Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.9e-228 795.4 375 100.0
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.0e-227 790.4 375 99.5
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 6.7e-202 707.2 375 85.6
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 1.5e-201 706.1 375 86.1
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.5e-201 705.3 372 86.8
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 9.0e-199 696.8 385 84.9
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 1.3e-197 693.0 372 83.9
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 2.8e-192 675.2 371 82.2
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 6.9e-191 670.6 374 80.2
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 6.9e-191 670.6 373 80.7
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.2e-190 669.8 372 82.3
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 5.8e-190 667.5 373 80.2
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.3e-189 666.4 372 81.7
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.9e-189 665.2 373 82.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 3.8e-189 664.8 372 81.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 8.4e-189 663.7 372 79.0
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.1e-188 663.3 373 80.7
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.1e-188 663.3 373 78.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.5e-188 661.0 372 79.6
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 5.5e-188 661.0 373 80.4
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.2e-187 659.8 373 79.6
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 6.0e-187 657.5 371 80.1
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.0e-186 656.8 374 77.8
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.3e-186 656.4 373 78.3
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 3.0e-186 655.2 373 79.4
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 3.0e-186 655.2 373 78.3
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 6.7e-186 654.1 373 78.8
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 8.7e-186 653.7 372 79.6
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 1.9e-185 652.5 373 79.1
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.5e-185 652.1 391 75.7
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 3.3e-185 651.7 372 79.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 3.3e-185 651.7 368 78.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 4.3e-185 651.4 372 78.8
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.7e-184 648.3 371 79.2
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 6.3e-184 647.5 373 77.7
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 8.2e-184 647.1 382 81.4
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.1e-183 646.7 372 78.8
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.1e-183 646.7 373 78.0
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 4.1e-183 644.8 373 78.3
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 9.0e-183 643.7 373 77.5
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.2e-182 643.3 373 76.9
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 4.5e-182 641.3 373 76.1
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 4.5e-182 641.3 379 75.5
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 2.2e-181 639.0 372 77.7
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 5.0e-181 637.9 371 77.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.5e-181 637.5 371 77.9
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 1.1e-180 636.7 371 75.7
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 3.2e-180 635.2 371 75.5
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 7.2e-180 634.0 372 75.5
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 9.4e-180 633.6 371 75.2
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.2e-179 633.3 372 75.3
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.2e-179 633.3 373 74.0
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.6e-179 632.9 371 75.5
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.7e-179 632.1 372 75.8
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 2.7e-179 632.1 372 76.3
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 6.1e-179 630.9 372 75.3
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.0e-178 630.2 372 75.8
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 1.4e-178 629.8 370 77.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 5.1e-178 627.9 370 75.1
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 5.1e-178 627.9 372 74.2
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.5e-177 626.3 373 73.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.3e-177 625.2 373 74.0
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 7.4e-177 624.0 372 73.9
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 7.4e-177 624.0 372 75.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.7e-176 622.9 373 74.5
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.7e-176 622.9 373 72.7
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 2.2e-176 622.5 380 73.7
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.1e-175 620.2 373 75.1
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 2.4e-175 619.0 373 71.8
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.4e-175 619.0 372 74.5
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 3.1e-175 618.6 372 73.7
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 5.3e-175 617.8 373 73.7
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 9.1e-175 617.1 374 73.0
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.0e-174 615.9 372 75.0
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 1.0e-173 613.6 374 73.5
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 5.0e-173 611.3 372 73.9
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 6.5e-173 610.9 367 72.8
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 3.2e-172 608.6 382 72.8
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 4.2e-172 608.2 369 73.2
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 9.4e-172 607.1 383 72.8
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 1.2e-171 606.7 366 72.4
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 2.7e-171 605.5 369 71.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 4.7e-171 604.7 367 72.5
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 7.9e-171 604.0 424 68.2
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.0e-170 603.6 370 71.9
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.4e-170 603.2 372 72.3
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 1.8e-170 602.8 368 72.6
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 5.1e-170 601.3 368 72.6
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 8.8e-170 600.5 370 71.4
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.1e-169 600.1 370 71.4
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 1.5e-169 599.7 460 61.3
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 3.3e-169 598.6 370 70.5
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.7e-168 596.3 348 77.3
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 1.7e-168 596.3 375 71.2
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 8.2e-168 594.0 371 70.9
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.1e-167 593.6 401 66.6
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 2.4e-167 592.4 372 72.8
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 3.1e-167 592.0 367 71.4
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 5.3e-167 591.3 373 70.2
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 7.0e-167 590.9 367 71.1
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.3e-165 586.6 377 71.4
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 2.9e-165 585.5 405 66.9
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 5.5e-164 581.3 346 75.4
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 7.4e-161 570.9 371 66.8
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 4.8e-160 568.2 367 68.9
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-159 567.0 374 67.4
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 1.2e-158 563.5 368 69.3
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.9e-157 558.9 406 64.5
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 3.8e-157 558.5 371 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 3.3e-153 545.4 371 67.4
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 6.3e-152 541.2 373 66.0
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 9.1e-151 537.3 370 65.7
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.2e-150 537.0 361 66.2
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 5.9e-150 534.6 308 79.2
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 5.0e-149 531.6 374 61.5
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 8.0e-147 524.2 370 64.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 9.1e-143 510.8 413 58.4
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 4.0e-138 495.4 293 73.4
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.7e-133 479.9 388 59.5
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 5.0e-133 478.4 372 61.3
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.1e-124 450.7 274 74.1
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.2e-123 444.9 250 86.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-113 413.3 222 87.8
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-111 406.4 225 86.7
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.6e-110 403.7 345 58.8
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 8.6e-109 397.9 385 50.4
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.6e-102 377.1 216 77.8
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-102 376.7 204 88.2
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.6e-97 359.8 373 50.4
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.7e-96 357.1 383 46.5
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.6e-92 342.0 165 94.5
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.8e-91 339.0 384 44.8
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 8.4e-88 328.2 403 44.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 2.0e-73 280.4 170 72.4
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.9e-68 263.8 171 73.7
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.3e-50 202.6 475 29.7
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 6.3e-43 179.1 94 80.9
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 7.5e-36 155.6 129 64.3
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 5.9e-33 146.0 112 59.8
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.7e-32 144.4 101 64.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 3.8e-32 143.3 84 77.4
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.8e-29 134.4 92 70.7
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 4.5e-25 119.8 339 27.4
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 2.4e-18 97.4 163 36.2
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 8.6e-16 89.0 157 35.7
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 2.5e-15 87.4 64 60.9
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 7.3e-15 85.9 43 83.7
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 7.3e-15 85.9 47 80.9
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 3.4e-12 77.0 40 82.5
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 1.7e-08 64.7 30 73.3
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 4.7e-06 56.6 29 69.0
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 4.7e-06 56.6 28 85.7


User provided reference genes

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