-162 575.1 424 65.8
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 7.7e-162 574.3 429 66.0
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.3e-161 573.5 431 67.1
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.9e-161 572.4 419 65.2
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.0e-161 571.6 428 65.7
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 6.5e-161 571.2 427 67.0
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 6.5e-161 571.2 428 64.3
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 6.5e-161 571.2 428 65.0
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 8.5e-161 570.9 427 66.7
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 8.5e-161 570.9 419 65.2
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.1e-160 570.5 430 67.9
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.5e-160 570.1 423 66.7
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 2.7e-159 565.8 430 66.0
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 2.3e-158 562.8 428 65.7
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 3.0e-158 562.4 428 65.7
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 4.0e-158 562.0 423 64.5
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 5.2e-158 561.6 422 66.8
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.5e-157 560.1 419 66.3
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.0e-157 559.7 400 69.2
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 9.8e-157 557.4 419 66.3
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.7e-156 556.6 419 66.1
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.8e-156 555.8 481 58.6
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.8e-156 555.1 427 64.4
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 6.3e-156 554.7 427 64.2
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.1e-155 553.9 428 63.8
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-155 553.9 427 64.2
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.4e-155 553.5 427 65.8
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 3.1e-155 552.4 434 64.5
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 9.1e-155 550.8 399 67.7
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 3.5e-154 548.9 497 56.1
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.5e-154 548.9 427 62.8
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 4.5e-154 548.5 399 66.7
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.0e-153 547.4 433 60.7
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 4.2e-152 542.0 391 66.2
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 9.5e-152 540.8 536 54.7
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.1e-151 539.7 429 64.3
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 2.8e-151 539.3 424 62.3
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.8e-150 536.6 470 60.0
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 8.9e-150 534.3 402 65.9
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 7.5e-149 531.2 525 53.0
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.2e-147 524.2 346 74.6
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 9.2e-147 524.2 346 74.6
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 2.7e-146 522.7 422 60.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 3.5e-146 522.3 427 58.3
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 1.3e-145 520.4 420 59.8
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 2.3e-145 519.6 381 67.7
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 2.9e-145 519.2 428 59.8
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 2.5e-144 516.2 431 60.1
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 4.3e-144 515.4 429 61.1
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 7.3e-144 514.6 427 57.6
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 9.5e-144 514.2 428 61.2
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.9e-139 500.0 461 54.4
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 5.0e-137 491.9 429 58.3
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.5e-136 489.6 424 56.8
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 1.6e-135 486.9 425 56.7
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 2.6e-133 479.6 423 57.9
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 9.8e-133 477.6 430 54.9
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 1.7e-132 476.9 448 53.3
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 9.2e-131 471.1 425 55.5
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 1.6e-130 470.3 428 54.9
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.5e-128 463.0 428 53.7
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 3.3e-128 462.6 457 51.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 4.7e-127 458.8 428 53.0
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 4.7e-127 458.8 428 53.0
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 1.1e-126 457.6 428 53.0
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.1e-126 457.6 428 53.3
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.5e-112 410.6 430 53.5
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.8e-110 403.7 428 50.9
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 3.1e-110 402.9 434 47.2
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 4.2e-107 392.5 430 48.6
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.9e-104 383.6 302 63.9
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 4.8e-103 379.0 437 46.0
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.5e-101 374.0 278 66.2
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 8.4e-100 368.2 430 44.7
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.1e-99 367.9 170 98.2
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 7.6e-93 345.1 426 46.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.4e-85 319.7 426 40.4
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.1e-82 310.5 141 97.9
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.9e-80 303.9 144 96.5
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 2.0e-77 293.9 157 83.4
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 4.8e-71 272.7 538 33.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 7.4e-56 222.2 121 78.5
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.0e-52 209.5 91 98.9
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 4.2e-51 206.5 200 52.0
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 2.8e-39 167.2 139 60.4
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.6e-29 134.8 78 76.9
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.7e-29 134.0 73 87.7
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.7e-29 134.0 73 87.7
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.6e-26 124.8 66 83.3
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 4.4e-24 116.7 59 84.7
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.8e-24 116.3 99 55.6
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 2.0e-21 107.8 68 77.9
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.3e-17 94.4 62 77.4
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 2.6e-16 90.9 178 33.7
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 7.5e-16 89.4 74 62.2
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.1e-14 85.5 75 58.7


User provided reference genes

Program Settings