Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.7e-80 302.0 157 100.0
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.3e-79 298.9 157 99.4
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 2.1e-61 239.2 156 80.8
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 2.1e-61 239.2 156 80.8
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 1.7e-58 229.6 157 79.0
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 6.5e-58 227.6 155 76.8
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 3.6e-56 221.9 153 77.1
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 3.3e-54 215.3 151 74.2
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.1e-52 210.3 157 73.9
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 1.4e-52 209.9 156 71.8
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 3.4e-51 205.3 157 72.6
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 4.5e-51 204.9 156 71.2
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 8.5e-50 200.7 159 69.8
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 1.1e-49 200.3 157 70.1
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 3.2e-49 198.7 143 76.2
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 9.4e-49 197.2 155 71.0
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 1.6e-48 196.4 157 70.1
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 1.4e-47 193.4 143 71.3
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 1.4e-47 193.4 159 67.9
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.8e-47 193.0 157 70.7
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 3.9e-47 191.8 157 70.7
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 3.9e-47 191.8 157 70.7
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 3.9e-47 191.8 149 67.1
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 5.1e-47 191.4 157 67.5
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 2.0e-46 189.5 160 66.9
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 4.4e-46 188.3 157 67.5
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 7.4e-46 187.6 153 69.9
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 1.3e-45 186.8 155 65.8
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 4.8e-45 184.9 155 67.1
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 1.1e-44 183.7 142 69.7
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.1e-44 183.7 155 67.1
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.4e-44 183.3 155 67.7
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 1.8e-44 183.0 157 69.4
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 2.4e-44 182.6 154 64.3
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 3.1e-44 182.2 154 66.9
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 4.1e-44 181.8 157 65.6
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 5.3e-44 181.4 163 67.5
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 6.9e-44 181.0 160 66.9
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 1.2e-43 180.3 163 66.3
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 1.5e-43 179.9 155 66.5
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.5e-43 179.9 156 67.3
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.0e-43 179.5 100 91.0
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 4.5e-43 178.3 156 66.0
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 4.5e-43 178.3 139 70.5
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 5.9e-43 177.9 158 66.5
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 1.4e-41 173.3 154 65.6
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 2.5e-41 172.6 156 64.1
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 4.2e-41 171.8 137 67.9
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 4.2e-41 171.8 156 62.8
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 9.4e-41 170.6 162 64.8
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 9.4e-41 170.6 142 64.8
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 1.2e-40 170.2 154 63.6
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 1.6e-40 169.9 164 64.6
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 3.6e-40 168.7 154 63.6
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 3.6e-40 168.7 157 61.1
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.0e-39 167.2 164 61.0
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 1.0e-39 167.2 138 65.2
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 1.8e-39 166.4 153 62.7
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 1.8e-39 166.4 156 62.2
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.3e-39 166.0 100 89.0
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 5.2e-39 164.9 156 64.1
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 5.2e-39 164.9 154 61.7
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 5.2e-39 164.9 155 61.9
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 5.2e-39 164.9 166 61.4
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 5.2e-39 164.9 138 63.8
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 6.7e-39 164.5 97 82.5
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 8.8e-39 164.1 154 62.3
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 8.8e-39 164.1 168 60.1
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 1.5e-38 163.3 152 62.5
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 2.0e-38 162.9 148 62.2
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 3.3e-38 162.2 154 61.0
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 4.4e-38 161.8 151 63.6
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 4.4e-38 161.8 150 59.3
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 5.7e-38 161.4 155 60.6
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 7.4e-38 161.0 150 58.7
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 9.7e-38 160.6 154 60.4
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 9.7e-38 160.6 147 60.5
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 1.3e-37 160.2 154 60.4
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 1.3e-37 160.2 154 60.4
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 1.3e-37 160.2 154 60.4
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 1.3e-37 160.2 154 60.4
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 2.8e-37 159.1 147 60.5
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 2.8e-37 159.1 149 59.7
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 4.8e-37 158.3 154 59.7
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 6.3e-37 157.9 153 60.1
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 6.3e-37 157.9 153 60.1
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 6.3e-37 157.9 153 60.1
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 1.1e-36 157.1 154 59.1
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.8e-36 156.4 147 59.9
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 3.1e-36 155.6 157 61.8
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 7.0e-36 154.5 149 58.4
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 1.6e-35 153.3 100 80.0
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 2.0e-35 152.9 150 58.0
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 2.0e-35 152.9 158 57.6
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 2.0e-35 152.9 98 78.6
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 4.5e-35 151.8 105 74.3
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 7.7e-35 151.0 147 57.8
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 2.2e-34 149.4 151 57.6
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 2.2e-34 149.4 96 75.0
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 8.5e-34 147.5 98 77.6
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 1.1e-33 147.1 155 57.4
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 1.9e-33 146.4 144 59.7
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 5.5e-33 144.8 93 76.3
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 9.4e-33 144.1 129 61.2
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.6e-32 143.3 99 73.7
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 2.7e-32 142.5 98 73.5
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 2.7e-32 142.5 106 68.9
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 4.7e-32 141.7 98 72.4
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 1.0e-31 140.6 153 55.6
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 3.3e-30 135.6 154 53.9
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 1.3e-29 133.7 98 73.5
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 1.3e-26 123.6 107 67.3
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 1.9e-25 119.8 122 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 3.2e-25 119.0 149 49.7
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 5.5e-25 118.2 118 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 9.4e-25 117.5 149 49.0
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.0e-23 114.0 126 54.0
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 2.3e-23 112.8 117 54.7
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 8.3e-21 104.4 98 59.2
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 1.4e-20 103.6 101 52.5
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 3.1e-20 102.4 140 45.0
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 1.6e-16 90.1 78 57.7
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 4.7e-16 88.6 64 70.3
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 8.0e-16 87.8 97 47.4
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 8.0e-16 87.8 60 73.3
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 1.5e-14 83.6 92 50.0
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.7e-13 80.1 98 49.0
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 7.8e-11 71.2 74 54.1
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 1.9e-09 66.6 61 59.0
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 4.7e-08 62.0 77 42.9
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.1e-08 61.6 85 43.5
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.1e-08 61.6 85 43.5
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.1e-08 61.6 85 43.5
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 6.1e-08 61.6 73 45.2
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 1.0e-07 60.8 85 43.5
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.0e-07 60.8 85 43.5
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 1.0e-07 60.8 85 43.5
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 1.0e-07 60.8 77 41.6
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 1.4e-07 60.5 72 41.7
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 1.4e-07 60.5 90 42.2
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 4.0e-07 58.9 106 36.8
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 5.2e-07 58.5 91 40.7
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 8.9e-07 57.8 90 37.8
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 39.0
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 40.3
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 41.6
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 1.5e-06 57.0 77 41.6
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 2.6e-06 56.2 96 37.5
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 2.6e-06 56.2 88 39.8
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 2.6e-06 56.2 88 39.8
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 2.6e-06 56.2 90 41.1
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 2.6e-06 56.2 90 41.1
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 2.6e-06 56.2 98 37.8
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 3.4e-06 55.8 77 41.6
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 3.4e-06 55.8 88 39.8
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 3.4e-06 55.8 91 38.5
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 3.4e-06 55.8 96 38.5
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 4.4e-06 55.5 88 39.8
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 5.8e-06 55.1 90 38.9
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 5.8e-06 55.1 74 41.9
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 5.8e-06 55.1 74 41.9
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 5.8e-06 55.1 88 39.8
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 5.8e-06 55.1 93 37.6
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 5.8e-06 55.1 86 38.4
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 5.8e-06 55.1 77 40.3
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 5.8e-06 55.1 90 40.0
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 5.8e-06 55.1 90 37.8
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 7.5e-06 54.7 88 39.8
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 7.5e-06 54.7 74 41.9
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 7.5e-06 54.7 88 39.8
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 7.5e-06 54.7 88 39.8
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 7.5e-06 54.7 74 41.9
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 7.5e-06 54.7 74 41.9
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 9.8e-06 54.3 91 38.5
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 9.8e-06 54.3 88 39.8


User provided reference genes

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